Rw0G000230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00006
OG0001119
Physical Location & Seq
Forward (+)
16717 .. 17667
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000230.1

Sequence Viewer

Length: 348 bp
ATGATGGTGGAGCTCTCTACTGGCTGCCAGATCCAGGCATTCTGGCTCCCGTTTGCTGGTGGAGCAGGTGGCGTTGGTGGCGGCGGTGGATTTTTCGGTGGCAGCTGGACGGAGGCTGTAGACGATGGAGGCTGGTCTTGGTGGGTGGCTTGGGCCTCCATGTGGATCTACTTCTTTGAGATGCAAAATGCCACAAGTTACAAAATTAATCACGTTTTAGACTATCTGGTGAATGCGGACAAAACCGACACATCTCTTGAAAAGGTTGAAGGGATTAAAAATAGGAGCACAACAACTGAATCCAACTTCATGATCATTATGTCCTTAAATCATAACAAGATGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

4.71

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 120
AciI CCGC 3 cut(s) 81, 84, 236
AclWI GGATC 2 cut(s) 25, 173
AfiI CCNNNNNNNGG 3 cut(s) 34, 56, 162
AgsI TTSAA 2 cut(s) 260, 269
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 13, 105
AluI AGCT 2 cut(s) 13, 105
Alw21I GWGCWC 2 cut(s) 15, 290
AlwI GGATC 2 cut(s) 25, 173
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 24, 102
AseI ATTAAT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 241
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 15, 290
BbvI GCAGC 2 cut(s) 11, 114
BccI CCATC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 35
BclI TGATCA 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 3 cut(s) 25, 82, 103
BlsI GCNGC 3 cut(s) 26, 83, 104
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 1 cut(s) 171
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 56, 162
Bse1I ACTGG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 34, 56, 162
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 11, 114
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 15, 290
BslI CCNNNNNNNGG 3 cut(s) 34, 56, 162
BsmI GAATGC 2 cut(s) 38, 238
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 15, 290
Bsp143I GATC 3 cut(s) 30, 165, 312
BspACI CCGC 3 cut(s) 81, 84, 236
BspANI GGCC 1 cut(s) 155
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 25, 173
BsrI ACTGG 1 cut(s) 25
BssMI GATC 3 cut(s) 30, 165, 312
Bst2UI CCWGG 1 cut(s) 35
BstKTI GATC 3 cut(s) 33, 168, 315
BstMBI GATC 3 cut(s) 30, 165, 312
BstMWI GCNNNNNNNGC 2 cut(s) 62, 78
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 11, 114
BstX2I RGATCY 2 cut(s) 30, 165
BstYI RGATCY 2 cut(s) 30, 165
BsuRI GGCC 1 cut(s) 155
BveI ACCTGC 1 cut(s) 56
CciI TCATGA 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 2 cut(s) 160, 310
CviJI RGCY 8 cut(s) 13, 24, 46, 105, 116, 132, 149, 155
CviKI_1 RGCY 8 cut(s) 13, 24, 46, 105, 116, 132, 149, 155
DpnI GATC 3 cut(s) 32, 167, 314
DpnII GATC 3 cut(s) 30, 165, 312
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 2 cut(s) 163, 313
FaiI YATR 4 cut(s) 161, 311, 320, 333
FatI CATG 2 cut(s) 159, 309
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 25, 82, 103
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 25, 82, 103
GluI GCNGC 3 cut(s) 25, 82, 103
HaeIII GGCC 1 cut(s) 155
Hin1II CATG 2 cut(s) 163, 313
HinfI GANTC 1 cut(s) 299
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 257, 310
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 78
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 163, 313
Ksp22I TGATCA 1 cut(s) 312
Kzo9I GATC 3 cut(s) 30, 165, 312
LmnI GCTCC 4 cut(s) 10, 51, 62, 285
Lsp1109I GCAGC 2 cut(s) 11, 114
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 197
MalI GATC 3 cut(s) 32, 167, 314
MboI GATC 3 cut(s) 30, 165, 312
MflI RGATCY 2 cut(s) 30, 165
MhlI GDGCHC 2 cut(s) 15, 290
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 3 cut(s) 106, 122, 166
MseI TTAA 4 cut(s) 207, 276, 326, 346
MspA1I CMGCKG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 2 cut(s) 38, 238
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 62, 78
NdeII GATC 3 cut(s) 30, 165, 312
NlaIII CATG 2 cut(s) 163, 313
NlaIV GGNNCC 1 cut(s) 47
PagI TCATGA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 56
PctI GAATGC 2 cut(s) 38, 238
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 3 cut(s) 26, 83, 104
PshBI ATTAAT 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 153
PsuI RGATCY 2 cut(s) 30, 165
PvuII CAGCTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 207, 276, 326, 346
SatI GCNGC 3 cut(s) 25, 82, 103
Sau3AI GATC 3 cut(s) 30, 165, 312
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 15, 290
SetI ASST 5 cut(s) 15, 70, 107, 216, 267
SfaNI GCATC 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 117
Sse9I AATT 1 cut(s) 204
SsiI CCGC 3 cut(s) 81, 84, 236
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 33
TaiI ACGT 1 cut(s) 216
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 4 cut(s) 207, 276, 326, 346
Tru9I TTAA 4 cut(s) 207, 276, 326, 346
TseI GCWGC 2 cut(s) 24, 102
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 125
VspI ATTAAT 1 cut(s) 207
XmiI GTMKAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.