Rh2DG244600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001119
Physical Location & Seq
Forward (+)
24968189 .. 24976218
8030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG244600.1

Sequence Viewer

Length: 453 bp
ATGGCTGGTGCCACAAATGGGATCGCAGCGTTGTCCTTTTCCAGCGTGTTTTATGTCAACATGGGGCGTGCCGATGGTCGTCTTTTTCTGCTTTTCCTTCTCCTTGTACTTGCTGGCTGCAGTGATGGAGGAAGCGTGATGGATCCGGATATGCTTTTTATTCCTGCTAGGAGGATCGATAGAGGTGCCATCGATCCTTGGAGGTGGAGGGGGTTCCGGCTCTCAGGTTCTCGTGTTGTCGACATTAGAGGCGTGAACGATAGCGTCAGTGCTTGGGTTGATTACTGGGCCGCAGGTGGGCATGGGACCGATGGTGGCTGGGACTATTGTTTGCTGAGAAAGCCAGATTGGGCTCAACACCACCGAGCTGCCACAACAAGTGCAACCAGTGCCACCCTTGCATGGCAGTCCAAGTCCCCACCATGCCCAGCCGCGACCGGGTCCGACCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.12

Weight (kDa)

7.77

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 284
Acc36I ACCTGC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 8, 185
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 2 cut(s) 291, 432
AclWI GGATC 5 cut(s) 29, 137, 150, 182, 188
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 4 cut(s) 18, 297, 402, 438
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
AlwI GGATC 5 cut(s) 29, 137, 150, 182, 188
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 3 cut(s) 26, 117, 368
AspS9I GGNCC 3 cut(s) 288, 306, 441
AsuC2I CCSGG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 306, 441
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 2 cut(s) 8, 185
BanII GRGCYC 1 cut(s) 355
BauI CACGAG 1 cut(s) 231
BbvI GCAGC 3 cut(s) 38, 104, 355
BccI CCATC 5 cut(s) 68, 119, 133, 197, 305
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcnI CCSGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 5 cut(s) 27, 118, 291, 369, 432
BlsI GCNGC 5 cut(s) 28, 119, 292, 370, 433
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 306, 441
BmgT120I GGNCC 3 cut(s) 288, 306, 441
BmiI GGNNCC 6 cut(s) 10, 144, 187, 215, 307, 442
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 439
Bsa29I ATCGAT 2 cut(s) 177, 192
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 297, 402, 438
Bse1I ACTGG 2 cut(s) 290, 387
BseAI TCCGGA 1 cut(s) 145
BseCI ATCGAT 2 cut(s) 177, 192
BseDI CCNNGG 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 18, 297, 402, 438
BseMII CTCAG 2 cut(s) 237, 326
BseNI ACTGG 2 cut(s) 290, 387
BseXI GCAGC 3 cut(s) 38, 104, 355
BseYI CCCAGC 2 cut(s) 318, 427
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 2 cut(s) 8, 185
BshVI ATCGAT 2 cut(s) 177, 192
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 3 cut(s) 146, 217, 438
BslFI GGGAC 3 cut(s) 319, 335, 400
BslI CCNNNNNNNGG 4 cut(s) 18, 297, 402, 438
BsmFI GGGAC 3 cut(s) 319, 335, 400
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 21, 142, 174, 193
BspACI CCGC 2 cut(s) 291, 432
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 236, 327
BspDI ATCGAT 2 cut(s) 177, 192
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 6 cut(s) 10, 144, 187, 215, 307, 442
BspMAI CTGCAG 1 cut(s) 122
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 5 cut(s) 29, 137, 150, 182, 188
BspT107I GGYRCC 2 cut(s) 8, 185
BsrI ACTGG 2 cut(s) 290, 387
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 4 cut(s) 21, 142, 174, 193
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 69, 115
BstDEI CTNAG 2 cut(s) 223, 335
BstFNI CGCG 1 cut(s) 434
BstKTI GATC 4 cut(s) 24, 145, 177, 196
BstMBI GATC 4 cut(s) 21, 142, 174, 193
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 3 cut(s) 340, 389, 398
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 38, 104, 355
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
Bsu15I ATCGAT 2 cut(s) 177, 192
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 2 cut(s) 177, 192
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 3 cut(s) 127, 274, 394
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 69, 115
Cfr13I GGNCC 3 cut(s) 288, 306, 441
ClaI ATCGAT 2 cut(s) 177, 192
CseI GACGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 107
CviAII CATG 4 cut(s) 61, 302, 402, 423
CviJI RGCY 9 cut(s) 5, 117, 220, 290, 318, 343, 353, 368, 431
CviKI_1 RGCY 9 cut(s) 5, 117, 220, 290, 318, 343, 353, 368, 431
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 223, 335
DpnI GATC 4 cut(s) 23, 144, 176, 195
DpnII GATC 4 cut(s) 21, 142, 174, 193
Eco130I CCWWGG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 306, 441
EcoT14I CCWWGG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 4 cut(s) 64, 305, 405, 426
FaiI YATR 6 cut(s) 54, 62, 152, 303, 403, 424
FaqI GGGAC 3 cut(s) 319, 335, 400
FatI CATG 4 cut(s) 60, 301, 401, 422
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 5 cut(s) 27, 118, 291, 369, 432
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 5 cut(s) 27, 118, 291, 369, 432
FspBI CTAG 1 cut(s) 168
GluI GCNGC 5 cut(s) 27, 118, 291, 369, 432
GsaI CCCAGC 2 cut(s) 322, 431
HaeIII GGCC 1 cut(s) 290
HapII CCGG 3 cut(s) 146, 217, 438
HgaI GACGC 1 cut(s) 253
Hin1II CATG 4 cut(s) 64, 305, 405, 426
HincII GTYRAC 2 cut(s) 58, 241
HindII GTYRAC 2 cut(s) 58, 241
HpaII CCGG 3 cut(s) 146, 217, 438
Hpy166II GTNNAC 3 cut(s) 58, 241, 256
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 3 cut(s) 58, 241, 256
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 120, 383, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 340, 389, 398
HpyF3I CTNAG 2 cut(s) 223, 335
Hsp92II CATG 4 cut(s) 64, 305, 405, 426
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 21, 142, 174, 193
Lsp1109I GCAGC 3 cut(s) 38, 104, 355
MaeI CTAG 1 cut(s) 168
MalI GATC 4 cut(s) 23, 144, 176, 195
MboI GATC 4 cut(s) 21, 142, 174, 193
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 355
MnlI CCTC 6 cut(s) 122, 165, 176, 195, 201, 242
MroI TCCGGA 1 cut(s) 145
MspI CCGG 3 cut(s) 146, 217, 438
MspR9I CCNGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 3 cut(s) 340, 389, 398
NciI CCSGG 1 cut(s) 439
NdeII GATC 4 cut(s) 21, 142, 174, 193
NlaIII CATG 4 cut(s) 64, 305, 405, 426
NlaIV GGNNCC 6 cut(s) 10, 144, 187, 215, 307, 442
PaqCI CACCTGC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 439
PkrI GCNGC 5 cut(s) 28, 119, 292, 370, 433
PspFI CCCAGC 2 cut(s) 318, 427
PspN4I GGNNCC 6 cut(s) 10, 144, 187, 215, 307, 442
PspPI GGNCC 3 cut(s) 288, 306, 441
PstI CTGCAG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 142
PsyI GACNNNGTC 1 cut(s) 439
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 5 cut(s) 27, 118, 291, 369, 432
Sau3AI GATC 4 cut(s) 21, 142, 174, 193
Sau96I GGNCC 3 cut(s) 288, 306, 441
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 355
SetI ASST 5 cut(s) 187, 206, 229, 298, 370
SfcI CTRYAG 1 cut(s) 118
SinI GGWCC 2 cut(s) 306, 441
SsiI CCGC 2 cut(s) 291, 432
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 197
TaqI TCGA 3 cut(s) 177, 192, 240
TaqII GACCGA 1 cut(s) 323
TatI WGTACW 1 cut(s) 106
TauI GCSGC 2 cut(s) 293, 434
TscAI CASTG 3 cut(s) 127, 274, 394
TseI GCWGC 3 cut(s) 26, 117, 368
TspRI CASTG 3 cut(s) 127, 274, 394
Tth111I GACNNNGTC 1 cut(s) 439
VpaK11BI GGWCC 2 cut(s) 306, 441
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.