RLG00000024977

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001119
Physical Location & Seq
Forward (+)
41003404 .. 41004032
629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024977

Sequence Viewer

Length: 405 bp
ATGGCCATGGCCATTGCTAGCCTTGTGGTTGCTTGTTTATTGCTTCTTATTGCTTTCGTACTGTTGCTCGACATGGTCGTCATTGATTTGGATGATAGGTGTTTGGGATTCGAGCCAGATTCTGCTATTTCTGGATCGAAGGACATGGTGTTTTGCCTTGTTAGCACTGATGTTGGATGTGGGGGTACGCTGCTTTGTTGCAGAGTTGCCGGGTTTAGGTTGGCCTGGCTGGATCAGGTGACTGATCTAGGCTTGGTTGATGTGCTGGTGGCGTCGTCCTTTAGTGGCGGCCAGATCGAGGTGTTCTGGTTCCTGGTAGCTGGTGGAGTAGGTCGCGTTGGCAATGGCGGTGAACTCTTTGCTGGTGACTGGACGGAGGCTGTGGACGATGGCGGCTGGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.0

Weight (kDa)

4.05

Isoelectric Point (pI)

24.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccII CGCG 1 cut(s) 336
AciI CCGC 3 cut(s) 288, 348, 393
AclWI GGATC 2 cut(s) 142, 240
AcoI YGGCCR 3 cut(s) 3, 9, 289
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 2 cut(s) 60, 187
AfiI CCNNNNNNNGG 2 cut(s) 216, 298
AjnI CCWGG 2 cut(s) 224, 312
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AlwI GGATC 2 cut(s) 142, 240
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 4 cut(s) 3, 9, 222, 289
ApeKI GCWGC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 250, 362, 377
AsuNHI GCTAGC 1 cut(s) 17
BalI TGGCCA 2 cut(s) 5, 11
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 226, 314
BcnI CCSGG 1 cut(s) 211
BfaI CTAG 2 cut(s) 18, 248
BisI GCNGC 3 cut(s) 191, 289, 394
BlsI GCNGC 3 cut(s) 192, 290, 395
Bme1390I CCNGG 3 cut(s) 211, 226, 314
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 3 cut(s) 211, 226, 314
BmtI GCTAGC 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 298
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 12, 349
BseBI CCWGG 2 cut(s) 226, 314
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 97, 182
BseLI CCNNNNNNNGG 2 cut(s) 216, 298
BseMI GCAATG 2 cut(s) 12, 349
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 4 cut(s) 5, 11, 224, 291
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 216, 298
BsnI GGCC 4 cut(s) 5, 11, 224, 291
Bsp143I GATC 4 cut(s) 134, 232, 244, 294
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 3 cut(s) 288, 348, 393
BspANI GGCC 4 cut(s) 5, 11, 224, 291
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 311
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 2 cut(s) 142, 240
BsrDI GCAATG 2 cut(s) 12, 349
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 4 cut(s) 134, 232, 244, 294
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 226, 314
Bst4CI ACNGT 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 402
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 97, 182
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 4 cut(s) 137, 235, 247, 297
BstMBI GATC 4 cut(s) 134, 232, 244, 294
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 2 cut(s) 226, 314
BstSCI CCNGG 3 cut(s) 209, 224, 312
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 177
BsuRI GGCC 4 cut(s) 5, 11, 224, 291
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 97, 182
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 122
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 59, 186
CviAII CATG 3 cut(s) 7, 73, 145
CviQI GTAC 2 cut(s) 59, 186
DdeI CTNAG 1 cut(s) 402
DpnI GATC 4 cut(s) 136, 234, 246, 296
DpnII GATC 4 cut(s) 134, 232, 244, 294
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 3 cut(s) 3, 9, 289
Eco130I CCWWGG 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 224, 312
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 3 cut(s) 10, 76, 148
FaiI YATR 3 cut(s) 8, 74, 146
FatI CATG 3 cut(s) 6, 72, 144
Fnu4HI GCNGC 3 cut(s) 191, 289, 394
FokI GGATG 2 cut(s) 104, 189
Fsp4HI GCNGC 3 cut(s) 191, 289, 394
FspBI CTAG 2 cut(s) 18, 248
GluI GCNGC 3 cut(s) 191, 289, 394
HaeIII GGCC 4 cut(s) 5, 11, 224, 291
HapII CCGG 1 cut(s) 210
HgaI GACGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 3 cut(s) 10, 76, 148
HinfI GANTC 2 cut(s) 108, 119
HpaII CCGG 1 cut(s) 210
HphI GGTGA 3 cut(s) 250, 362, 377
Hpy166II GTNNAC 2 cut(s) 353, 385
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 353, 385
Hpy99I CGWCG 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 402
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 3 cut(s) 10, 76, 148
Kzo9I GATC 4 cut(s) 134, 232, 244, 294
Lsp1109I GCAGC 1 cut(s) 177
MaeI CTAG 2 cut(s) 18, 248
MaeIII GTNAC 2 cut(s) 238, 365
MalI GATC 4 cut(s) 136, 234, 246, 296
MboI GATC 4 cut(s) 134, 232, 244, 294
MlsI TGGCCA 2 cut(s) 5, 11
MluNI TGGCCA 2 cut(s) 5, 11
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 292, 370
Mox20I TGGCCA 2 cut(s) 5, 11
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 3 cut(s) 211, 226, 314
MvaI CCWGG 2 cut(s) 226, 314
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 211
NcoI CCATGG 1 cut(s) 6
NdeII GATC 4 cut(s) 134, 232, 244, 294
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 10, 76, 148
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 238, 365
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 2 cut(s) 108, 119
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 192, 290, 395
Psp6I CCWGG 2 cut(s) 224, 312
PspGI CCWGG 2 cut(s) 224, 312
PspN4I GGNNCC 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 60, 187
RsaNI GTAC 2 cut(s) 59, 186
SatI GCNGC 3 cut(s) 191, 289, 394
Sau3AI GATC 4 cut(s) 134, 232, 244, 294
ScrFI CCNGG 3 cut(s) 211, 226, 314
SetI ASST 6 cut(s) 101, 221, 240, 303, 322, 334
SsiI CCGC 3 cut(s) 288, 348, 393
SspMI CTAG 2 cut(s) 18, 248
StyD4I CCNGG 3 cut(s) 209, 224, 312
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 4 cut(s) 69, 111, 137, 297
TauI GCSGC 2 cut(s) 291, 396
TfiI GAWTC 2 cut(s) 108, 119
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 238, 365
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 2 cut(s) 238, 365
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 172
Tth111I GACNNNGTC 1 cut(s) 74
XspI CTAG 2 cut(s) 18, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.