Rh1BG123400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
20834482 .. 20847033
12552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG123400.1

Sequence Viewer

Length: 345 bp
ATGGAGGGGGCTTGCATTTTCCCTTTTCCAGTTGAACAATCTTCTCTGATTCCTAACCAAAAGAATTCTTGCATTGCTAACGGTTGCCCCATTGAATCAGCTGTGTTTCGTACTGAAGTGCAGCATGAAGATATTTTGCATTTGAGGGACGTTCCCAGAACTTTGTTGTTCATCCACTTGGAGAAGTATCTTGATAGTGTTGCAGATGGTCTTTCCAATATGGCTCATTCTCTGGGATTAGGCCTTCATATTCTTCAGGATCCCCCACAGTCTATCCAAGCTTTACTGCTGACTATTGGTGTCTCAAGTGTAGAGCTGGAGTTTTTGTTGTGTTTGGGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.49

Weight (kDa)

4.79

Isoelectric Point (pI)

65.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 254, 267
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 135, 239
AfaI GTAC 1 cut(s) 112
AgsI TTSAA 2 cut(s) 35, 95
AluBI AGCT 3 cut(s) 101, 281, 316
AluI AGCT 3 cut(s) 101, 281, 316
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 2 cut(s) 254, 267
AoxI GGCC 2 cut(s) 241, 337
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 307
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bse1I ACTGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 72
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 2 cut(s) 243, 339
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 243, 339
Bsp143I GATC 1 cut(s) 259
BspANI GGCC 2 cut(s) 243, 339
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 254, 267
BsrDI GCAATG 1 cut(s) 72
BsrI ACTGG 1 cut(s) 29
BssMI GATC 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 83, 270
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 2 cut(s) 243, 339
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 125
CviJI RGCY 7 cut(s) 11, 101, 224, 243, 281, 316, 339
CviKI_1 RGCY 7 cut(s) 11, 101, 224, 243, 281, 316, 339
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 135, 239
EcoRI GAATTC 1 cut(s) 64
FaeI CATG 1 cut(s) 128
FaiI YATR 3 cut(s) 126, 221, 249
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 2 cut(s) 243, 339
Hin1II CATG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 2 cut(s) 49, 95
Hpy188I TCNGA 2 cut(s) 48, 344
Hpy188III TCNNGA 2 cut(s) 191, 257
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 2 cut(s) 83, 270
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 15, 72, 121, 139, 203
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 42, 169, 218, 242, 302
Lsp1109I GCAGC 1 cut(s) 133
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MboII GAAGA 3 cut(s) 33, 140, 245
MflI RGATCY 1 cut(s) 259
MluCI AATT 1 cut(s) 64
MnlI CCTC 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 101
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 243
PfeI GAWTC 2 cut(s) 49, 95
PkrI GCNGC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 337
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 337
SetI ASST 4 cut(s) 103, 153, 283, 318
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 1 cut(s) 64
SseBI AGGCCT 1 cut(s) 243
StuI AGGCCT 1 cut(s) 243
TaaI ACNGT 2 cut(s) 83, 270
TaiI ACGT 1 cut(s) 153
TasI AATT 1 cut(s) 64
TfiI GAWTC 2 cut(s) 49, 95
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 141, 160, 236
XapI RAATTY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.