Rh6AG241100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001119
Physical Location & Seq
Forward (+)
42755641 .. 42756600
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG241100.1

Sequence Viewer

Length: 237 bp
ATGGTGGTGTCTGTGGGTGACGCGACCCGGGTTCAGGTCTTCATGCTTGGCAAGGCAGGTTGCAAGTGGCGGTCAAGAGATGCCGCAGTGGTTTGGGAGATCCTTGACATCAGTTGGTTTGGAGGTCAGGCTGCCGGTGTGTTGGAGATGATAGTGGGCTGCTGTGGCCGGGTATCCATAGCAATTAGAACCCTACTGGGCCTAGGGTTTGGGCTTCCCATCCTTTTGGCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.31

Weight (kDa)

8.63

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 47
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 70, 84
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 34
AlwI GGATC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 2 cut(s) 166, 199
ApeKI GCWGC 2 cut(s) 131, 159
AspA2I CCTAGG 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 3 cut(s) 28, 29, 170
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 118, 146
BccI CCATC 1 cut(s) 227
BciVI GTATCC 1 cut(s) 184
BcnI CCSGG 3 cut(s) 28, 29, 170
BfaI CTAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 47
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 3 cut(s) 84, 132, 160
BlnI CCTAGG 1 cut(s) 202
BlsI GCNGC 3 cut(s) 85, 133, 161
Bme1390I CCNGG 3 cut(s) 28, 29, 170
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 28, 29, 170
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 70
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 31
BpuMI CCSGG 3 cut(s) 28, 29, 170
BsaJI CCNNGG 2 cut(s) 27, 202
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 27, 202
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 118, 146
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 2 cut(s) 168, 201
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 3 cut(s) 28, 135, 169
BslI CCNNNNNNNGG 1 cut(s) 34
BsnI GGCC 2 cut(s) 168, 201
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 70, 84
BspANI GGCC 2 cut(s) 168, 201
BspFNI CGCG 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 201
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 27, 202
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstSCI CCNGG 3 cut(s) 26, 27, 168
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 118, 146
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 99
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 168, 201
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 199
Cfr9I CCCGGG 1 cut(s) 27
CseI GACGC 1 cut(s) 29
CviAII CATG 1 cut(s) 43
CviJI RGCY 5 cut(s) 131, 159, 168, 201, 214
CviKI_1 RGCY 5 cut(s) 131, 159, 168, 201, 214
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 44, 179, 232
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 84, 132, 160
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 84, 132, 160
FspBI CTAG 1 cut(s) 203
GluI GCNGC 3 cut(s) 84, 132, 160
HaeIII GGCC 2 cut(s) 168, 201
HapII CCGG 3 cut(s) 28, 135, 169
HgaI GACGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 46
HpaII CCGG 3 cut(s) 28, 135, 169
HphI GGTGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 7 cut(s) 20, 41, 42, 113, 148, 182, 182
Lsp1109I GCAGC 2 cut(s) 118, 146
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 1 cut(s) 116
MspI CCGG 3 cut(s) 28, 135, 169
MspR9I CCNGG 3 cut(s) 28, 29, 170
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 165
NciI CCSGG 3 cut(s) 28, 29, 170
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 85, 133, 161
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 99
SatI GCNGC 3 cut(s) 84, 132, 160
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 28, 29, 170
SetI ASST 3 cut(s) 39, 61, 127
SfaNI GCATC 1 cut(s) 70
SmaI CCCGGG 1 cut(s) 29
Sse9I AATT 1 cut(s) 183
SsiI CCGC 2 cut(s) 70, 84
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 3 cut(s) 26, 27, 168
StyI CCWWGG 1 cut(s) 202
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 86
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 17
TseI GCWGC 2 cut(s) 131, 159
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 31
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 1 cut(s) 93
XmaI CCCGGG 1 cut(s) 27
XmaJI CCTAGG 1 cut(s) 202
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.