Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Reverse (-)

62377566 .. 62378258

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035178

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCATTGCTAGCCTGGTGGCTAATCGGTTCTTTCTTCTTGTTGCGTTTGTTCTGTCGCTTGGAGTGACGCCCTGGATTGGGATACCTGTGGTGGTTGTCTGGGACGGCAGTTCTGATGTTTTGGTGGTGGATCTGAGGCCAGACGGTGGTGGGGGCTGCATCAACGTTGTTAATGGTACTTGGGAACAGAAGGATATACACGCCTCCTCTGATTTTGGTGGTTTGATTGGCGGCTTTGGTTTTGACTGTATTAGATGTGATGGGGATTCTGCAACCACTGGTTTTGTTCCCGTCCCTCTGCTCTGGGGTTGGCTTGAGCATGGTGGCGATCGATTTGTTTCGGGGCAGTTGGAGATGAGGACCGATCTGATTACTTTGGGCCCAGATCCTCTGATGTTAGGCGGTGGTTTACGGGTTTGGTTTTTGGACTCAGGAATGTCTTGGTATGGTGGTAAGAGGTCATTCTCCAGGATAGACACTGGCGGAGGAGAGGTAACTGTTGGCGGTGGAGACAGTTGCGGCGGCTGTGTATGGGATGGTGACGTTGGTGGACTGGAACAGGGCAGGGTGCCCTTAGTGATCTTCGTTTGGGCCATCTGGTCCTTGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

21.55

Weight (kDa)

4.31

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	149
AciI	CCGC	6 cut(s)	234, 405, 486, 507, 522, 525
AclI	AACGTT	1 cut(s)	168
AclWI	GGATC	2 cut(s)	141, 383
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	80, 81, 149
AjnI	CCWGG	3 cut(s)	15, 74, 470
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	2 cut(s)	141, 383
AoxI	GGCC	4 cut(s)	3, 140, 382, 594
ApaI	GGGCCC	1 cut(s)	386
ApeKI	GCWGC	1 cut(s)	159
AspS9I	GGNCC	5 cut(s)	363, 382, 383, 594, 603
AsuHPI	GGTGA	1 cut(s)	554
AsuNHI	GCTAGC	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	363, 603
BaeGI	GKGCMC	2 cut(s)	386, 576
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	3 cut(s)	257, 533, 605
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	3 cut(s)	17, 76, 472
BciVI	GTATCC	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	2 cut(s)	12, 613
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	160, 235, 523, 526
BlsI	GCNGC	4 cut(s)	161, 236, 524, 527
Bme1390I	CCNGG	3 cut(s)	17, 76, 472
Bme18I	GGWCC	2 cut(s)	363, 603
BmgT120I	GGNCC	5 cut(s)	363, 382, 383, 594, 603
BmiI	GGNNCC	2 cut(s)	384, 573
BmrFI	CCNGG	3 cut(s)	17, 76, 472
BmsI	GCATC	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 81, 149
Bse1I	ACTGG	3 cut(s)	286, 487, 561
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	3 cut(s)	17, 76, 472
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	3 cut(s)	80, 81, 149
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	2 cut(s)	128, 447
BseNI	ACTGG	3 cut(s)	286, 487, 561
BseRI	GAGGAG	2 cut(s)	199, 504
BseSI	GKGCMC	2 cut(s)	386, 576
BseXI	GCAGC	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	334
BshFI	GGCC	4 cut(s)	5, 142, 384, 596
BshNI	GGYRCC	1 cut(s)	571
BshVI	ATCGAT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	334
BslFI	GGGAC	2 cut(s)	119, 281
BslI	CCNNNNNNNGG	3 cut(s)	80, 81, 149
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	119, 281
BsnI	GGCC	4 cut(s)	5, 142, 384, 596
Bsp120I	GGGCCC	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	386, 576
Bsp143I	GATC	5 cut(s)	133, 331, 367, 388, 582
BspACI	CCGC	6 cut(s)	234, 405, 486, 507, 522, 525
BspANI	GGCC	4 cut(s)	5, 142, 384, 596
BspCNI	CTCAG	2 cut(s)	129, 446
BspDI	ATCGAT	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	384, 573
BspOI	GCTAGC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	141, 383
BspT107I	GGYRCC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	3 cut(s)	286, 487, 561
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	5 cut(s)	133, 331, 367, 388, 582
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	17, 76, 472
Bst4CI	ACNGT	4 cut(s)	149, 251, 502, 518
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	3 cut(s)	137, 433, 577
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	5 cut(s)	136, 334, 370, 391, 585
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	5 cut(s)	133, 331, 367, 388, 582
BstMCI	CGRYCG	1 cut(s)	334
BstNI	CCWGG	3 cut(s)	17, 76, 472
BstSCI	CCNGG	3 cut(s)	15, 74, 470
BstSLI	GKGCMC	2 cut(s)	386, 576
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	133, 388
BstYI	RGATCY	2 cut(s)	133, 388
Bsu15I	ATCGAT	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	5, 142, 384, 596
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	279, 480
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	5 cut(s)	363, 382, 383, 594, 603
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	180
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	3 cut(s)	137, 433, 577
DpnI	GATC	5 cut(s)	135, 333, 369, 390, 584
DpnII	GATC	5 cut(s)	133, 331, 367, 388, 582
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	363, 603
EcoRII	CCWGG	3 cut(s)	15, 74, 470
EcoT38I	GRGCYC	1 cut(s)	386
FaeI	CATG	1 cut(s)	326
FaiI	YATR	4 cut(s)	200, 324, 450, 535
FaqI	GGGAC	2 cut(s)	119, 281
FatI	CATG	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	160, 235, 523, 526
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	4 cut(s)	160, 235, 523, 526
FspBI	CTAG	2 cut(s)	12, 613
GluI	GCNGC	4 cut(s)	160, 235, 523, 526
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	4 cut(s)	5, 142, 384, 596
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	326
HinfI	GANTC	2 cut(s)	269, 431
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	2 cut(s)	413, 554
Hpy188I	TCNGA	5 cut(s)	118, 138, 214, 372, 396
Hpy188III	TCNNGA	1 cut(s)	435
Hpy8I	GTNNAC	2 cut(s)	413, 554
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	4 cut(s)	149, 251, 502, 518
HpyCH4IV	ACGT	2 cut(s)	168, 546
HpyCH4V	TGCA	2 cut(s)	162, 275
HpyF3I	CTNAG	3 cut(s)	137, 433, 577
HpySE526I	ACGT	2 cut(s)	168, 546
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	326
Kzo9I	GATC	5 cut(s)	133, 331, 367, 388, 582
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	12, 613
MaeII	ACGT	2 cut(s)	168, 546
MaeIII	GTNAC	3 cut(s)	67, 496, 542
MalI	GATC	5 cut(s)	135, 333, 369, 390, 584
MboI	GATC	5 cut(s)	133, 331, 367, 388, 582
MboII	GAAGA	2 cut(s)	29, 577
MflI	RGATCY	2 cut(s)	133, 388
MhlI	GDGCHC	2 cut(s)	386, 576
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	9 cut(s)	132, 217, 220, 309, 354, 402, 453, 482, 487
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	3 cut(s)	17, 76, 472
MvaI	CCWGG	3 cut(s)	17, 76, 472
NdeII	GATC	5 cut(s)	133, 331, 367, 388, 582
NheI	GCTAGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	384, 573
NmuCI	GTSAC	2 cut(s)	67, 542
PfeI	GAWTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	161, 236, 524, 527
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	15, 74, 470
PspGI	CCWGG	3 cut(s)	15, 74, 470
PspN4I	GGNNCC	2 cut(s)	384, 573
PspOMI	GGGCCC	1 cut(s)	382
PspPI	GGNCC	5 cut(s)	363, 382, 383, 594, 603
PsuI	RGATCY	2 cut(s)	133, 388
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	160, 235, 523, 526
Sau3AI	GATC	5 cut(s)	133, 331, 367, 388, 582
Sau96I	GGNCC	5 cut(s)	363, 382, 383, 594, 603
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	3 cut(s)	17, 76, 472
SduI	GDGCHC	2 cut(s)	386, 576
SetI	ASST	5 cut(s)	91, 171, 464, 498, 549
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	2 cut(s)	363, 603
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SsiI	CCGC	6 cut(s)	234, 405, 486, 507, 522, 525
SspMI	CTAG	2 cut(s)	12, 613
StyD4I	CCNGG	3 cut(s)	15, 74, 470
TaaI	ACNGT	4 cut(s)	149, 251, 502, 518
TaiI	ACGT	2 cut(s)	171, 549
TaqI	TCGA	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	380
TauI	GCSGC	3 cut(s)	237, 525, 528
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	286, 487
TseFI	GTSAC	2 cut(s)	67, 542
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	2 cut(s)	67, 542
TspRI	CASTG	2 cut(s)	286, 487
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	363, 603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	12, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.