Rh1CG144900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001119
Physical Location & Seq
Forward (+)
31298421 .. 31310986
12566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG144900.1

Sequence Viewer

Length: 390 bp
ATGTGGTCCCAACGTATGTTCGCCGTCCGGCCATCGCACTGGTTTTTTTTCTCTTCGTCCTGCCGTCGCGGTCATTCTATTGGCCTTGGTTTAATCGTTAGTCGACCTCAGAGAGAGAGAATCGAAGGTCAAATATTGAATAGGGAATTGAATTTGAATTCTTGCATCGCTAACGGTTGCCCCATTGAATCAGCTGTGTTTCGTACTGAAGTGCAGCATGAAGAAATTTTGCATTTGAGGGACATTCCCAGAACTTTGTTGTTCATCCACTTGGAGAACGTTGGAAGAGGCATGATGGATCCGGATATGCTTTTCGTTCCTGCTGGGAGGATTGACGGAGGTGCCATTGATAGCTTGGAGGTGGAGAGGGTTCCGGCTATCAGGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

6.96

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccI GTMKAC 1 cut(s) 103
AccII CGCG 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 1 cut(s) 69
AclI AACGTT 1 cut(s) 279
AclWI GGATC 2 cut(s) 293, 306
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 3 cut(s) 151, 157, 225
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 4 cut(s) 139, 151, 157, 188
AluBI AGCT 2 cut(s) 194, 354
AluI AGCT 2 cut(s) 194, 354
AlwI GGATC 2 cut(s) 293, 306
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 3 cut(s) 29, 82, 384
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 3 cut(s) 151, 157, 225
AspS9I GGNCC 2 cut(s) 6, 384
AvaII GGWCC 1 cut(s) 6
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 40, 289
BceAI ACGGC 2 cut(s) 8, 48
BfaI CTAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 6, 384
BmiI GGNNCC 4 cut(s) 8, 300, 343, 372
BmsI GCATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 31, 84, 386
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 3 cut(s) 28, 302, 374
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 31, 84, 386
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 1 cut(s) 69
BspANI GGCC 3 cut(s) 31, 84, 386
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 4 cut(s) 8, 300, 343, 372
BspPI GGATC 2 cut(s) 293, 306
BspT107I GGYRCC 1 cut(s) 341
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 58, 280
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 298
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 3 cut(s) 31, 84, 386
BtgZI GCGATG 2 cut(s) 18, 151
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 6, 384
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 218, 292
CviJI RGCY 6 cut(s) 31, 84, 194, 354, 377, 386
CviKI_1 RGCY 6 cut(s) 31, 84, 194, 354, 377, 386
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 58, 280
EarI CTCTTC 2 cut(s) 58, 280
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 2 cut(s) 221, 295
FaiI YATR 4 cut(s) 17, 219, 293, 308
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 217, 291
FblI GTMKAC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 388
GluI GCNGC 1 cut(s) 215
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 3 cut(s) 31, 84, 386
HapII CCGG 3 cut(s) 28, 302, 374
Hin1II CATG 2 cut(s) 221, 295
HincII GTYRAC 1 cut(s) 104
HindII GTYRAC 1 cut(s) 104
HinfI GANTC 2 cut(s) 120, 188
HpaII CCGG 3 cut(s) 28, 302, 374
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 2 cut(s) 13, 279
HpyCH4V TGCA 3 cut(s) 165, 214, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 2 cut(s) 13, 279
Hsp92II CATG 2 cut(s) 221, 295
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 1 cut(s) 298
LpnPI CCDG 8 cut(s) 25, 41, 73, 262, 309, 315, 333, 367
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 388
MaeII ACGT 2 cut(s) 13, 279
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 45, 233, 297
MflI RGATCY 1 cut(s) 298
MluCI AATT 4 cut(s) 146, 151, 157, 225
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 7 cut(s) 117, 231, 281, 321, 332, 352, 360
MroI TCCGGA 1 cut(s) 301
MseI TTAA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 3 cut(s) 28, 302, 374
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 383
NdeII GATC 1 cut(s) 298
NlaIII CATG 2 cut(s) 221, 295
NlaIV GGNNCC 4 cut(s) 8, 300, 343, 372
PfeI GAWTC 2 cut(s) 120, 188
PkrI GCNGC 1 cut(s) 216
Psp1406I AACGTT 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 323
PspN4I GGNNCC 4 cut(s) 8, 300, 343, 372
PspPI GGNCC 2 cut(s) 6, 384
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SalI GTCGAC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 6, 384
SetI ASST 8 cut(s) 16, 109, 130, 196, 282, 343, 356, 363
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 1 cut(s) 6
Sse9I AATT 4 cut(s) 146, 151, 157, 225
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 2 cut(s) 16, 282
TaqI TCGA 2 cut(s) 103, 123
TasI AATT 4 cut(s) 146, 151, 157, 225
TfiI GAWTC 2 cut(s) 120, 188
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 44
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 234, 253
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 3 cut(s) 151, 157, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.