Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

9246976 .. 9253879

Gene Structure 6904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031893

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTTGTTTTTTCACCATGTGCTACGTCGAGGATCGGAGCCGAGACGGCTCAAGTTTTAGCCAAGCACGGTGCCAAACTGGTCCTCCCTGCTCGGAGCCTCAAAGCCGCCAAAGACGCCAAGGCGCGAGTTCGAAAAGCAGAAAAGCAATGGGGATTCTGGAAATCAGGGACCGGTGCTGGAATCTCAATTTCAGAATCGAAGGACGGCGGCGTCAGCTACACGCTTAATTTGGAGGACGACTCCACACGCGTCGACGACATCCTCCTCGAGTCGCTGCTGCCGGCCTTCGTCTCCTGGAGTCTAACCCCGCCAGAGAAGTCGACCACAAGCCAGCATATTCTGGACGACATTCAAGAGGAAGATGAGGAAACTCCGGAGGGTTTATTCTCCCGGGTAGATGCAGGCGGGGGTGAGGTTGTCGTCAGCGATGGATGTAGCAAGATGTCTGGAGGCGGCGATGCAATGGAGGAGGCTGCTGGGGTTTTTCCCCATTGGGCTTCCAGCTGGGCTGTTCTGGATGTGGGCTTCTCTGTGGGCTTTATGATTGGGTTGCTTTGGGCCCAAAAGGCCTTTAGGGCTGCCGTGTCCTCCTGCTGGGCTGATTGTTGTTGGGCTCCTTGTTTTGGGGTCTTCGAGGTTGGGCTTCACAGAGGTGGAGGTGACTGTGGGCTGGTATTTGTCGGTCTGATAGGTGGGGCTATATGGGATTCCAACTGGACTGTGGGTTGCTTTTGGTTGGAATGGGGCTCTAGGGCCTCTAGTACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

258

Amino Acids

27.3

Weight (kDa)

4.81

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	255, 323
AccII	CGCG	2 cut(s)	127, 252
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	5 cut(s)	108, 210, 311, 408, 456
AclWI	GGATC	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	117, 213
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	597, 626
AflIII	ACRYGT	1 cut(s)	250
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	296
AleI	CACNNNNGTG	1 cut(s)	654
AluBI	AGCT	2 cut(s)	219, 507
AluI	AGCT	2 cut(s)	219, 507
Alw26I	GTCTC	2 cut(s)	38, 298
AlwI	GGATC	1 cut(s)	41
Ama87I	CYCGRG	2 cut(s)	269, 393
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	4 cut(s)	285, 561, 570, 756
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	4 cut(s)	277, 280, 476, 581
AsiGI	ACCGGT	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	5 cut(s)	82, 171, 561, 562, 756
AsuC2I	CCSGG	2 cut(s)	394, 395
AsuHPI	GGTGA	3 cut(s)	6, 425, 674
AsuII	TTCGAA	1 cut(s)	133
AvaI	CYCGRG	2 cut(s)	269, 393
AvaII	GGWCC	2 cut(s)	82, 171
BaeGI	GKGCMC	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	3 cut(s)	565, 619, 752
BbsI	GAAGAC	1 cut(s)	625
BbvI	GCAGC	4 cut(s)	264, 267, 463, 568
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	3 cut(s)	63, 223, 569
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	394, 395
BcoDI	GTCTC	2 cut(s)	38, 298
BfaI	CTAG	2 cut(s)	753, 762
BglI	GCCNNNNNGGC	3 cut(s)	47, 569, 578
BisI	GCNGC	7 cut(s)	108, 211, 278, 281, 457, 477, 582
BlsI	GCNGC	7 cut(s)	109, 212, 279, 282, 458, 478, 583
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	3 cut(s)	298, 394, 395
Bme18I	GGWCC	2 cut(s)	82, 171
BmeT110I	CYCGRG	2 cut(s)	269, 393
BmgT120I	GGNCC	5 cut(s)	82, 171, 561, 562, 756
BmiI	GGNNCC	6 cut(s)	40, 73, 98, 172, 563, 618
BmrFI	CCNGG	3 cut(s)	298, 394, 395
BmsI	GCATC	2 cut(s)	391, 451
BpiI	GAAGAC	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	2 cut(s)	319, 471
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	2 cut(s)	394, 395
BsaHI	GRCGYC	2 cut(s)	117, 213
BsaJI	CCNNGG	2 cut(s)	120, 393
BsaWI	WCCGGW	2 cut(s)	173, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	2 cut(s)	597, 626
Bse118I	RCCGGY	2 cut(s)	173, 283
Bse1I	ACTGG	2 cut(s)	84, 722
Bse3DI	GCAATG	2 cut(s)	155, 471
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	120, 393
BseGI	GGATG	3 cut(s)	261, 440, 526
BseLI	CCNNNNNNNGG	2 cut(s)	597, 626
BseMI	GCAATG	2 cut(s)	155, 471
BseNI	ACTGG	2 cut(s)	84, 722
BseRI	GAGGAG	2 cut(s)	257, 485
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	4 cut(s)	264, 267, 463, 568
BseYI	CCCAGC	3 cut(s)	479, 507, 597
Bsh1236I	CGCG	2 cut(s)	127, 252
BshFI	GGCC	4 cut(s)	287, 563, 572, 758
BshNI	GGYRCC	1 cut(s)	71
BshTI	ACCGGT	1 cut(s)	173
BsiHKCI	CYCGRG	2 cut(s)	269, 393
BsiSI	CCGG	4 cut(s)	174, 284, 377, 394
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	597, 626
BsmAI	GTCTC	2 cut(s)	38, 298
BsmBI	CGTCTC	2 cut(s)	38, 298
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	4 cut(s)	287, 563, 572, 758
BsoBI	CYCGRG	2 cut(s)	269, 393
Bsp119I	TTCGAA	1 cut(s)	133
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	3 cut(s)	565, 619, 752
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	5 cut(s)	108, 210, 311, 408, 456
BspANI	GGCC	4 cut(s)	287, 563, 572, 758
BspEI	TCCGGA	1 cut(s)	376
BspFNI	CGCG	2 cut(s)	127, 252
BspLI	GGNNCC	6 cut(s)	40, 73, 98, 172, 563, 618
BspPI	GGATC	1 cut(s)	41
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	155, 471
BsrFI	RCCGGY	2 cut(s)	173, 283
BsrI	ACTGG	2 cut(s)	84, 722
BssAI	RCCGGY	2 cut(s)	173, 283
BssECI	CCNNGG	2 cut(s)	120, 393
BssMI	GATC	1 cut(s)	33
BssNI	GRCGYC	2 cut(s)	117, 213
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	71, 668, 724
BstACI	GRCGYC	2 cut(s)	117, 213
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	285, 335, 406
BstF5I	GGATG	3 cut(s)	261, 440, 526
BstFNI	CGCG	2 cut(s)	127, 252
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	38, 298
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 116, 216, 569, 578
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	296, 392, 393
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	2 cut(s)	127, 252
BstV1I	GCAGC	4 cut(s)	264, 267, 463, 568
BstV2I	GAAGAC	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	287, 563, 572, 758
BtgZI	GCGATG	2 cut(s)	444, 474
BtsCI	GGATG	3 cut(s)	261, 440, 526
Cac8I	GCNNGC	3 cut(s)	285, 335, 406
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	2 cut(s)	173, 283
Cfr13I	GGNCC	5 cut(s)	82, 171, 561, 562, 756
Cfr9I	CCCGGG	1 cut(s)	393
CseI	GACGC	3 cut(s)	125, 202, 241
Csp6I	GTAC	1 cut(s)	765
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	1 cut(s)	765
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraIII	CACNNNGTG	1 cut(s)	20
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	572
Eco24I	GRGCYC	3 cut(s)	565, 619, 752
Eco47I	GGWCC	2 cut(s)	82, 171
Eco88I	CYCGRG	2 cut(s)	269, 393
EcoO109I	RGGNCCY	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	3 cut(s)	565, 619, 752
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	2 cut(s)	38, 298
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 339, 545, 704, 706
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	1 cut(s)	17
FauI	CCCGC	2 cut(s)	318, 401
FblI	GTMKAC	2 cut(s)	255, 323
Fnu4HI	GCNGC	7 cut(s)	108, 211, 278, 281, 457, 477, 582
FokI	GGATG	3 cut(s)	248, 447, 533
FriOI	GRGCYC	3 cut(s)	565, 619, 752
Fsp4HI	GCNGC	7 cut(s)	108, 211, 278, 281, 457, 477, 582
FspBI	CTAG	2 cut(s)	753, 762
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	7 cut(s)	108, 211, 278, 281, 457, 477, 582
GsaI	CCCAGC	3 cut(s)	483, 511, 601
GsuI	CTGGAG	2 cut(s)	319, 471
HaeIII	GGCC	4 cut(s)	287, 563, 572, 758
HapII	CCGG	4 cut(s)	174, 284, 377, 394
HgaI	GACGC	3 cut(s)	125, 202, 241
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	2 cut(s)	117, 213
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	2 cut(s)	256, 324
HindII	GTYRAC	2 cut(s)	256, 324
HinfI	GANTC	7 cut(s)	156, 183, 197, 242, 272, 301, 710
HpaII	CCGG	4 cut(s)	174, 284, 377, 394
HphI	GGTGA	3 cut(s)	6, 425, 674
Hpy166II	GTNNAC	2 cut(s)	256, 324
Hpy188I	TCNGA	4 cut(s)	38, 96, 196, 690
Hpy188III	TCNNGA	6 cut(s)	160, 344, 356, 377, 450, 518
Hpy8I	GTNNAC	2 cut(s)	256, 324
Hpy99I	CGWCG	3 cut(s)	31, 257, 260
HpyAV	CCTTC	2 cut(s)	196, 298
HpyCH4III	ACNGT	3 cut(s)	71, 668, 724
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	404, 464
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 116, 216, 569, 578
HpySE526I	ACGT	1 cut(s)	26
Hsp92I	GRCGYC	2 cut(s)	117, 213
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	376
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	38, 96, 622
Lsp1109I	GCAGC	4 cut(s)	264, 267, 463, 568
LweI	GCATC	2 cut(s)	391, 451
MaeI	CTAG	2 cut(s)	753, 762
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	2 cut(s)	374, 625
MhlI	GDGCHC	3 cut(s)	565, 619, 752
MluCI	AATT	2 cut(s)	189, 229
MluI	ACGCGT	1 cut(s)	250
MlyI	GAGTC	3 cut(s)	236, 281, 310
MmeI	TCCRAC	2 cut(s)	720, 738
MroI	TCCGGA	1 cut(s)	376
MroNI	GCCGGC	1 cut(s)	283
MseI	TTAA	2 cut(s)	228, 772
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	4 cut(s)	174, 284, 377, 394
MspR9I	CCNGG	3 cut(s)	298, 394, 395
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	2 cut(s)	127, 252
MwoI	GCNNNNNNNGC	5 cut(s)	47, 116, 216, 569, 578
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	394, 395
NdeII	GATC	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	6 cut(s)	40, 73, 98, 172, 563, 618
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	269
PceI	AGGCCT	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	156, 183, 197, 710
PfoI	TCCNGGA	1 cut(s)	296
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	7 cut(s)	109, 212, 279, 282, 458, 478, 583
PleI	GAGTC	3 cut(s)	236, 280, 309
PpsI	GAGTC	3 cut(s)	236, 280, 309
Psp6I	CCWGG	1 cut(s)	296
PspFI	CCCAGC	3 cut(s)	479, 507, 597
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	6 cut(s)	40, 73, 98, 172, 563, 618
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	5 cut(s)	82, 171, 561, 562, 756
PspXI	VCTCGAGB	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	507
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	654
SalI	GTCGAC	2 cut(s)	254, 322
SaqAI	TTAA	2 cut(s)	228, 772
SatI	GCNGC	7 cut(s)	108, 211, 278, 281, 457, 477, 582
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	5 cut(s)	82, 171, 561, 562, 756
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	3 cut(s)	236, 281, 310
ScrFI	CCNGG	3 cut(s)	298, 394, 395
SduI	GDGCHC	3 cut(s)	565, 619, 752
SetI	ASST	8 cut(s)	29, 221, 420, 509, 642, 658, 664, 697
SfaNI	GCATC	2 cut(s)	391, 451
SfiI	GGCCNNNNNGGCC	1 cut(s)	569
Sfr274I	CTCGAG	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	133
SgrDI	CGTCGACG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	82, 171
SlaI	CTCGAG	1 cut(s)	269
SmaI	CCCGGG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	2 cut(s)	51, 269
SmoI	CTYRAG	2 cut(s)	51, 269
Sse9I	AATT	2 cut(s)	189, 229
SseBI	AGGCCT	1 cut(s)	572
SsiI	CCGC	5 cut(s)	108, 210, 311, 408, 456
SspMI	CTAG	2 cut(s)	753, 762
StuI	AGGCCT	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	296, 392, 393
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	71, 668, 724
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	7 cut(s)	29, 133, 200, 255, 270, 323, 636
TaqII	GACCGA	1 cut(s)	674
TasI	AATT	2 cut(s)	189, 229
TatI	WGTACW	1 cut(s)	764
TauI	GCSGC	3 cut(s)	110, 213, 459
TfiI	GAWTC	4 cut(s)	156, 183, 197, 710
Tru1I	TTAA	2 cut(s)	228, 772
Tru9I	TTAA	2 cut(s)	228, 772
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	4 cut(s)	277, 280, 476, 581
Tsp45I	GTSAC	1 cut(s)	662
TspMI	CCCGGG	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	82, 171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	393
XmiI	GTMKAC	2 cut(s)	255, 323
XspI	CTAG	2 cut(s)	753, 762
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.