Rh5AG250200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001119
Physical Location & Seq
Forward (+)
31737390 .. 31747724
10335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG250200.1

Sequence Viewer

Length: 804 bp
ATGGTTGCTGTTTGGGACGGTAGTTTTGATGTTTGGGAGGCAGATCTGAGGCCGAGCTCTATCGGCGTGGCTCTGGTTTGGTCTGAATTGGATCGGCGCGACTGGGTTTTGGATCGTGGTCGTCAGACTACCGACAATGGTGGGGATTGCACTATCGCTGTGGTTGGTGGGTGGGAACGGAAGGTTATATGCACCTCCTCTGGTTTTGGTGGCTCGTTCGGCGGTTATAGTTCTGATTGTTTTGGGTGTGACGGTTTTGTTTCTGCGTCTACGTTCTGGGGTTGGCGTGAGCGTGGTGGCGGTCATATGGCTTCGGGGTGTCTGGAGATGAGGACTGAGCTGATCTTCTTAGGCCCGAACCATCCGATGTTAGGTGGCGGTTCAGGGGTTTGGGATTTGAACTTGGGAACGTCTTGGTCTTGTTGCAAGGGTTCATTTTCCCGGGTGGATGTAGGCGGAGGTGAGGTTGCCGTCGGCGATGGATGCAGCAAGATGTCTGTAGGCGGTGATGCACGGGAGGATGCTGCTAGGGCTTTTCCCAATTGGGCTTCCAGCTGGGCTGTTCTGGATGTGGGCCTCTCTGTGGGTTTTAGGATTGGGTTGCTTCGGGCCCAAAAGGCCTTTAGGGCTGCCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCCTTGTTTTGGGCTCCCCGAGGTTGGGCTTCCCAGAGGTGGAGATACCACCAGTCTTTCCCAGCCTGCCCCATCAACTTGTAGCTCGATTTGTAGGTCCAAGAAGTGCGTTCAAATTCACCGTGGGCCTTTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

28.27

Weight (kDa)

5.94

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 99
AciI CCGC 5 cut(s) 222, 300, 378, 456, 504
AclWI GGATC 2 cut(s) 99, 120
AcsI RAATTY 1 cut(s) 780
AfiI CCNNNNNNNGG 7 cut(s) 371, 583, 645, 674, 689, 690, 704
AgsI TTSAA 2 cut(s) 400, 779
AluBI AGCT 4 cut(s) 57, 340, 555, 750
AluI AGCT 4 cut(s) 57, 340, 555, 750
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 2 cut(s) 99, 120
Ama87I CYCGRG 2 cut(s) 441, 683
AoxI GGCC 6 cut(s) 50, 352, 574, 609, 618, 791
ApaI GGGCCC 1 cut(s) 613
ApeKI GCWGC 3 cut(s) 486, 524, 629
ApoI RAATTY 1 cut(s) 780
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 6 cut(s) 353, 574, 609, 610, 762, 791
AsuC2I CCSGG 2 cut(s) 442, 443
AsuHPI GGTGA 3 cut(s) 473, 518, 776
AvaI CYCGRG 2 cut(s) 441, 683
AvaII GGWCC 1 cut(s) 762
BaeGI GKGCMC 1 cut(s) 613
BanII GRGCYC 4 cut(s) 59, 613, 667, 681
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 498, 511, 616
BccI CCATC 3 cut(s) 369, 473, 745
BceAI ACGGC 1 cut(s) 455
BcnI CCSGG 2 cut(s) 442, 443
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 498
BglI GCCNNNNNGGC 2 cut(s) 617, 626
BglII AGATCT 1 cut(s) 43
BisI GCNGC 3 cut(s) 487, 525, 630
BlsI GCNGC 3 cut(s) 488, 526, 631
Bme1390I CCNGG 2 cut(s) 442, 443
Bme18I GGWCC 1 cut(s) 762
BmeT110I CYCGRG 2 cut(s) 441, 683
BmgT120I GGNCC 6 cut(s) 353, 574, 609, 610, 762, 791
BmiI GGNNCC 3 cut(s) 611, 666, 680
BmrFI CCNGG 2 cut(s) 442, 443
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 3 cut(s) 473, 499, 511
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 442, 443
BsaJI CCNNGG 3 cut(s) 441, 684, 787
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 7 cut(s) 371, 583, 645, 674, 689, 690, 704
Bse1I ACTGG 2 cut(s) 107, 717
BseDI CCNNGG 3 cut(s) 441, 684, 787
BseGI GGATG 5 cut(s) 361, 454, 488, 526, 574
BseLI CCNNNNNNNGG 7 cut(s) 371, 583, 645, 674, 689, 690, 704
BseMII CTCAG 2 cut(s) 38, 327
BseNI ACTGG 2 cut(s) 107, 717
BseRI GAGGAG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 613
BseXI GCAGC 3 cut(s) 498, 511, 616
BseYI CCCAGC 3 cut(s) 555, 645, 726
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 6 cut(s) 52, 354, 576, 611, 620, 793
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 2 cut(s) 441, 683
BsiSI CCGG 1 cut(s) 442
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 7 cut(s) 371, 583, 645, 674, 689, 690, 704
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 6 cut(s) 52, 354, 576, 611, 620, 793
BsoBI CYCGRG 2 cut(s) 441, 683
Bsp120I GGGCCC 1 cut(s) 609
Bsp1286I GDGCHC 4 cut(s) 59, 613, 667, 681
Bsp143I GATC 4 cut(s) 43, 91, 112, 342
BspACI CCGC 5 cut(s) 222, 300, 378, 456, 504
BspANI GGCC 6 cut(s) 52, 354, 576, 611, 620, 793
BspCNI CTCAG 2 cut(s) 39, 328
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 611, 666, 680
BspPI GGATC 2 cut(s) 99, 120
BsrI ACTGG 2 cut(s) 107, 717
BssECI CCNNGG 3 cut(s) 441, 684, 787
BssMI GATC 4 cut(s) 43, 91, 112, 342
Bst4CI ACNGT 4 cut(s) 20, 254, 656, 788
BstC8I GCNNGC 1 cut(s) 732
BstDEI CTNAG 3 cut(s) 47, 336, 349
BstDSI CCRYGG 1 cut(s) 787
BstF5I GGATG 5 cut(s) 361, 454, 488, 526, 574
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 46, 94, 115, 345
BstMBI GATC 4 cut(s) 43, 91, 112, 342
BstMWI GCNNNNNNNGC 6 cut(s) 63, 219, 483, 530, 617, 626
BstSCI CCNGG 2 cut(s) 440, 441
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 613
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 498, 511, 616
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 6 cut(s) 52, 354, 576, 611, 620, 793
BtgI CCRYGG 1 cut(s) 787
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 5 cut(s) 361, 454, 488, 526, 574
Cac8I GCNNGC 1 cut(s) 732
CfoI GCGC 1 cut(s) 99
Cfr13I GGNCC 6 cut(s) 353, 574, 609, 610, 762, 791
Cfr9I CCCGGG 1 cut(s) 441
CseI GACGC 1 cut(s) 255
DdeI CTNAG 3 cut(s) 47, 336, 349
DpnI GATC 4 cut(s) 45, 93, 114, 344
DpnII GATC 4 cut(s) 43, 91, 112, 342
DraI TTTAAA 1 cut(s) 798
EciI GGCGGA 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 620
Eco24I GRGCYC 4 cut(s) 59, 613, 667, 681
Eco47I GGWCC 1 cut(s) 762
Eco53kI GAGCTC 1 cut(s) 57
Eco88I CYCGRG 2 cut(s) 441, 683
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 4 cut(s) 59, 613, 667, 681
FaiI YATR 5 cut(s) 188, 190, 228, 306, 308
FaqI GGGAC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 306
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 3 cut(s) 487, 525, 630
FokI GGATG 5 cut(s) 348, 461, 495, 533, 581
FriOI GRGCYC 4 cut(s) 59, 613, 667, 681
Fsp4HI GCNGC 3 cut(s) 487, 525, 630
FspBI CTAG 1 cut(s) 528
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 487, 525, 630
GsaI CCCAGC 3 cut(s) 559, 649, 730
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 6 cut(s) 52, 354, 576, 611, 620, 793
HapII CCGG 1 cut(s) 442
HgaI GACGC 1 cut(s) 255
HhaI GCGC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HpaII CCGG 1 cut(s) 442
HphI GGTGA 3 cut(s) 473, 518, 776
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 5 cut(s) 48, 85, 126, 235, 366
Hpy188III TCNNGA 2 cut(s) 323, 566
Hpy8I GTNNAC 1 cut(s) 270
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 4 cut(s) 20, 254, 656, 788
HpyCH4IV ACGT 2 cut(s) 272, 410
HpyCH4V TGCA 5 cut(s) 150, 192, 426, 486, 512
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 219, 483, 530, 617, 626
HpyF3I CTNAG 3 cut(s) 47, 336, 349
HpySE526I ACGT 2 cut(s) 272, 410
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 4 cut(s) 43, 91, 112, 342
LmnI GCTCC 2 cut(s) 670, 684
Lsp1109I GCAGC 3 cut(s) 498, 511, 616
LweI GCATC 3 cut(s) 473, 499, 511
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 272, 410
MaeIII GTNAC 1 cut(s) 248
MalI GATC 4 cut(s) 45, 93, 114, 344
MboI GATC 4 cut(s) 43, 91, 112, 342
MboII GAAGA 1 cut(s) 337
MfeI CAATTG 1 cut(s) 541
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 4 cut(s) 59, 613, 667, 681
MluCI AATT 3 cut(s) 86, 541, 780
MseI TTAA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 2 cut(s) 442, 443
MunI CAATTG 1 cut(s) 541
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 63, 219, 483, 530, 617, 626
NciI CCSGG 2 cut(s) 442, 443
NdeI CATATG 1 cut(s) 306
NdeII GATC 4 cut(s) 43, 91, 112, 342
NlaIV GGNNCC 3 cut(s) 611, 666, 680
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 620
PkrI GCNGC 3 cut(s) 488, 526, 631
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 3 cut(s) 555, 645, 726
PspN4I GGNNCC 3 cut(s) 611, 666, 680
PspOMI GGGCCC 1 cut(s) 609
PspPI GGNCC 6 cut(s) 353, 574, 609, 610, 762, 791
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 797
SatI GCNGC 3 cut(s) 487, 525, 630
Sau3AI GATC 4 cut(s) 43, 91, 112, 342
Sau96I GGNCC 6 cut(s) 353, 574, 609, 610, 762, 791
ScrFI CCNGG 2 cut(s) 442, 443
SduI GDGCHC 4 cut(s) 59, 613, 667, 681
SfaNI GCATC 3 cut(s) 473, 499, 511
SfcI CTRYAG 1 cut(s) 498
SfiI GGCCNNNNNGGCC 1 cut(s) 617
SinI GGWCC 1 cut(s) 762
SmaI CCCGGG 1 cut(s) 443
Sse9I AATT 3 cut(s) 86, 541, 780
SseBI AGGCCT 1 cut(s) 620
SsiI CCGC 5 cut(s) 222, 300, 378, 456, 504
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 59
StuI AGGCCT 1 cut(s) 620
StyD4I CCNGG 2 cut(s) 440, 441
TaaI ACNGT 4 cut(s) 20, 254, 656, 788
TaiI ACGT 2 cut(s) 275, 413
TaqI TCGA 1 cut(s) 752
TasI AATT 3 cut(s) 86, 541, 780
Tru1I TTAA 1 cut(s) 797
Tru9I TTAA 1 cut(s) 797
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 3 cut(s) 486, 524, 629
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 762
XapI RAATTY 1 cut(s) 780
XmaI CCCGGG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.