Rh5AG290200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001119
Physical Location & Seq
Reverse (-)
39738602 .. 39739602
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG290200.1

Sequence Viewer

Length: 498 bp
ATGAATCGAGACAAATCAAGTTGTAATGTAGACACTATAGTCAGTTTCTCTCTATGGCGAGCAACGACGACAAAACTTCTCACCTGTTTCTTTTTTCATATTGTGACAGATATAAAATCATTTATCTGTCTCTTTCTTCGGGAGGAGGAGGCGTTTTTGCTGATGTTGGTGGGGATGGGGATCTGGTTGACCAAATCTGGCATGGAGGAATTCCAAATGGCAATGGTTGTGTCGTGCGTCTCTGATCGGATTCGCCCCGAACTAGGGACTGATTTCTTCATTGCTTGCGACGGAGCTCCTCCTTGGGAACTATATGCGGCTGAAGGGGAGGAAATTGATACTTTGATGGCGACGCCATCCAATACTGGTTGCCAGATCGAGGAGCTCTGGATCCCAGATGCTGGTGGAGCGACTTGCGTTGGTGACGGAGGTGAACTCTTCTCTGGCTGCTGGACGAAGACTGTGGAAAATGGAGGCTGGTCTTGGTGGGTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.35

Weight (kDa)

4.27

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 317
AclWI GGATC 3 cut(s) 188, 385, 398
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 4 cut(s) 263, 264, 379, 401
AluBI AGCT 2 cut(s) 296, 385
AluI AGCT 2 cut(s) 296, 385
Alw21I GWGCWC 2 cut(s) 298, 387
Alw26I GTCTC 3 cut(s) 3, 134, 244
AlwI GGATC 3 cut(s) 188, 385, 398
AlwNI CAGNNNCTG 1 cut(s) 401
ApeKI GCWGC 1 cut(s) 447
ApoI RAATTY 1 cut(s) 209
AsuHPI GGTGA 3 cut(s) 73, 434, 443
BamHI GGATCC 1 cut(s) 390
BanII GRGCYC 2 cut(s) 298, 387
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 2 cut(s) 298, 387
BbvI GCAGC 1 cut(s) 434
BccI CCATC 3 cut(s) 169, 340, 364
BcoDI GTCTC 3 cut(s) 3, 134, 244
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 2 cut(s) 318, 448
BlsI GCNGC 2 cut(s) 319, 449
BmiI GGNNCC 1 cut(s) 392
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 464
BplI GAGNNNNNCTC 2 cut(s) 420, 452
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 264, 379, 401
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 228, 279
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 180, 356
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 4 cut(s) 263, 264, 379, 401
BseMI GCAATG 2 cut(s) 228, 279
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 4 cut(s) 158, 161, 288, 395
BseXI GCAGC 1 cut(s) 434
BsiHKAI GWGCWC 2 cut(s) 298, 387
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 4 cut(s) 263, 264, 379, 401
BsmAI GTCTC 3 cut(s) 3, 134, 244
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 298, 387
Bsp143I GATC 4 cut(s) 180, 244, 375, 390
BspACI CCGC 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 392
BspPI GGATC 3 cut(s) 188, 385, 398
BsrDI GCAATG 2 cut(s) 228, 279
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 4 cut(s) 180, 244, 375, 390
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 353
BstC8I GCNNGC 2 cut(s) 60, 286
BstDEI CTNAG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 180, 356
BstKTI GATC 4 cut(s) 183, 247, 378, 393
BstMAI GTCTC 3 cut(s) 3, 134, 244
BstMBI GATC 4 cut(s) 180, 244, 375, 390
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 2 cut(s) 180, 390
BstYI RGATCY 2 cut(s) 180, 390
BtsCI GGATG 2 cut(s) 180, 356
Cac8I GCNNGC 2 cut(s) 60, 286
CaiI CAGNNNCTG 1 cut(s) 401
CseI GACGC 2 cut(s) 226, 361
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 296, 320, 385, 447, 477, 494
CviKI_1 RGCY 6 cut(s) 296, 320, 385, 447, 477, 494
DdeI CTNAG 1 cut(s) 495
DpnI GATC 4 cut(s) 182, 246, 377, 392
DpnII GATC 4 cut(s) 180, 244, 375, 390
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 443
EarI CTCTTC 1 cut(s) 443
Ecl136II GAGCTC 2 cut(s) 296, 385
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 2 cut(s) 298, 387
Eco53kI GAGCTC 2 cut(s) 296, 385
Eco57I CTGAAG 1 cut(s) 342
EcoICRI GAGCTC 2 cut(s) 296, 385
EcoRI GAATTC 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 2 cut(s) 298, 387
ErhI CCWWGG 1 cut(s) 302
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 1 cut(s) 205
FaiI YATR 7 cut(s) 38, 55, 99, 113, 203, 313, 315
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 318, 448
FokI GGATG 2 cut(s) 187, 343
FriOI GRGCYC 2 cut(s) 298, 387
Fsp4HI GCNGC 2 cut(s) 318, 448
FspBI CTAG 1 cut(s) 263
GluI GCNGC 2 cut(s) 318, 448
HgaI GACGC 2 cut(s) 226, 361
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 4, 250
HphI GGTGA 3 cut(s) 73, 434, 443
Hpy166II GTNNAC 3 cut(s) 31, 189, 434
Hpy188I TCNGA 2 cut(s) 244, 249
Hpy188III TCNNGA 3 cut(s) 8, 140, 388
Hpy8I GTNNAC 3 cut(s) 31, 189, 434
Hpy99I CGWCG 3 cut(s) 70, 293, 355
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 4 cut(s) 180, 244, 375, 390
LmnI GCTCC 4 cut(s) 293, 301, 382, 407
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 103, 422
MalI GATC 4 cut(s) 182, 246, 377, 392
MboI GATC 4 cut(s) 180, 244, 375, 390
MboII GAAGA 4 cut(s) 128, 268, 430, 469
MflI RGATCY 2 cut(s) 180, 390
MhlI GDGCHC 2 cut(s) 298, 387
MluCI AATT 2 cut(s) 209, 333
MnlI CCTC 9 cut(s) 136, 139, 142, 199, 309, 322, 373, 422, 467
MwoI GCNNNNNNNGC 1 cut(s) 407
NdeII GATC 4 cut(s) 180, 244, 375, 390
NlaIII CATG 1 cut(s) 205
NlaIV GGNNCC 1 cut(s) 392
NmuCI GTSAC 2 cut(s) 103, 422
PfeI GAWTC 2 cut(s) 4, 250
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 2 cut(s) 319, 449
Psp124BI GAGCTC 2 cut(s) 298, 387
PspN4I GGNNCC 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 2 cut(s) 180, 390
SacI GAGCTC 2 cut(s) 298, 387
SatI GCNGC 2 cut(s) 318, 448
Sau3AI GATC 4 cut(s) 180, 244, 375, 390
SduI GDGCHC 2 cut(s) 298, 387
SetI ASST 4 cut(s) 86, 298, 387, 433
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 209, 333
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 2 cut(s) 298, 387
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 463
TaqI TCGA 2 cut(s) 7, 378
TasI AATT 2 cut(s) 209, 333
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 2 cut(s) 4, 250
TseFI GTSAC 2 cut(s) 103, 422
TseI GCWGC 1 cut(s) 447
Tsp45I GTSAC 2 cut(s) 103, 422
TspDTI ATGAA 3 cut(s) 17, 86, 268
TspGWI ACGGA 2 cut(s) 306, 441
Van91I CCANNNNNTGG 1 cut(s) 401
XapI RAATTY 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.