RLG00000013068

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001119
Physical Location & Seq
Reverse (-)
25726489 .. 25732396
5908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013068

Sequence Viewer

Length: 882 bp
ATGGCTGGTGCCACAAATGGGATCGCAGCGCTGTCTTTTCCAGGTGTGTTTTACCTCAACCGGGGGCGTGCCAGTGGTCGTCTTTTTCTTTTTTTCCTTCTCTTTGTACTTGCTGGTTGCAGCGTTGGAGGAGGCGTGATGGATCCAGATTTGCTTTTGGGTCCTGCTGGGAGGATCGATGGAGCTGCCATCGATCCTTGGAGCGTCGTTAATTTCGGAGGCGTGGACGCCAGTGTTAGTGATTGGGTTGGTTGCTGGGCTGCAGGTGGGCAAGGTGGTATGACTTCCAACTTTGTCCGGCTGATGGAATCTGGAGTCTTGAGATGCCGAAGTTTCCCGACGAGGCACACTGGGGGAAGTTTCTCGGCGACGATGCGAGCTCTCGGTGGTGGAGGCTTTGCAGCGGTTGTGCCTACTCATTGCATTGGTAGCACTCTCTGGCATGACTGGGCTTGGTCGATAGAGGACAAGGGGACCGATAGTGATCCCGTCCGTTCTTCGCCGGTAGAGATGGCTTCGAAGTCTAGTGGTAATGACTGGGGCGATGTGGCTATTGATGACGGAGTCGGAAATGGCAGCATGGAAGGGGGAGATGGAAGTGGAGGTGGAGGTGGAGGTTGGTGCGGCGGCAAAGCCGTTGTATCCACTTCTCCACTCAAACTGCGGACGGACTGGGCCGCTTGGGCCTTGGACTGCTTTATGGTGGTGTCTGTGGGTGACGCGACCCGGGTTCAGGTCTTCATGCTTGGCAAGGCAGGTTGCAAGTGGCGGTCAAGAGATGATGCAATGGTTTGGGAGATCCTTGACATCAGTTGGTTTGGAGGTCAGGCTGCCAGTGTGTTGGAGATGATAGTGGGCTGCTGTGGTATCCATAGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

30.28

Weight (kDa)

5.01

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 2 cut(s) 254, 746
AccB1I GGYRCC 1 cut(s) 8
AccII CGCG 1 cut(s) 722
AciI CCGC 6 cut(s) 404, 624, 627, 664, 678, 769
AclWI GGATC 7 cut(s) 29, 137, 150, 182, 188, 479, 793
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 1 cut(s) 108
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 4 cut(s) 18, 61, 304, 733
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 185, 380
AluI AGCT 2 cut(s) 185, 380
Alw21I GWGCWC 1 cut(s) 382
AlwI GGATC 7 cut(s) 29, 137, 150, 182, 188, 479, 793
Ama87I CYCGRG 1 cut(s) 726
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 2 cut(s) 675, 684
ApeKI GCWGC 8 cut(s) 26, 120, 185, 260, 401, 576, 830, 858
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 4 cut(s) 161, 474, 675, 684
AsuC2I CCSGG 3 cut(s) 62, 727, 728
AsuHPI GGTGA 1 cut(s) 728
AsuII TTCGAA 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 2 cut(s) 161, 474
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 730
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 8 cut(s) 38, 132, 172, 247, 413, 588, 817, 845
BccI CCATC 6 cut(s) 133, 173, 197, 298, 505, 587
BceAI ACGGC 1 cut(s) 620
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 2 cut(s) 652, 878
BcnI CCSGG 3 cut(s) 62, 727, 728
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 254, 746
BfuI GTATCC 2 cut(s) 652, 878
BglI GCCNNNNNGGC 1 cut(s) 683
Bme1390I CCNGG 4 cut(s) 42, 62, 727, 728
Bme18I GGWCC 2 cut(s) 161, 474
BmeT110I CYCGRG 1 cut(s) 726
BmgT120I GGNCC 4 cut(s) 161, 474, 675, 684
BmiI GGNNCC 4 cut(s) 10, 144, 162, 475
BmrFI CCNGG 4 cut(s) 42, 62, 727, 728
BmrI ACTGGG 4 cut(s) 360, 457, 547, 682
BmsI GCATC 3 cut(s) 314, 363, 772
BmuI ACTGGG 4 cut(s) 360, 457, 547, 682
BpiI GAAGAC 1 cut(s) 730
BpmI CTGGAG 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 340
BpuMI CCSGG 3 cut(s) 62, 727, 728
Bsa29I ATCGAT 2 cut(s) 177, 192
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 4 cut(s) 61, 197, 687, 726
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 61, 304, 733
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 7 cut(s) 72, 231, 355, 452, 542, 677, 834
Bse3DI GCAATG 2 cut(s) 418, 792
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 42
BseCI ATCGAT 2 cut(s) 177, 192
BseDI CCNNGG 4 cut(s) 61, 197, 687, 726
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 18, 61, 304, 733
BseMI GCAATG 2 cut(s) 418, 792
BseNI ACTGG 7 cut(s) 72, 231, 355, 452, 542, 677, 834
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 8 cut(s) 38, 132, 172, 247, 413, 588, 817, 845
BseYI CCCAGC 2 cut(s) 167, 255
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 2 cut(s) 677, 686
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 2 cut(s) 177, 192
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 4 cut(s) 61, 298, 503, 727
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 4 cut(s) 18, 61, 304, 733
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 2 cut(s) 677, 686
BsoBI CYCGRG 1 cut(s) 726
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 6 cut(s) 21, 142, 174, 193, 484, 798
BspACI CCGC 6 cut(s) 404, 624, 627, 664, 678, 769
BspANI GGCC 2 cut(s) 677, 686
BspDI ATCGAT 2 cut(s) 177, 192
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 4 cut(s) 10, 144, 162, 475
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 2 cut(s) 254, 746
BspPI GGATC 7 cut(s) 29, 137, 150, 182, 188, 479, 793
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 418, 792
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 7 cut(s) 72, 231, 355, 452, 542, 677, 834
BssAI RCCGGY 1 cut(s) 502
BssECI CCNNGG 4 cut(s) 61, 197, 687, 726
BssMI GATC 6 cut(s) 21, 142, 174, 193, 484, 798
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 2 cut(s) 197, 687
Bst2UI CCWGG 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 69, 378
BstFNI CGCG 1 cut(s) 722
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 6 cut(s) 24, 145, 177, 196, 487, 801
BstMBI GATC 6 cut(s) 21, 142, 174, 193, 484, 798
BstMWI GCNNNNNNNGC 2 cut(s) 429, 683
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 4 cut(s) 40, 60, 725, 726
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 8 cut(s) 38, 132, 172, 247, 413, 588, 817, 845
BstV2I GAAGAC 1 cut(s) 730
BstX2I RGATCY 2 cut(s) 142, 798
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 2 cut(s) 142, 798
Bsu15I ATCGAT 2 cut(s) 177, 192
BsuI GTATCC 2 cut(s) 652, 878
BsuRI GGCC 2 cut(s) 677, 686
BsuTUI ATCGAT 2 cut(s) 177, 192
BtgZI GCGATG 1 cut(s) 558
BtsIMutI CAGTG 4 cut(s) 79, 238, 348, 841
BveI ACCTGC 2 cut(s) 254, 746
Cac8I GCNNGC 2 cut(s) 69, 378
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 502
Cfr13I GGNCC 4 cut(s) 161, 474, 675, 684
Cfr9I CCCGGG 1 cut(s) 726
ClaI ATCGAT 2 cut(s) 177, 192
CseI GACGC 3 cut(s) 193, 236, 728
Csp6I GTAC 1 cut(s) 107
CviAII CATG 3 cut(s) 443, 580, 742
CviQI GTAC 1 cut(s) 107
DpnI GATC 6 cut(s) 23, 144, 176, 195, 486, 800
DpnII GATC 6 cut(s) 21, 142, 174, 193, 484, 798
Ecl136II GAGCTC 1 cut(s) 380
Eco130I CCWWGG 2 cut(s) 197, 687
Eco24I GRGCYC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 161, 474
Eco47III AGCGCT 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 726
EcoICRI GAGCTC 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 197, 687
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 2 cut(s) 197, 687
FaeI CATG 3 cut(s) 446, 583, 745
FaiI YATR 6 cut(s) 281, 444, 581, 701, 743, 873
FaqI GGGAC 1 cut(s) 487
FatI CATG 3 cut(s) 442, 579, 741
FriOI GRGCYC 1 cut(s) 382
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 30
GsaI CCCAGC 2 cut(s) 171, 259
GsuI CTGGAG 1 cut(s) 333
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 677, 686
HapII CCGG 4 cut(s) 61, 298, 503, 727
HgaI GACGC 3 cut(s) 193, 236, 728
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 446, 583, 745
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 3 cut(s) 308, 315, 564
HpaII CCGG 4 cut(s) 61, 298, 503, 727
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 218, 569
Hpy188III TCNNGA 5 cut(s) 146, 312, 319, 337, 774
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 3 cut(s) 209, 343, 373
HpyAV CCTTC 2 cut(s) 107, 578
HpyCH4V TGCA 6 cut(s) 120, 263, 401, 423, 762, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 429, 683
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 446, 583, 745
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 6 cut(s) 21, 142, 174, 193, 484, 798
LmnI GCTCC 2 cut(s) 182, 201
Lsp1109I GCAGC 8 cut(s) 38, 132, 172, 247, 413, 588, 817, 845
LweI GCATC 3 cut(s) 314, 363, 772
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 716
MalI GATC 6 cut(s) 23, 144, 176, 195, 486, 800
MboI GATC 6 cut(s) 21, 142, 174, 193, 484, 798
MboII GAAGA 2 cut(s) 489, 730
MflI RGATCY 2 cut(s) 142, 798
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 1 cut(s) 211
MlyI GAGTC 2 cut(s) 324, 573
MmeI TCCRAC 4 cut(s) 106, 312, 547, 822
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 4 cut(s) 61, 298, 503, 727
MspR9I CCNGG 4 cut(s) 42, 62, 727, 728
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 2 cut(s) 429, 683
NciI CCSGG 3 cut(s) 62, 727, 728
NdeII GATC 6 cut(s) 21, 142, 174, 193, 484, 798
NlaIII CATG 3 cut(s) 446, 583, 745
NlaIV GGNNCC 4 cut(s) 10, 144, 162, 475
NmeAIII GCCGAG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 716
NspV TTCGAA 1 cut(s) 518
PaqCI CACCTGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 308
PflFI GACNNNGTC 1 cut(s) 563
PleI GAGTC 2 cut(s) 323, 572
PpsI GAGTC 2 cut(s) 323, 572
PpuMI RGGWCCY 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 2 cut(s) 167, 255
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 4 cut(s) 10, 144, 162, 475
PspPI GGNCC 4 cut(s) 161, 474, 675, 684
PspPPI RGGWCCY 1 cut(s) 161
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 2 cut(s) 142, 798
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SacI GAGCTC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 6 cut(s) 21, 142, 174, 193, 484, 798
Sau96I GGNCC 4 cut(s) 161, 474, 675, 684
SchI GAGTC 2 cut(s) 324, 573
ScrFI CCNGG 4 cut(s) 42, 62, 727, 728
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 3 cut(s) 314, 363, 772
SfcI CTRYAG 1 cut(s) 261
SfiI GGCCNNNNNGGCC 1 cut(s) 683
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 2 cut(s) 161, 474
SmaI CCCGGG 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 1 cut(s) 211
SsiI CCGC 6 cut(s) 404, 624, 627, 664, 678, 769
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 40, 60, 725, 726
StyI CCWWGG 2 cut(s) 197, 687
TaqI TCGA 4 cut(s) 177, 192, 458, 518
TaqII GACCGA 1 cut(s) 491
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 106
TauI GCSGC 3 cut(s) 627, 630, 680
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 4 cut(s) 79, 238, 355, 841
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 8 cut(s) 26, 120, 185, 260, 401, 576, 830, 858
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 1 cut(s) 730
TspGWI ACGGA 3 cut(s) 482, 576, 683
TspMI CCCGGG 1 cut(s) 726
TspRI CASTG 4 cut(s) 79, 238, 355, 841
Tth111I GACNNNGTC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 161, 474
XmaI CCCGGG 1 cut(s) 726
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.