Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

56917133 .. 56922246

Gene Structure 5114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG380000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCAATTGCAAGAAAATTGGAAGGCTGAGAAACAAAAGGGAAGACCAGATATCGTCATATTTATGTGGTTTTATGATATTGCAAGACAAGGTCATCTTAAATTGCAAGACCAGGAAGGAAGGCCAAATATGGTCAAGTATCTTGGAGTGCCGCCCTGGATTTGGATCCCTGTGGTTGTTGTCGGGGACAGCAGTTATGATGTTTTGGTTGCTGATCTGAGGCCGGGTTCTGACAGCGTGGATCTGAAGGATATATGCACCTCCTCTGATTTTGGTGGCTTGATTGGCGGCTTTGGTTTTGACTGTATTGGATGTGATGGGGATTTTACAATCACTGGTTTTGTTCCCGCCCCTCTGCTCTGGGGTTGGCTTGAGCATGGAAGCGGTCGACTTGATTCGGGGCAGCTGGAGATGAGGACCGAGCTGATTTCTTTGGGCTTGGAACCTCTAATGTTAGGCGGCAGTTTACGGGTTTGGGTTTTGGACTCTGGAATGTCTCGGTCTGATTGTAAGAGGTCAGTGTCCCAGGTAGACACCGGCGGAGGAGAGGTTGTTGTTGGCGGTGGAGTCTGCTGCAGCGGCTGTGTGCGGGAAAGTGATGTTGGTGGACTGGAACAGGGCGGAGTGCCCTTAGCTATCTCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.1

Weight (kDa)

4.53

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	388, 531
AclWI	GGATC	3 cut(s)	160, 173, 249
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	162
AjnI	CCWGG	3 cut(s)	111, 155, 525
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	3 cut(s)	406, 424, 635
AluI	AGCT	3 cut(s)	406, 424, 635
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	3 cut(s)	160, 173, 249
AlwNI	CAGNNNCTG	1 cut(s)	582
AoxI	GGCC	2 cut(s)	122, 221
ApeKI	GCWGC	3 cut(s)	403, 573, 576
AspS9I	GGNCC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	415, 560, 588
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	3 cut(s)	113, 157, 527
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	7 cut(s)	152, 289, 404, 460, 574, 577, 580
BlsI	GCNGC	7 cut(s)	153, 290, 405, 461, 575, 578, 581
Bme1390I	CCNGG	4 cut(s)	113, 157, 225, 527
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	2 cut(s)	167, 444
BmrFI	CCNGG	4 cut(s)	113, 157, 225, 527
BpiI	GAAGAC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	631
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	155, 525
BsaXI	ACNNNNNCTCC	4 cut(s)	534, 537, 564, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	340, 615
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	3 cut(s)	113, 157, 527
BseDI	CCNNGG	2 cut(s)	155, 525
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	18, 209
BseNI	ACTGG	2 cut(s)	340, 615
BseRI	GAGGAG	2 cut(s)	253, 558
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	3 cut(s)	415, 560, 588
Bsh1285I	CGRYCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	124, 223
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	224, 537
BslFI	GGGAC	2 cut(s)	200, 508
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	501
BsmFI	GGGAC	2 cut(s)	200, 508
BsnI	GGCC	2 cut(s)	124, 223
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	165, 214, 241
BspANI	GGCC	2 cut(s)	124, 223
BspCNI	CTCAG	2 cut(s)	19, 210
BspLI	GGNNCC	2 cut(s)	167, 444
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	3 cut(s)	160, 173, 249
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	340, 615
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	155, 525
BssMI	GATC	3 cut(s)	165, 214, 241
Bst2UI	CCWGG	3 cut(s)	113, 157, 527
Bst4CI	ACNGT	1 cut(s)	305
BstDEI	CTNAG	4 cut(s)	27, 218, 631, 645
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	3 cut(s)	168, 217, 244
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	3 cut(s)	165, 214, 241
BstMCI	CGRYCG	1 cut(s)	388
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 579, 641
BstNI	CCWGG	3 cut(s)	113, 157, 527
BstSCI	CCNGG	4 cut(s)	111, 155, 223, 525
BstSFI	CTRYAG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	415, 560, 588
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	165, 241
BstYI	RGATCY	2 cut(s)	165, 241
BsuRI	GGCC	2 cut(s)	124, 223
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	333, 525
CaiI	CAGNNNCTG	1 cut(s)	582
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	417
CviAII	CATG	1 cut(s)	377
DdeI	CTNAG	4 cut(s)	27, 218, 631, 645
DpnI	GATC	3 cut(s)	167, 216, 243
DpnII	GATC	3 cut(s)	165, 214, 241
EciI	GGCGGA	2 cut(s)	555, 636
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	266
EcoRII	CCWGG	3 cut(s)	111, 155, 525
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	1 cut(s)	380
FaiI	YATR	8 cut(s)	59, 65, 75, 131, 198, 254, 256, 378
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	2 cut(s)	200, 508
FatI	CATG	1 cut(s)	376
FauI	CCCGC	2 cut(s)	355, 582
FblI	GTMKAC	2 cut(s)	388, 531
Fnu4HI	GCNGC	7 cut(s)	152, 289, 404, 460, 574, 577, 580
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	7 cut(s)	152, 289, 404, 460, 574, 577, 580
GluI	GCNGC	7 cut(s)	152, 289, 404, 460, 574, 577, 580
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	2 cut(s)	124, 223
HapII	CCGG	2 cut(s)	224, 537
Hin1II	CATG	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	3 cut(s)	395, 485, 567
HpaII	CCGG	2 cut(s)	224, 537
Hpy166II	GTNNAC	4 cut(s)	389, 467, 532, 608
Hpy188I	TCNGA	5 cut(s)	219, 232, 246, 268, 505
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	4 cut(s)	389, 467, 532, 608
HpyAV	CCTTC	4 cut(s)	16, 110, 114, 241
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	6 cut(s)	4, 10, 83, 106, 258, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 579, 641
HpyF3I	CTNAG	4 cut(s)	27, 218, 631, 645
Hsp92II	CATG	1 cut(s)	380
Kzo9I	GATC	3 cut(s)	165, 214, 241
Lsp1109I	GCAGC	3 cut(s)	415, 560, 588
MalI	GATC	3 cut(s)	167, 216, 243
MboI	GATC	3 cut(s)	165, 214, 241
MboII	GAAGA	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	2 cut(s)	165, 241
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	3 cut(s)	5, 16, 101
MlyI	GAGTC	2 cut(s)	479, 576
MnlI	CCTC	9 cut(s)	213, 271, 274, 363, 408, 456, 507, 536, 541
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	2 cut(s)	406, 579
MspI	CCGG	2 cut(s)	224, 537
MspR9I	CCNGG	4 cut(s)	113, 157, 225, 527
MunI	CAATTG	1 cut(s)	5
MvaI	CCWGG	3 cut(s)	113, 157, 527
MwoI	GCNNNNNNNGC	3 cut(s)	285, 579, 641
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	165, 214, 241
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	167, 444
PfeI	GAWTC	1 cut(s)	395
PflFI	GACNNNGTC	1 cut(s)	90
PkrI	GCNGC	7 cut(s)	153, 290, 405, 461, 575, 578, 581
PleI	GAGTC	2 cut(s)	479, 575
PpsI	GAGTC	2 cut(s)	479, 575
Psp6I	CCWGG	3 cut(s)	111, 155, 525
PspGI	CCWGG	3 cut(s)	111, 155, 525
PspN4I	GGNNCC	2 cut(s)	167, 444
PspPI	GGNCC	1 cut(s)	417
PstI	CTGCAG	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	165, 241
PsyI	GACNNNGTC	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	62
SalI	GTCGAC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	7 cut(s)	152, 289, 404, 460, 574, 577, 580
Sau3AI	GATC	3 cut(s)	165, 214, 241
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	479, 576
ScrFI	CCNGG	4 cut(s)	113, 157, 225, 527
SduI	GDGCHC	1 cut(s)	630
SetI	ASST	9 cut(s)	94, 263, 408, 426, 448, 518, 531, 552, 637
SfcI	CTRYAG	1 cut(s)	574
SgrAI	CRCCGGYG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	5, 16, 101
StyD4I	CCNGG	4 cut(s)	111, 155, 223, 525
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	388
TaqII	GACCGA	2 cut(s)	434, 489
TasI	AATT	3 cut(s)	5, 16, 101
TauI	GCSGC	4 cut(s)	154, 291, 462, 582
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	2 cut(s)	340, 525
TseI	GCWGC	3 cut(s)	403, 573, 576
TspRI	CASTG	2 cut(s)	340, 525
Tth111I	GACNNNGTC	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	417
XmiI	GTMKAC	2 cut(s)	388, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.