RLG00000007990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001119
Physical Location & Seq
Reverse (-)
23991785 .. 23992753
969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007990

Sequence Viewer

Length: 336 bp
ATGGAAGCCAAGTATCAAGGTGTTTTGGTGGCTGATCTGAGGCCGAGTTCTAACCGCATGGATTTGAGTGGGTCTGCTTTGGATCGATGCAACTTGGTCACGGGTCAAGGTCATTTAACTGGCTACATTAGTGGGGGTATCACAGTCATTGTTGATGGTGTTTGCAGGCGGAAGGTTTTCTGGGCCTCTGCTGTTCGTATAGAGTGTGTTTTTGAAGATGGCGGCAGTGATCCGGTGAAGGTGGAGGACGACGATCTAGCTCGGTGTACTTTCATTGGCAATGTCGAAGTCTGGCTGAGTCGACTTGGTTTGGCCTGGCATATTAGGCCGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.15

Weight (kDa)

5.58

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AciI CCGC 3 cut(s) 55, 169, 222
AclWI GGATC 2 cut(s) 90, 224
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
AlwI GGATC 2 cut(s) 90, 224
AoxI GGCC 4 cut(s) 41, 183, 312, 326
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 247
BccI CCATC 2 cut(s) 149, 212
BciT130I CCWGG 1 cut(s) 316
BfaI CTAG 2 cut(s) 257, 334
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 232
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 316
BseCI ATCGAT 1 cut(s) 85
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 29, 287
BseNI ACTGG 1 cut(s) 124
BshFI GGCC 4 cut(s) 43, 185, 314, 328
BshVI ATCGAT 1 cut(s) 85
BsiSI CCGG 1 cut(s) 233
BsnI GGCC 4 cut(s) 43, 185, 314, 328
Bsp143I GATC 4 cut(s) 34, 82, 229, 253
BspACI CCGC 3 cut(s) 55, 169, 222
BspANI GGCC 4 cut(s) 43, 185, 314, 328
BspCNI CTCAG 2 cut(s) 30, 288
BspDI ATCGAT 1 cut(s) 85
BspPI GGATC 2 cut(s) 90, 224
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 124
BssMI GATC 4 cut(s) 34, 82, 229, 253
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 38, 296
BstKTI GATC 4 cut(s) 37, 85, 232, 256
BstMBI GATC 4 cut(s) 34, 82, 229, 253
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
Bsu15I ATCGAT 1 cut(s) 85
BsuRI GGCC 4 cut(s) 43, 185, 314, 328
BsuTUI ATCGAT 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 85
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 58
CviJI RGCY 9 cut(s) 8, 32, 43, 123, 185, 260, 295, 314, 328
CviKI_1 RGCY 9 cut(s) 8, 32, 43, 123, 185, 260, 295, 314, 328
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 38, 296
DpnI GATC 4 cut(s) 36, 84, 231, 255
DpnII GATC 4 cut(s) 34, 82, 229, 253
EciI GGCGGA 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 314
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 200, 321
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 2 cut(s) 257, 334
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 4 cut(s) 43, 185, 314, 328
HapII CCGG 1 cut(s) 233
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 1 cut(s) 298
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 267, 302
Hpy188I TCNGA 1 cut(s) 39
Hpy8I GTNNAC 2 cut(s) 267, 302
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 166, 232
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 90, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 38, 296
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 4 cut(s) 34, 82, 229, 253
LpnPI CCDG 7 cut(s) 105, 151, 166, 246, 277, 301, 328
LweI GCATC 1 cut(s) 77
MaeI CTAG 2 cut(s) 257, 334
MaeIII GTNAC 1 cut(s) 97
MalI GATC 4 cut(s) 36, 84, 231, 255
MboI GATC 4 cut(s) 34, 82, 229, 253
MboII GAAGA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 3 cut(s) 33, 196, 238
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 1 cut(s) 116
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 4 cut(s) 34, 82, 229, 253
NlaIII CATG 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 4 cut(s) 34, 82, 229, 253
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 316
SetI ASST 5 cut(s) 22, 112, 177, 243, 262
SfaNI GCATC 1 cut(s) 77
SsiI CCGC 3 cut(s) 55, 169, 222
SspMI CTAG 2 cut(s) 257, 334
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 3 cut(s) 85, 285, 301
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 262
TspRI CASTG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 2 cut(s) 257, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.