RchiOBHm_Chr5g0032501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001119
Physical Location & Seq
Reverse (-)
26150834 .. 26151590
757 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31168

Sequence Viewer

Length: 600 bp
ATGGCCATGGCCGTTGCTAGCCTTGTGGCTTATTGTTTCTTGCTTCTTCCTTCTTTCGTACTGTTGCTTAGAGCGCCGCCTTGGATTTGGTTCCCAGCGGTTGTTGTCTGGGACAGAAGTTATGGTTTTCTGGTAGCTTCTCTGAGGCTGAGCTCTGACAACGTGGATCTGAGTTGGTCTGTATCAGATCGTTATGACTGGGTCTCGGATCGGAGTTGTCTGGCTGGCCTCTTTGTGATGGTTGGGTGTCATCGTAGGGCAGACATGGTTGTTGATTTGGATGATAGATGTTCGAGATTCAAGCCAGATTTTGCTGGTTCTGGTTTGAAGGACATGGTGGATGATCGCAATGGTCGAACTGATGTTATACATGGTGGTTGGCTGCAACGTCAAAGAGTTTCCCGCGTTGGGTTGGCCTGGCTAGATCAGGTGACTGATCTAAGCTTGGTTGATGTAATGGTGGCATTCCCTACCGGCTGCCAGATCAAGGCACTCTGGTTCCCAGATGCTGGTGGAGAAGGTTGCGTTGGTGGAGGCGGTGGACTCTTTGATGGCAGCTGGACGGAGATTGTGGACTATGGAGGCTGGTCTTGGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.01

Weight (kDa)

4.76

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AccII CGCG 1 cut(s) 405
AciI CCGC 4 cut(s) 77, 98, 403, 537
AclWI GGATC 2 cut(s) 174, 216
AcoI YGGCCR 2 cut(s) 3, 9
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 3 cut(s) 408, 487, 509
AgsI TTSAA 2 cut(s) 301, 328
AjnI CCWGG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 4 cut(s) 137, 153, 444, 558
AluI AGCT 4 cut(s) 137, 153, 444, 558
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 174, 216
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 4 cut(s) 3, 9, 226, 414
ApeKI GCWGC 3 cut(s) 382, 477, 555
AspLEI GCGC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 442
AsuNHI GCTAGC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 369, 464, 567
BccI CCATC 2 cut(s) 232, 545
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 2 cut(s) 18, 422
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 4 cut(s) 77, 383, 478, 556
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 4 cut(s) 78, 384, 479, 557
Bme1390I CCNGG 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 92, 500
BmrFI CCNGG 1 cut(s) 418
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 487, 509
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 2 cut(s) 286, 346
BseLI CCNNNNNNNGG 3 cut(s) 408, 487, 509
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 134, 140, 161
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 369, 464, 567
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 4 cut(s) 5, 11, 228, 416
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 408, 487, 509
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 4 cut(s) 5, 11, 228, 416
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
Bsp1720I GCTNAGC 1 cut(s) 149
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 77, 98, 403, 537
BspANI GGCC 4 cut(s) 5, 11, 228, 416
BspCNI CTCAG 3 cut(s) 135, 141, 162
BspFNI CGCG 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 92, 500
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 174, 216
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 6, 80
BssMI GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
BssT1I CCWWGG 2 cut(s) 6, 80
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 19, 226
BstDEI CTNAG 5 cut(s) 68, 143, 149, 170, 440
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 286, 346
BstFNI CGCG 1 cut(s) 405
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 7 cut(s) 169, 190, 211, 346, 427, 439, 486
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 416
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 369, 464, 567
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 4 cut(s) 5, 11, 228, 416
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 286, 346
Cac8I GCNNGC 2 cut(s) 19, 226
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 473
Csp6I GTAC 1 cut(s) 59
CviAII CATG 4 cut(s) 7, 265, 334, 371
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 5 cut(s) 68, 143, 149, 170, 440
DpnI GATC 7 cut(s) 168, 189, 210, 345, 426, 438, 485
DpnII GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
EaeI YGGCCR 2 cut(s) 3, 9
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 6, 80
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 2 cut(s) 6, 80
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 6, 80
FaeI CATG 4 cut(s) 10, 268, 337, 374
FaiI YATR 8 cut(s) 8, 123, 195, 266, 335, 368, 372, 579
FaqI GGGAC 1 cut(s) 125
FatI CATG 4 cut(s) 6, 264, 333, 370
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 4 cut(s) 77, 383, 478, 556
FokI GGATG 2 cut(s) 293, 353
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 4 cut(s) 77, 383, 478, 556
FspBI CTAG 2 cut(s) 18, 422
GlaI GCGC 1 cut(s) 75
GluI GCNGC 4 cut(s) 77, 383, 478, 556
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 4 cut(s) 5, 11, 228, 416
HapII CCGG 1 cut(s) 474
HhaI GCGC 1 cut(s) 76
Hin1II CATG 4 cut(s) 10, 268, 337, 374
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 442
HinfI GANTC 2 cut(s) 297, 543
HpaII CCGG 1 cut(s) 474
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 2 cut(s) 542, 574
Hpy188I TCNGA 6 cut(s) 144, 157, 171, 187, 208, 213
Hpy188III TCNNGA 1 cut(s) 294
Hpy8I GTNNAC 2 cut(s) 542, 574
HpyAV CCTTC 3 cut(s) 60, 322, 512
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 2 cut(s) 162, 388
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 5 cut(s) 68, 143, 149, 170, 440
HpySE526I ACGT 2 cut(s) 162, 388
Hsp92II CATG 4 cut(s) 10, 268, 337, 374
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
Lsp1109I GCAGC 3 cut(s) 369, 464, 567
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 18, 422
MaeII ACGT 2 cut(s) 162, 388
MaeIII GTNAC 1 cut(s) 430
MalI GATC 7 cut(s) 168, 189, 210, 345, 426, 438, 485
MboI GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
MboII GAAGA 1 cut(s) 38
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 537
MnlI CCTC 4 cut(s) 138, 239, 527, 575
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 98, 558
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 418
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 73
NcoI CCATGG 1 cut(s) 6
NdeII GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 4 cut(s) 10, 268, 337, 374
NlaIV GGNNCC 2 cut(s) 92, 500
NmuCI GTSAC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 352
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 4 cut(s) 78, 384, 479, 557
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 416
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 2 cut(s) 92, 500
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 558
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 155
SatI GCNGC 4 cut(s) 77, 383, 478, 556
Sau3AI GATC 7 cut(s) 166, 187, 208, 343, 424, 436, 483
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 418
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 139, 155, 165, 391, 432, 446, 523, 560
SfaNI GCATC 1 cut(s) 496
SsiI CCGC 4 cut(s) 77, 98, 403, 537
SspMI CTAG 2 cut(s) 18, 422
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 416
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 2 cut(s) 165, 391
TaqI TCGA 2 cut(s) 293, 355
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 1 cut(s) 297
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 3 cut(s) 382, 477, 555
Tsp45I GTSAC 1 cut(s) 430
TspGWI ACGGA 1 cut(s) 578
Tth111I GACNNNGTC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 509
XspI CTAG 2 cut(s) 18, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.