Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

25659635 .. 25659954

Gene Structure 320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 320 bp

ATGGCTGGTGCCACAAATGGGATCGCAGCGTTGTCCTTTTCCAGCGTGTTTTATGTCAACATGGGGCGTGCCGATGGTCGTCTTTTTCTGCTTTTCCTTCTCCTTGTACTTGCTGGCTGCAGTGATGGAGGAAGCGTGATGGATCCGGATATGCTTTTTATTCCTGCTAGGAGGATCGATAGAGGTGCCATCGATCCTTGGAGGTGGAGGGGGTTCCGGCTCTCAGGTTCTCGTGTTGTCGACATTAGAGGCGTGAACGATAGCGTCAGTGCTTGGGTTGATTACTGGGCCGCAGGTGGGCATGGGACCGATGGTGGCTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.35

Weight (kDa)

6.53

Isoelectric Point (pI)

17.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	8, 185
AccI	GTMKAC	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	5 cut(s)	29, 137, 150, 182, 188
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	2 cut(s)	18, 297
AlwI	GGATC	5 cut(s)	29, 137, 150, 182, 188
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	26, 117
AspS9I	GGNCC	2 cut(s)	288, 306
AvaII	GGWCC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	2 cut(s)	8, 185
BauI	CACGAG	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	38, 104
BccI	CCATC	5 cut(s)	68, 119, 133, 197, 305
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	3 cut(s)	27, 118, 291
BlsI	GCNGC	3 cut(s)	28, 119, 292
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	288, 306
BmiI	GGNNCC	5 cut(s)	10, 144, 187, 215, 307
BmrI	ACTGGG	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	295
Bsa29I	ATCGAT	2 cut(s)	177, 192
BsaJI	CCNNGG	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 297
Bse1I	ACTGG	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	145
BseCI	ATCGAT	2 cut(s)	177, 192
BseDI	CCNNGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	2 cut(s)	18, 297
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	38, 104
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	2 cut(s)	8, 185
BshVI	ATCGAT	2 cut(s)	177, 192
BsiSI	CCGG	2 cut(s)	146, 217
BslI	CCNNNNNNNGG	2 cut(s)	18, 297
BsnI	GGCC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	21, 142, 174, 193
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	236
BspDI	ATCGAT	2 cut(s)	177, 192
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	5 cut(s)	10, 144, 187, 215, 307
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	5 cut(s)	29, 137, 150, 182, 188
BspT107I	GGYRCC	2 cut(s)	8, 185
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	4 cut(s)	21, 142, 174, 193
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	69, 115
BstDEI	CTNAG	1 cut(s)	223
BstKTI	GATC	4 cut(s)	24, 145, 177, 196
BstMBI	GATC	4 cut(s)	21, 142, 174, 193
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	38, 104
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
Bsu15I	ATCGAT	2 cut(s)	177, 192
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	2 cut(s)	177, 192
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 274
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	69, 115
Cfr13I	GGNCC	2 cut(s)	288, 306
ClaI	ATCGAT	2 cut(s)	177, 192
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	61, 302
CviJI	RGCY	5 cut(s)	5, 117, 220, 290, 318
CviKI_1	RGCY	5 cut(s)	5, 117, 220, 290, 318
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	4 cut(s)	23, 144, 176, 195
DpnII	GATC	4 cut(s)	21, 142, 174, 193
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	2 cut(s)	64, 305
FaiI	YATR	4 cut(s)	54, 62, 152, 303
FatI	CATG	2 cut(s)	60, 301
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	27, 118, 291
Fsp4HI	GCNGC	3 cut(s)	27, 118, 291
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	27, 118, 291
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	146, 217
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	64, 305
HincII	GTYRAC	2 cut(s)	58, 241
HindII	GTYRAC	2 cut(s)	58, 241
HpaII	CCGG	2 cut(s)	146, 217
Hpy166II	GTNNAC	3 cut(s)	58, 241, 256
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	3 cut(s)	58, 241, 256
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	64, 305
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	21, 142, 174, 193
LpnPI	CCDG	8 cut(s)	55, 99, 159, 177, 210, 230, 271, 279
Lsp1109I	GCAGC	2 cut(s)	38, 104
MaeI	CTAG	1 cut(s)	168
MalI	GATC	4 cut(s)	23, 144, 176, 195
MboI	GATC	4 cut(s)	21, 142, 174, 193
MflI	RGATCY	1 cut(s)	142
MnlI	CCTC	6 cut(s)	122, 165, 176, 195, 201, 242
MroI	TCCGGA	1 cut(s)	145
MspI	CCGG	2 cut(s)	146, 217
NdeII	GATC	4 cut(s)	21, 142, 174, 193
NlaIII	CATG	2 cut(s)	64, 305
NlaIV	GGNNCC	5 cut(s)	10, 144, 187, 215, 307
PaqCI	CACCTGC	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	28, 119, 292
PspN4I	GGNNCC	5 cut(s)	10, 144, 187, 215, 307
PspPI	GGNCC	2 cut(s)	288, 306
PstI	CTGCAG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	3 cut(s)	27, 118, 291
Sau3AI	GATC	4 cut(s)	21, 142, 174, 193
Sau96I	GGNCC	2 cut(s)	288, 306
SetI	ASST	4 cut(s)	187, 206, 229, 298
SfcI	CTRYAG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	306
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	197
TaqI	TCGA	3 cut(s)	177, 192, 240
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	1 cut(s)	293
TscAI	CASTG	2 cut(s)	127, 274
TseI	GCWGC	2 cut(s)	26, 117
TspRI	CASTG	2 cut(s)	127, 274
VpaK11BI	GGWCC	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.