RLG00000028913

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001119
Physical Location & Seq
Reverse (-)
30160375 .. 30162216
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028913

Sequence Viewer

Length: 519 bp
ATGAATAGTAAGTTAGAGTCATTAAATCCGTCGAGCCTTTCATATCTGAATGCAACGATGCTAGCTCAGGAACTTAAACTTTGCAGACATGTAGGGCAAGGAGCGCCGCCTTGGATTTGGCTCCAAGCGGTTGCTGTCGGGGATGGTAGTTCTAGTTACCTGATGGCTTCTCTGAGGCTAAGTTTTGACTGTGTGGGTTTGTGTTGGTCTGTATCGGTTCGATTCGACTGGGTCACAGATCGGAGTCATCTGGTTGGTTTCTTTGAGGTGGTTGGGTGTCGACACAAATTAGGGACTGCGTTTTTCTTTGCTTGCGAAGGTATCAGAGGTTCTGTTAGAGGCGGTGATGTCTCAAGCTTCTTCAATTCTGCCTACCTTCGTTTACTACTAGCGGCGGTGAAGTCTAGGATCGTGGTTTTGGTGCTTGCGGAGGGGTTTGATCTGAGATTGATCCTGAGGGATCAGAATATGGTGCTAACCTGGGTGCCATTCGATCTTGGTGTTGGTGTAGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.9

Weight (kDa)

8.27

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 280
AciI CCGC 6 cut(s) 107, 128, 342, 392, 395, 428
AclWI GGATC 3 cut(s) 416, 445, 468
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 479
AluBI AGCT 3 cut(s) 65, 357, 512
AluI AGCT 3 cut(s) 65, 357, 512
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 3 cut(s) 416, 445, 468
AspLEI GCGC 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 356, 409
AsuNHI GCTAGC 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 455
BanI GGYRCC 1 cut(s) 484
BccI CCATC 2 cut(s) 137, 157
BciT130I CCWGG 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 4 cut(s) 62, 153, 389, 405
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 2 cut(s) 107, 393
BlsI GCNGC 2 cut(s) 108, 394
Bme1390I CCNGG 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 122, 486
BmrFI CCNGG 1 cut(s) 481
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 238
Bpu10I CCTNAGC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 110, 480
Bse1I ACTGG 1 cut(s) 233
Bse21I CCTNAGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 481
BseDI CCNNGG 2 cut(s) 110, 480
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 4 cut(s) 80, 164, 434, 446
BseNI ACTGG 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 484
BslFI GGGAC 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 55
Bsp143I GATC 6 cut(s) 238, 408, 439, 450, 460, 493
BspACI CCGC 6 cut(s) 107, 128, 342, 392, 395, 428
BspCNI CTCAG 4 cut(s) 79, 165, 435, 447
BspLI GGNNCC 2 cut(s) 122, 486
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 416, 445, 468
BspT107I GGYRCC 1 cut(s) 484
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 110, 480
BssMI GATC 6 cut(s) 238, 408, 439, 450, 460, 493
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 63, 313, 426
BstDEI CTNAG 5 cut(s) 66, 173, 179, 443, 455
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 6 cut(s) 241, 411, 442, 453, 463, 496
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 6 cut(s) 238, 408, 439, 450, 460, 493
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 481
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 479
Bsu36I CCTNAGG 1 cut(s) 455
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 63, 313, 426
CfoI GCGC 1 cut(s) 106
CviAII CATG 1 cut(s) 89
CviJI RGCY 7 cut(s) 36, 65, 121, 167, 178, 357, 512
CviKI_1 RGCY 7 cut(s) 36, 65, 121, 167, 178, 357, 512
DdeI CTNAG 5 cut(s) 66, 173, 179, 443, 455
DpnI GATC 6 cut(s) 240, 410, 441, 452, 462, 495
DpnII GATC 6 cut(s) 238, 408, 439, 450, 460, 493
Eco130I CCWWGG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 479
EcoT14I CCWWGG 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 92
FaiI YATR 3 cut(s) 43, 90, 470
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 107, 393
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 107, 393
FspBI CTAG 4 cut(s) 62, 153, 389, 405
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 107, 393
HaeII RGCGCY 1 cut(s) 107
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 3 cut(s) 17, 222, 244
HphI GGTGA 2 cut(s) 356, 409
Hpy166II GTNNAC 2 cut(s) 281, 383
Hpy188I TCNGA 6 cut(s) 48, 174, 243, 326, 444, 465
Hpy188III TCNNGA 2 cut(s) 68, 454
Hpy8I GTNNAC 2 cut(s) 281, 383
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 311, 386
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 53, 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 5 cut(s) 66, 173, 179, 443, 455
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 6 cut(s) 238, 408, 439, 450, 460, 493
LmnI GCTCC 2 cut(s) 101, 126
LpnPI CCDG 7 cut(s) 53, 173, 214, 236, 466, 467, 493
LweI GCATC 1 cut(s) 48
MaeI CTAG 4 cut(s) 62, 153, 389, 405
MaeIII GTNAC 2 cut(s) 155, 232
MalI GATC 6 cut(s) 240, 410, 441, 452, 462, 495
MboI GATC 6 cut(s) 238, 408, 439, 450, 460, 493
MboII GAAGA 1 cut(s) 352
MluCI AATT 2 cut(s) 287, 364
MlyI GAGTC 2 cut(s) 26, 253
MnlI CCTC 6 cut(s) 168, 259, 320, 332, 424, 450
MseI TTAA 2 cut(s) 23, 75
MspR9I CCNGG 1 cut(s) 481
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 481
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 6 cut(s) 238, 408, 439, 450, 460, 493
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 122, 486
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 92
PciI ACATGT 1 cut(s) 88
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 222
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 108, 394
PleI GAGTC 2 cut(s) 25, 252
PpsI GAGTC 2 cut(s) 25, 252
PscI ACATGT 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 479
PspGI CCWGG 1 cut(s) 479
PspN4I GGNNCC 2 cut(s) 122, 486
PsrI GAACNNNNNNTAC 2 cut(s) 313, 345
PsyI GACNNNGTC 1 cut(s) 230
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 23, 75
SatI GCNGC 2 cut(s) 107, 393
Sau3AI GATC 6 cut(s) 238, 408, 439, 450, 460, 493
SchI GAGTC 2 cut(s) 26, 253
ScrFI CCNGG 1 cut(s) 481
SetI ASST 9 cut(s) 67, 162, 270, 322, 331, 359, 378, 482, 514
SfaNI GCATC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 287, 364
SsiI CCGC 6 cut(s) 107, 128, 342, 392, 395, 428
SspMI CTAG 4 cut(s) 62, 153, 389, 405
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 5 cut(s) 32, 220, 225, 280, 492
TasI AATT 2 cut(s) 287, 364
TauI GCSGC 2 cut(s) 109, 395
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 23, 75
Tru9I TTAA 2 cut(s) 23, 75
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 17, 30
TspGWI ACGGA 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 230
XceI RCATGY 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 4 cut(s) 62, 153, 389, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.