Rh7BG228600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001119
Physical Location & Seq
Forward (+)
19868872 .. 19869132
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG228600.1

Sequence Viewer

Length: 261 bp
ATGGTTGTTATTAATTTGGATGACAGATGTTTGGAATTCAAGCCAGATTTTGCTGGTTTTGGATTGAAGAACATGGTGGATGATCGGAATGTTTGCACTGATGTTAGACATGACGGATCACTGCTGCATCGAAGAGTCGTCAAAGTTGGGTTGGCCTCGTCGGAGTCAGAAGTCTTCTGGCTGCGGGAGGACGTCGGTGCTCACGGCTTGGAGCGTGGTGGTGGTGCCTGCAGGGTGCCCTTATCATTTTTGAGGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.59

Weight (kDa)

6.26

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 2 cut(s) 224, 235
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 192
AgsI TTSAA 2 cut(s) 40, 67
Alw21I GWGCWC 1 cut(s) 202
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 2 cut(s) 124, 181
ApoI RAATTY 1 cut(s) 35
AseI ATTAAT 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 240
BanI GGYRCC 2 cut(s) 224, 235
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 111, 168
BceAI ACGGC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 229
BisI GCNGC 2 cut(s) 125, 182
BlsI GCNGC 2 cut(s) 126, 183
BmiI GGNNCC 2 cut(s) 226, 237
BmsI GCATC 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 192
BseGI GGATG 2 cut(s) 25, 85
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 2 cut(s) 111, 168
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 2 cut(s) 224, 235
BsiHKAI GWGCWC 1 cut(s) 202
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 202, 240
Bsp143I GATC 2 cut(s) 82, 116
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 226, 237
BspMAI CTGCAG 1 cut(s) 233
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 2 cut(s) 224, 235
BssMI GATC 2 cut(s) 82, 116
BssNI GRCGYC 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 258
BstF5I GGATG 2 cut(s) 25, 85
BstKTI GATC 2 cut(s) 85, 119
BstMBI GATC 2 cut(s) 82, 116
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 111, 168
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 2 cut(s) 25, 85
BtsI GCAGTG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 96, 119
Cac8I GCNNGC 1 cut(s) 229
CviAII CATG 2 cut(s) 73, 110
CviJI RGCY 4 cut(s) 43, 155, 181, 207
CviKI_1 RGCY 4 cut(s) 43, 155, 181, 207
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 84, 118
DpnII GATC 2 cut(s) 82, 116
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 35
FaeI CATG 2 cut(s) 76, 113
FaiI YATR 2 cut(s) 74, 111
FatI CATG 2 cut(s) 72, 109
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 125, 182
FokI GGATG 2 cut(s) 32, 92
Fsp4HI GCNGC 2 cut(s) 125, 182
GluI GCNGC 2 cut(s) 125, 182
HaeIII GGCC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 2 cut(s) 76, 113
HinfI GANTC 2 cut(s) 135, 164
Hpy188I TCNGA 3 cut(s) 87, 163, 169
Hpy99I CGWCG 2 cut(s) 163, 197
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 96, 127, 231
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 2 cut(s) 76, 113
Kzo9I GATC 2 cut(s) 82, 116
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 5 cut(s) 39, 57, 163, 217, 241
Lsp1109I GCAGC 2 cut(s) 111, 168
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 192
MalI GATC 2 cut(s) 84, 118
MboI GATC 2 cut(s) 82, 116
MboII GAAGA 3 cut(s) 79, 144, 166
MhlI GDGCHC 2 cut(s) 202, 240
MluCI AATT 2 cut(s) 13, 35
MlyI GAGTC 2 cut(s) 144, 173
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 166, 181, 246
MseI TTAA 1 cut(s) 12
NdeII GATC 2 cut(s) 82, 116
NlaIII CATG 2 cut(s) 76, 113
NlaIV GGNNCC 2 cut(s) 226, 237
PkrI GCNGC 2 cut(s) 126, 183
PleI GAGTC 2 cut(s) 143, 172
PpsI GAGTC 2 cut(s) 143, 172
PshBI ATTAAT 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 226, 237
PstI CTGCAG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 125, 182
Sau3AI GATC 2 cut(s) 82, 116
SbfI CCTGCAGG 1 cut(s) 233
SchI GAGTC 2 cut(s) 144, 173
SdaI CCTGCAGG 1 cut(s) 233
SduI GDGCHC 2 cut(s) 202, 240
SetI ASST 1 cut(s) 195
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 229
Sse8387I CCTGCAGG 1 cut(s) 233
Sse9I AATT 2 cut(s) 13, 35
SsiI CCGC 1 cut(s) 184
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 130
TasI AATT 2 cut(s) 13, 35
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 103, 126
TseI GCWGC 2 cut(s) 124, 181
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 103, 126
VspI ATTAAT 1 cut(s) 12
XapI RAATTY 1 cut(s) 35
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.