RLG00000005037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001119
Physical Location & Seq
Forward (+)
64508468 .. 64509312
845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005037

Sequence Viewer

Length: 639 bp
ATGGCCATGGCCATTGCTAACCTTGTGGTCGATTGTTTATTGTTTCTTGTTGCTTTCGTACTGTTGCTAGAAGCGCCGCCTTGGATTTGGTTCCCAGCGGTTGTTGACTGGGACGGCTGTTATGGTGTTCTGGTGGCTTCTCTGAGACCAAGCTTTGACAGCGTGGATCTGAGTTGGGCGGATATGATCGGGGTTGATTTGGCTGACAGTTGTCGGGGTTTCAAGCCAGAGTTTGCTATTTTTAGATCGAAGGAAATGGTGGATGATCGCAATGTTCGCACTGATGTTAGACATGGTGGTTCGCTGCAACGTCGACGAGATCGCGTTGGCGACGGCAGTGAATTCTTTGGCGGCGATTGGACGAAAGATGTGGATGATGGAGGCTGGTCTTGGTGGGTGGCTTGGGCCTCCATGTGGGCCTGTTTCTTTGGGCTAGGGTTCCTGGTGGGCTTTTCTGAGTTGTGTTGGTGGGTGTGGTGGTTCTCGGCGCATCAGCAAAGTGATATTTTATTTGTTCTATGTTTGGTTTTGTTCCCCCTTTTCAAAGTGAAGGGCGAGACTGTGCAGATTGTGGAGGCTGCTACTGTAAAGGGTAATGTGGAAGGTGCTATGTCACTTTCTACTAATAGTTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.85

Weight (kDa)

4.54

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AccII CGCG 1 cut(s) 324
AciI CCGC 4 cut(s) 77, 98, 179, 351
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 2 cut(s) 3, 9
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 2 cut(s) 223, 544
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 139, 551
AlwI GGATC 1 cut(s) 174
AoxI GGCC 4 cut(s) 3, 9, 405, 417
ApeKI GCWGC 2 cut(s) 304, 578
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 76, 490
AspS9I GGNCC 2 cut(s) 405, 417
BalI TGGCCA 2 cut(s) 5, 11
BbvI GCAGC 2 cut(s) 291, 565
BccI CCATC 1 cut(s) 371
BceAI ACGGC 2 cut(s) 130, 349
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 139, 551
BfaI CTAG 2 cut(s) 68, 434
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 4 cut(s) 77, 305, 352, 579
BlsI GCNGC 4 cut(s) 78, 306, 353, 580
Bme1390I CCNGG 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 405, 417
BmiI GGNNCC 2 cut(s) 92, 440
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 1 cut(s) 118
BoxI GACNNNNGTC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 2 cut(s) 12, 277
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 2 cut(s) 268, 379
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMI GCAATG 2 cut(s) 12, 277
BseMII CTCAG 3 cut(s) 134, 161, 447
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 291, 565
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 4 cut(s) 5, 11, 407, 419
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 2 cut(s) 139, 551
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 4 cut(s) 5, 11, 407, 419
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 5 cut(s) 166, 186, 245, 265, 319
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 77, 98, 179, 351
BspANI GGCC 4 cut(s) 5, 11, 407, 419
BspCNI CTCAG 3 cut(s) 135, 162, 448
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 92, 440
BspPI GGATC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 12, 277
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 6, 80
BssMI GATC 5 cut(s) 166, 186, 245, 265, 319
BssT1I CCWWGG 2 cut(s) 6, 80
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 63, 209, 562, 586
BstDEI CTNAG 3 cut(s) 143, 170, 456
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 2 cut(s) 268, 379
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 76, 490
BstKTI GATC 5 cut(s) 169, 189, 248, 268, 322
BstMAI GTCTC 2 cut(s) 139, 551
BstMBI GATC 5 cut(s) 166, 186, 245, 265, 319
BstMWI GCNNNNNNNGC 3 cut(s) 73, 159, 276
BstNI CCWGG 1 cut(s) 443
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 441
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 2 cut(s) 291, 565
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 4 cut(s) 5, 11, 407, 419
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 268, 379
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 2 cut(s) 279, 343
CfoI GCGC 2 cut(s) 76, 490
Cfr13I GGNCC 2 cut(s) 405, 417
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 7, 293, 412
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 3 cut(s) 143, 170, 456
DpnI GATC 5 cut(s) 168, 188, 247, 267, 321
DpnII GATC 5 cut(s) 166, 186, 245, 265, 319
EaeI YGGCCR 2 cut(s) 3, 9
EciI GGCGGA 1 cut(s) 194
Eco130I CCWWGG 2 cut(s) 6, 80
Eco31I GGTCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 6, 80
ErhI CCWWGG 2 cut(s) 6, 80
FaeI CATG 3 cut(s) 10, 296, 415
FaiI YATR 7 cut(s) 8, 123, 185, 294, 413, 520, 611
FaqI GGGAC 1 cut(s) 125
FatI CATG 3 cut(s) 6, 292, 411
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 4 cut(s) 77, 305, 352, 579
FokI GGATG 2 cut(s) 275, 386
Fsp4HI GCNGC 4 cut(s) 77, 305, 352, 579
FspBI CTAG 2 cut(s) 68, 434
GlaI GCGC 2 cut(s) 75, 489
GluI GCNGC 4 cut(s) 77, 305, 352, 579
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 4 cut(s) 5, 11, 407, 419
HhaI GCGC 2 cut(s) 76, 490
Hin1II CATG 3 cut(s) 10, 296, 415
Hin6I GCGC 2 cut(s) 74, 488
HinP1I GCGC 2 cut(s) 74, 488
HincII GTYRAC 2 cut(s) 106, 314
HindII GTYRAC 2 cut(s) 106, 314
HindIII AAGCTT 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 106, 314
Hpy188I TCNGA 3 cut(s) 144, 171, 457
Hpy8I GTNNAC 2 cut(s) 106, 314
Hpy99I CGWCG 3 cut(s) 315, 318, 335
HpyAV CCTTC 3 cut(s) 244, 544, 596
HpyCH4III ACNGT 4 cut(s) 63, 209, 562, 586
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 307, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 159, 276
HpyF3I CTNAG 3 cut(s) 143, 170, 456
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 3 cut(s) 10, 296, 415
HspAI GCGC 2 cut(s) 74, 488
Kzo9I GATC 5 cut(s) 166, 186, 245, 265, 319
LpnPI CCDG 8 cut(s) 94, 108, 116, 240, 370, 428, 433, 455
Lsp1109I GCAGC 2 cut(s) 291, 565
LweI GCATC 1 cut(s) 499
MaeI CTAG 2 cut(s) 68, 434
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 612
MalI GATC 5 cut(s) 168, 188, 247, 267, 321
MboI GATC 5 cut(s) 166, 186, 245, 265, 319
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 5, 11
MluCI AATT 2 cut(s) 341, 633
MluNI TGGCCA 2 cut(s) 5, 11
MnlI CCTC 3 cut(s) 374, 418, 568
Mox20I TGGCCA 2 cut(s) 5, 11
MscI TGGCCA 2 cut(s) 5, 11
MseI TTAA 2 cut(s) 632, 637
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 3 cut(s) 73, 159, 276
NcoI CCATGG 1 cut(s) 6
NdeII GATC 5 cut(s) 166, 186, 245, 265, 319
NlaIII CATG 3 cut(s) 10, 296, 415
NlaIV GGNNCC 2 cut(s) 92, 440
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 1 cut(s) 612
PkrI GCNGC 4 cut(s) 78, 306, 353, 580
PshAI GACNNNNGTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 92, 440
PspPI GGNCC 2 cut(s) 405, 417
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SalI GTCGAC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 632, 637
SatI GCNGC 4 cut(s) 77, 305, 352, 579
Sau3AI GATC 5 cut(s) 166, 186, 245, 265, 319
Sau96I GGNCC 2 cut(s) 405, 417
ScrFI CCNGG 1 cut(s) 443
SetI ASST 4 cut(s) 24, 155, 313, 607
SfaNI GCATC 1 cut(s) 499
SgrDI CGTCGACG 1 cut(s) 312
Sse9I AATT 2 cut(s) 341, 633
SsiI CCGC 4 cut(s) 77, 98, 179, 351
SspMI CTAG 2 cut(s) 68, 434
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 4 cut(s) 63, 209, 562, 586
TaiI ACGT 1 cut(s) 313
TaqI TCGA 3 cut(s) 30, 248, 313
TasI AATT 2 cut(s) 341, 633
TauI GCSGC 2 cut(s) 79, 354
Tru1I TTAA 2 cut(s) 632, 637
Tru9I TTAA 2 cut(s) 632, 637
TscAI CASTG 2 cut(s) 286, 343
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 2 cut(s) 304, 578
Tsp45I GTSAC 1 cut(s) 612
TspRI CASTG 2 cut(s) 286, 343
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 2 cut(s) 68, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.