RLG00000018368

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001119
Physical Location & Seq
Reverse (-)
28868748 .. 28869331
584 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018368

Sequence Viewer

Length: 420 bp
ATGGCCATTGCTAGCCATGTGGCTAACTGTCTCTTTCTTCTTGTTGCATTCGATCTATCGCTTGGAGTGCCACCTTGGATTGGGATCCCTGCGGTTGCTGTTTGGGATGACAATGTTGGTGTTTTGGTGGCTGATCTTATTCCGAGTTTTAACCTCATGGATTTGAGTGGTTCTGCTTCGAATCAACGGGCAGAGGGTTGTCTTGGCCTCTGCCGTTCATGTAGGCGGCGGAGCACCAACTTGGTTGTCAAGCTCAGAGCAATGGAGGACGACGATTTGGCTTGGTTTACTTTCGTTGGTGTTACCGGAGTCTGGCTGAGTCAACCTAGTCGTGGTGGCTTGTCAGTGGATATGCGCAGGTGCTTTAAAGCAACGACGCGAGTAAGAGGTGGTCGTGGATTGGACGCTGGGGTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.91

Weight (kDa)

8.39

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
Acc16I TGCGCA 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 379
AciI CCGC 3 cut(s) 92, 226, 229
AclWI GGATC 2 cut(s) 79, 92
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 3 cut(s) 80, 312, 332
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 2 cut(s) 79, 92
AoxI GGCC 2 cut(s) 3, 205
AspLEI GCGC 1 cut(s) 357
AsuII TTCGAA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 3 cut(s) 12, 327, 418
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 86
BmtI GCTAGC 1 cut(s) 15
Bpu14I TTCGAA 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 312, 332
Bse3DI GCAATG 2 cut(s) 6, 267
Bse8I GATNNNNATC 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 3 cut(s) 80, 312, 332
BseMI GCAATG 2 cut(s) 6, 267
BseMII CTCAG 2 cut(s) 268, 308
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 5, 207
BsiHKAI GWGCWC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 3 cut(s) 80, 312, 332
BsmAI GTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 2 cut(s) 5, 207
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 3 cut(s) 52, 84, 133
BspACI CCGC 3 cut(s) 92, 226, 229
BspANI GGCC 2 cut(s) 5, 207
BspCNI CTCAG 2 cut(s) 267, 309
BspFNI CGCG 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 348
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 2 cut(s) 79, 92
BspT104I TTCGAA 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 6, 267
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 52, 84, 133
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 254, 317
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 3 cut(s) 55, 87, 136
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 3 cut(s) 52, 84, 133
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BsuRI GGCC 2 cut(s) 5, 207
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 357
CseI GACGC 2 cut(s) 385, 413
CviAII CATG 3 cut(s) 17, 157, 219
CviJI RGCY 9 cut(s) 5, 15, 23, 131, 207, 253, 281, 316, 339
CviKI_1 RGCY 9 cut(s) 5, 15, 23, 131, 207, 253, 281, 316, 339
DdeI CTNAG 2 cut(s) 254, 317
DpnI GATC 3 cut(s) 54, 86, 135
DpnII GATC 3 cut(s) 52, 84, 133
DraI TTTAAA 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 20, 160, 222
FaiI YATR 4 cut(s) 18, 158, 220, 353
FatI CATG 3 cut(s) 16, 156, 218
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 3 cut(s) 12, 327, 418
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 2 cut(s) 5, 207
HapII CCGG 1 cut(s) 306
HgaI GACGC 2 cut(s) 385, 413
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 20, 160, 222
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 3 cut(s) 181, 309, 319
HpaII CCGG 1 cut(s) 306
Hpy166II GTNNAC 2 cut(s) 288, 323
Hpy188I TCNGA 2 cut(s) 144, 257
Hpy8I GTNNAC 2 cut(s) 288, 323
Hpy99I CGWCG 2 cut(s) 275, 379
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 2 cut(s) 254, 317
Hsp92II CATG 3 cut(s) 20, 160, 222
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 3 cut(s) 52, 84, 133
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 5 cut(s) 102, 298, 319, 343, 393
MaeI CTAG 3 cut(s) 12, 327, 418
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 54, 86, 135
MboI GATC 3 cut(s) 52, 84, 133
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 318, 328
MnlI CCTC 5 cut(s) 164, 187, 218, 259, 380
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 150, 366
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 47
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 3 cut(s) 52, 84, 133
NheI GCTAGC 1 cut(s) 11
NlaIII CATG 3 cut(s) 20, 160, 222
NlaIV GGNNCC 1 cut(s) 86
NsbI TGCGCA 1 cut(s) 356
NspV TTCGAA 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 348
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 2 cut(s) 317, 327
PpsI GAGTC 2 cut(s) 317, 327
PspFI CCCAGC 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 84
SaqAI TTAA 2 cut(s) 150, 366
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 52, 84, 133
SchI GAGTC 2 cut(s) 318, 328
SduI GDGCHC 1 cut(s) 236
SetI ASST 6 cut(s) 76, 156, 255, 328, 362, 391
SfuI TTCGAA 1 cut(s) 179
SsiI CCGC 3 cut(s) 92, 226, 229
SspMI CTAG 3 cut(s) 12, 327, 418
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 51, 179
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 150, 366
Tru9I TTAA 2 cut(s) 150, 366
TscAI CASTG 1 cut(s) 351
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 351
XspI CTAG 3 cut(s) 12, 327, 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.