RLG00000017718

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001119
Physical Location & Seq
Reverse (-)
20396018 .. 20397608
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017718

Sequence Viewer

Length: 855 bp
ATGGTCGTGGCCATTGCTAGCCTTGTGGCTGATTGGTTTTTGCTTCTTATTGTTTTTGTATTGTTGCTAGGAGCACCGCCTTGGGTTGATGTTTGGGACGGCAATCATGGTGTCCTGGACGGCAATCATGGTGTCCTGGTGGCGTCTCTGAGGCCGAGTTTTGACAGCCGGGATCTGCTTTGGTCTATATCGGTTCAAATCGTTTGGGTCTTGGATCAGAGTCATCTGGCTGGTCTCTTTGCGGTGCTTGGGTGTCGTCGTAAGGCAGCCATAGTCGTTATTGATTGGGCTGTTAGTTGTTCGGGTTTCGAGCCAGATTTTGCAGTTTATGGATCGAAGGACATGGTGGATGTTCGCACTACTGTTGGATGTGGTGGTTCGCTGCAACGTCGAAGAGGTGCCGGGGTTGGGTTGGCTTGGCCGGATCAGGAGATAGATCTAGGCTTGGTTGATGTGCTGGTGGCATTGTCCTTTACTGACGGCCAGATCGAGGTGTTCTGGTTCTCGATAGCTAGTGGAGCAGGTCGCGTTGGTAACAGCGGTGATCTCTTTGCTGGGGTCTGGACGGAGGCTGTGGACGATGGAGGTTGGGCTTGGTGGGTGGCTTGGGCCTCCAAGTGGGTTTGTTTATTTGGGCTAGGGTTCCTAGTGGACTGGTTTGATTTGTGTTGGAGGGTGTGGTGGCTCTCGGCCTATCAGCAAAGTGGCATTATGTTTGTTCTATGTTTGACCTTGATTCCACTTTTCAAGGTGGAGGGCGAGACTGTGCAAATTGTGGAGGCTGCTGCTGCAGAGGATATAGATGACGTGCTGCTTCCACTACAAGCTACAAAAGAGAGTGGGATCCCCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

30.95

Weight (kDa)

4.28

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 398
AccII CGCG 1 cut(s) 528
AciI CCGC 3 cut(s) 77, 242, 540
AclWI GGATC 6 cut(s) 180, 222, 340, 432, 838, 851
AcoI YGGCCR 3 cut(s) 9, 419, 481
AcyI GRCGYC 1 cut(s) 143
AfiI CCNNNNNNNGG 3 cut(s) 408, 490, 618
AgsI TTSAA 2 cut(s) 197, 748
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 2 cut(s) 114, 135
AluBI AGCT 2 cut(s) 512, 827
AluI AGCT 2 cut(s) 512, 827
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 3 cut(s) 150, 239, 755
AlwI GGATC 6 cut(s) 180, 222, 340, 432, 838, 851
AoxI GGCC 6 cut(s) 9, 152, 419, 481, 609, 690
ApeKI GCWGC 6 cut(s) 266, 382, 782, 785, 788, 811
AspS9I GGNCC 1 cut(s) 609
AsuC2I CCSGG 2 cut(s) 170, 403
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 17
BalI TGGCCA 1 cut(s) 11
BamHI GGATCC 1 cut(s) 843
BanI GGYRCC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 6 cut(s) 278, 369, 769, 772, 775, 798
BccI CCATC 1 cut(s) 575
BceAI ACGGC 3 cut(s) 115, 136, 496
BciT130I CCWGG 2 cut(s) 116, 137
BcnI CCSGG 2 cut(s) 170, 403
BcoDI GTCTC 3 cut(s) 150, 239, 755
BfaI CTAG 6 cut(s) 18, 68, 440, 513, 638, 647
BfmI CTRYAG 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 512
BglII AGATCT 1 cut(s) 436
BisI GCNGC 6 cut(s) 267, 383, 783, 786, 789, 812
BlsI GCNGC 6 cut(s) 268, 384, 784, 787, 790, 813
Bme1390I CCNGG 4 cut(s) 116, 137, 170, 403
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 609
BmiI GGNNCC 3 cut(s) 400, 644, 845
BmrFI CCNGG 4 cut(s) 116, 137, 170, 403
BmtI GCTAGC 1 cut(s) 21
BpuMI CCSGG 2 cut(s) 170, 403
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 80, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 408, 490, 618
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 116, 137
BseDI CCNNGG 2 cut(s) 80, 402
BseGI GGATG 2 cut(s) 355, 374
BseLI CCNNNNNNNGG 3 cut(s) 408, 490, 618
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 659
BseXI GCAGC 6 cut(s) 278, 369, 769, 772, 775, 798
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 6 cut(s) 11, 154, 421, 483, 611, 692
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 3 cut(s) 169, 402, 422
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 408, 490, 618
BsmAI GTCTC 3 cut(s) 150, 239, 755
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 6 cut(s) 11, 154, 421, 483, 611, 692
Bso31I GGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
BspACI CCGC 3 cut(s) 77, 242, 540
BspANI GGCC 6 cut(s) 11, 154, 421, 483, 611, 692
BspCNI CTCAG 1 cut(s) 141
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 3 cut(s) 400, 644, 845
BspMAI CTGCAG 1 cut(s) 793
BspMI ACCTGC 1 cut(s) 512
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 6 cut(s) 180, 222, 340, 432, 838, 851
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 2 cut(s) 80, 402
BssMI GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 116, 137
Bst4CI ACNGT 2 cut(s) 364, 766
Bst6I CTCTTC 1 cut(s) 388
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 355, 374
BstFNI CGCG 1 cut(s) 528
BstKTI GATC 8 cut(s) 175, 217, 335, 427, 439, 489, 547, 846
BstMAI GTCTC 3 cut(s) 150, 239, 755
BstMBI GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
BstMWI GCNNNNNNNGC 2 cut(s) 518, 788
BstNI CCWGG 2 cut(s) 116, 137
BstSCI CCNGG 4 cut(s) 114, 135, 168, 401
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 6 cut(s) 278, 369, 769, 772, 775, 798
BstX2I RGATCY 3 cut(s) 172, 436, 843
BstYI RGATCY 3 cut(s) 172, 436, 843
BsuRI GGCC 6 cut(s) 11, 154, 421, 483, 611, 692
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 2 cut(s) 355, 374
BveI ACCTGC 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 609
CseI GACGC 1 cut(s) 132
CviAII CATG 3 cut(s) 107, 128, 343
DdeI CTNAG 1 cut(s) 149
DpnI GATC 8 cut(s) 174, 216, 334, 426, 438, 488, 546, 845
DpnII GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
EaeI YGGCCR 3 cut(s) 9, 419, 481
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 114, 135
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 3 cut(s) 110, 131, 346
FaiI YATR 9 cut(s) 108, 129, 188, 272, 330, 344, 713, 724, 800
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 106, 127, 342
Fnu4HI GCNGC 6 cut(s) 267, 383, 783, 786, 789, 812
FokI GGATG 2 cut(s) 362, 381
Fsp4HI GCNGC 6 cut(s) 267, 383, 783, 786, 789, 812
FspBI CTAG 6 cut(s) 18, 68, 440, 513, 638, 647
GluI GCNGC 6 cut(s) 267, 383, 783, 786, 789, 812
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 6 cut(s) 11, 154, 421, 483, 611, 692
HapII CCGG 3 cut(s) 169, 402, 422
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 110, 131, 346
HinfI GANTC 2 cut(s) 220, 736
HpaII CCGG 3 cut(s) 169, 402, 422
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 577, 652
Hpy188I TCNGA 2 cut(s) 150, 219
Hpy188III TCNNGA 3 cut(s) 428, 505, 562
Hpy8I GTNNAC 2 cut(s) 577, 652
Hpy99I CGWCG 2 cut(s) 261, 393
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 2 cut(s) 364, 766
HpyCH4IV ACGT 2 cut(s) 388, 807
HpyCH4V TGCA 4 cut(s) 323, 385, 769, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 788
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 388, 807
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 110, 131, 346
Kzo9I GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
LmnI GCTCC 2 cut(s) 71, 518
Lsp1109I GCAGC 6 cut(s) 278, 369, 769, 772, 775, 798
MaeI CTAG 6 cut(s) 18, 68, 440, 513, 638, 647
MaeII ACGT 2 cut(s) 388, 807
MaeIII GTNAC 1 cut(s) 533
MalI GATC 8 cut(s) 174, 216, 334, 426, 438, 488, 546, 845
MboI GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
MboII GAAGA 1 cut(s) 405
MflI RGATCY 3 cut(s) 172, 436, 843
MhlI GDGCHC 1 cut(s) 76
MlsI TGGCCA 1 cut(s) 11
MluCI AATT 1 cut(s) 771
MluNI TGGCCA 1 cut(s) 11
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 2 cut(s) 346, 650
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 3 cut(s) 169, 402, 422
MspR9I CCNGG 4 cut(s) 116, 137, 170, 403
MvaI CCWGG 2 cut(s) 116, 137
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 2 cut(s) 518, 788
NciI CCSGG 2 cut(s) 170, 403
NdeII GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 110, 131, 346
NlaIV GGNNCC 3 cut(s) 400, 644, 845
NmeAIII GCCGAG 2 cut(s) 180, 668
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PfeI GAWTC 1 cut(s) 736
PfoI TCCNGGA 1 cut(s) 114
PkrI GCNGC 6 cut(s) 268, 384, 784, 787, 790, 813
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 114, 135
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 114, 135
PspN4I GGNNCC 3 cut(s) 400, 644, 845
PspPI GGNCC 1 cut(s) 609
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 3 cut(s) 172, 436, 843
SatI GCNGC 6 cut(s) 267, 383, 783, 786, 789, 812
Sau3AI GATC 8 cut(s) 172, 214, 332, 424, 436, 486, 544, 843
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 4 cut(s) 116, 137, 170, 403
SduI GDGCHC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 789
Sse9I AATT 1 cut(s) 771
SsiI CCGC 3 cut(s) 77, 242, 540
SspMI CTAG 6 cut(s) 18, 68, 440, 513, 638, 647
StyD4I CCNGG 4 cut(s) 114, 135, 168, 401
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 364, 766
TaiI ACGT 2 cut(s) 391, 810
TaqI TCGA 5 cut(s) 309, 335, 391, 489, 506
TasI AATT 1 cut(s) 771
TfiI GAWTC 1 cut(s) 736
TseI GCWGC 6 cut(s) 266, 382, 782, 785, 788, 811
TspGWI ACGGA 1 cut(s) 581
XspI CTAG 6 cut(s) 18, 68, 440, 513, 638, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.