Rh5CG283900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
31063139 .. 31063438
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG283900.1

Sequence Viewer

Length: 300 bp
ATGTTTAAATATGGAATAAATGACCCATTTTCTTCAACTGCTTTGCTTATGCGATTTTCCTCACAAGATACCACCAGTCTTTCCCAGCCTGCCCCATCAACTTGTAGCTCGATTTGTGGGTCCAACAAGTGTGTTCAAATTCACCGTGGGCCTTTAAAAGTCAACAAACGTGTAAGGGTTGGCCTCCCCATCGCATCTGCAACTGTAAAGTACAGAAGTTGCAATCAGCTGGCTTTGCAACTCAAATGGGCATTCTTTCTTTCATTTTCATTGCAGTTTACTCGTCCCTGTTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.03

Weight (kDa)

9.91

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 36, 137
AluBI AGCT 2 cut(s) 108, 229
AluI AGCT 2 cut(s) 108, 229
AoxI GGCC 2 cut(s) 149, 181
ApoI RAATTY 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 120, 149
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 120
BccI CCATC 2 cut(s) 103, 197
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 120, 149
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 84
BshFI GGCC 2 cut(s) 151, 183
BslFI GGGAC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 151, 183
BspANI GGCC 2 cut(s) 151, 183
BspLI GGNNCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 146, 205
BstC8I GCNNGC 2 cut(s) 90, 231
BstDSI CCRYGG 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 151, 183
BtgI CCRYGG 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 90, 231
Cfr13I GGNCC 2 cut(s) 120, 149
Csp6I GTAC 1 cut(s) 211
CviJI RGCY 6 cut(s) 88, 108, 151, 183, 229, 233
CviKI_1 RGCY 6 cut(s) 88, 108, 151, 183, 229, 233
CviQI GTAC 1 cut(s) 211
DraI TTTAAA 2 cut(s) 7, 156
Eco47I GGWCC 1 cut(s) 120
FaiI YATR 2 cut(s) 12, 50
FaqI GGGAC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 88
HaeIII GGCC 2 cut(s) 151, 183
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 163, 279
Hpy8I GTNNAC 2 cut(s) 163, 279
HpyCH4III ACNGT 2 cut(s) 146, 205
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 200, 222, 238, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 169
LpnPI CCDG 4 cut(s) 88, 98, 102, 215
LweI GCATC 1 cut(s) 203
MaeII ACGT 1 cut(s) 169
MboII GAAGA 1 cut(s) 24
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 2 cut(s) 70, 194
MseI TTAA 3 cut(s) 6, 155, 298
MspA1I CMGCKG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 121
PctI GAATGC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 2 cut(s) 120, 149
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 6, 155, 298
Sau96I GGNCC 2 cut(s) 120, 149
SetI ASST 3 cut(s) 110, 172, 231
SfaNI GCATC 1 cut(s) 203
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 138
TaaI ACNGT 2 cut(s) 146, 205
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 138
TatI WGTACW 1 cut(s) 210
Tru1I TTAA 3 cut(s) 6, 155, 298
Tru9I TTAA 3 cut(s) 6, 155, 298
TspDTI ATGAA 2 cut(s) 252, 258
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.