Rh6AG365600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001119
Physical Location & Seq
Reverse (-)
56437056 .. 56437475
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG365600.1

Sequence Viewer

Length: 420 bp
ATGGCCATGGCCATTGCTAGCCTTGTGGCTTATTGTTTCTTGCTTCTTCTTGCTTTCGTACTGTTGCTTGGAGCGCCGCCTTGGATTTGGTTCCCAGCGGTTGTTGTCTGGGACGGAAGTTATGGTTTTCTGGTAGCTTCTCTGAGGCCGAGCTCTGACAGCGTGGACCTGAGTTGGTATGTATCGGATCTTTACGACTGGGTCTCGGATCGGAATTATCCGGCTGGCCTCTTTGCAGTGGTTGGGTGTCGTCGTAGGGCGGAAATGGTCGTTGATTTGGATGACAGATGTTCGGGTTTCAAGCCAGATTTTATCGGTTCTGGTTTGAAGGACATGGTGGATGATCGCAATGGTTGCACTGACATTAGACATGGGGGAGTGCTGCAACGTCGAAGAGTGGCCGGCGTTGGGTTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.31

Weight (kDa)

5.18

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 98, 260
AclWI GGATC 2 cut(s) 195, 216
AcoI YGGCCR 3 cut(s) 3, 9, 399
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 408
AgsI TTSAA 2 cut(s) 301, 328
AluBI AGCT 2 cut(s) 137, 153
AluI AGCT 2 cut(s) 137, 153
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 2 cut(s) 195, 216
AoxI GGCC 6 cut(s) 3, 9, 146, 226, 399, 414
ApeKI GCWGC 1 cut(s) 382
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 166
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 2 cut(s) 5, 11
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 2 cut(s) 77, 383
BlsI GCNGC 2 cut(s) 78, 384
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 208
BmtI GCTAGC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 12, 355
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 2 cut(s) 286, 346
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMI GCAATG 2 cut(s) 12, 355
BseMII CTCAG 2 cut(s) 134, 161
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 6 cut(s) 5, 11, 148, 228, 401, 416
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 221, 402
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 408
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 6 cut(s) 5, 11, 148, 228, 401, 416
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 187, 208, 343
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 77, 98, 260
BspANI GGCC 6 cut(s) 5, 11, 148, 228, 401, 416
BspCNI CTCAG 2 cut(s) 135, 162
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 195, 216
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 12, 355
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 2 cut(s) 6, 80
BssMI GATC 3 cut(s) 187, 208, 343
BssT1I CCWWGG 2 cut(s) 6, 80
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 19, 226, 403
BstDEI CTNAG 2 cut(s) 143, 170
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 286, 346
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 3 cut(s) 190, 211, 346
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 187, 208, 343
BstMWI GCNNNNNNNGC 3 cut(s) 73, 159, 354
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 6 cut(s) 5, 11, 148, 228, 401, 416
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 286, 346
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 357
Cac8I GCNNGC 3 cut(s) 19, 226, 403
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 7, 334, 371
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 2 cut(s) 143, 170
DpnI GATC 3 cut(s) 189, 210, 345
DpnII GATC 3 cut(s) 187, 208, 343
EaeI YGGCCR 3 cut(s) 3, 9, 399
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 6, 80
Eco24I GRGCYC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 6, 80
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 6, 80
FaeI CATG 3 cut(s) 10, 337, 374
FaiI YATR 5 cut(s) 8, 123, 180, 335, 372
FaqI GGGAC 1 cut(s) 125
FatI CATG 3 cut(s) 6, 333, 370
Fnu4HI GCNGC 2 cut(s) 77, 383
FokI GGATG 2 cut(s) 293, 353
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 77, 383
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 77, 383
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 6 cut(s) 5, 11, 148, 228, 401, 416
HapII CCGG 2 cut(s) 221, 402
HhaI GCGC 1 cut(s) 76
Hin1II CATG 3 cut(s) 10, 337, 374
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HpaII CCGG 2 cut(s) 221, 402
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 144, 157, 187, 208, 213
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 2 cut(s) 255, 393
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 236, 357, 385
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 159, 354
HpyF3I CTNAG 2 cut(s) 143, 170
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 10, 337, 374
HspAI GCGC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 401
KroNI GCCGGC 1 cut(s) 403
Kzo9I GATC 3 cut(s) 187, 208, 343
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 1 cut(s) 369
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 388
MalI GATC 3 cut(s) 189, 210, 345
MboI GATC 3 cut(s) 187, 208, 343
MboII GAAGA 2 cut(s) 38, 405
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 2 cut(s) 5, 11
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 2 cut(s) 5, 11
MnlI CCTC 2 cut(s) 138, 239
Mox20I TGGCCA 2 cut(s) 5, 11
MroNI GCCGGC 1 cut(s) 401
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 221, 402
MwoI GCNNNNNNNGC 3 cut(s) 73, 159, 354
NaeI GCCGGC 1 cut(s) 403
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 187, 208, 343
NgoMIV GCCGGC 1 cut(s) 401
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 10, 337, 374
NlaIV GGNNCC 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 403
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 78, 384
Psp124BI GAGCTC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 155
SatI GCNGC 2 cut(s) 77, 383
Sau3AI GATC 3 cut(s) 187, 208, 343
Sau96I GGNCC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 155
SetI ASST 4 cut(s) 139, 155, 171, 391
SinI GGWCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 214
SsiI CCGC 3 cut(s) 77, 98, 260
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 155
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 391
TasI AATT 1 cut(s) 214
TauI GCSGC 1 cut(s) 79
TscAI CASTG 2 cut(s) 243, 364
TseI GCWGC 1 cut(s) 382
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 2 cut(s) 243, 364
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 166
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.