Rh5DG260100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001119
Physical Location & Seq
Forward (+)
31072740 .. 31073501
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG260100.1

Sequence Viewer

Length: 555 bp
ATGGTCATGGCTATTGCTAGTCTGGTGGCTAAGCGTTTCTTTCTTATTGTTGCTTTTGTTTTGTTGCTTGGAGCATCGCCTTGGTGTGGGTTCCCTATGGTTGTTGTTTGGGACGGTAGTTTTGATGTTTGGGAGGCAGATCTGAGGCCGAGCTCTATCGGCGTGGCTTTGGTTTGGTCTGAATTGGATCGGCGCGACTGGGTTTTGGATTGTGGTCGTCAAACTACCGACGGTGGTGGGGATTGCATAATCGCTGTGGTTGGTGGGTGGGAACAGAAGGTTATATGCACCTCCTCTGGTTTTGGTGCCTCGTTCGGCGGTTCTAGTTCTGATTGTTTTGGGTGTGATGGTTTTGTTTCTGCGTCTACGTTCTGGGGTTGGCGTGAGTGTGATGGCTATCATATGGCTTCGGGGTGTCTGGAGATGAGGACTGAGCTGATCTTCTTAGGCCCGAACCCTCCGATGTTAGGTGGCAGTTCAGGCGTTTGGGATTTGGACTTGGGAACGTCTTGGTCTTGTTGCAGGGGTTCATTCTCCCTGGTGGACGCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

19.67

Weight (kDa)

4.27

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 318
AclWI GGATC 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 86, 467
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 2 cut(s) 153, 436
AluI AGCT 2 cut(s) 153, 436
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 146, 448
ArsI GACNNNNNNTTYG 2 cut(s) 104, 136
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 449
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BccI CCATC 2 cut(s) 341, 386
BciT130I CCWGG 1 cut(s) 539
BfaI CTAG 2 cut(s) 18, 324
BglII AGATCT 1 cut(s) 139
BlpI GCTNAGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 92, 307
BmrFI CCNGG 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 2 cut(s) 80, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 467
Bse1I ACTGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 2 cut(s) 80, 537
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 86, 467
BseMII CTCAG 2 cut(s) 134, 423
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 2 cut(s) 148, 450
BshNI GGYRCC 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 155
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 86, 467
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 148, 450
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 139, 187, 438
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 318
BspANI GGCC 2 cut(s) 148, 450
BspCNI CTCAG 2 cut(s) 135, 424
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 92, 307
BspPI GGATC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 305
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 80, 537
BssMI GATC 3 cut(s) 139, 187, 438
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 116, 233
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 4 cut(s) 30, 143, 432, 445
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 3 cut(s) 142, 190, 441
BstMBI GATC 3 cut(s) 139, 187, 438
BstMWI GCNNNNNNNGC 2 cut(s) 159, 480
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstUI CGCG 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 2 cut(s) 148, 450
BtgZI GCGATG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 351
CviAII CATG 1 cut(s) 7
DdeI CTNAG 4 cut(s) 30, 143, 432, 445
DpnI GATC 3 cut(s) 141, 189, 440
DpnII GATC 3 cut(s) 139, 187, 438
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 1 cut(s) 10
FaiI YATR 7 cut(s) 8, 98, 248, 284, 286, 402, 404
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 6
FauNDI CATATG 1 cut(s) 402
FblI GTMKAC 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 2 cut(s) 18, 324
GlaI GCGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 2 cut(s) 148, 450
HgaI GACGC 1 cut(s) 351
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 366, 544
Hpy188I TCNGA 4 cut(s) 144, 181, 331, 462
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 2 cut(s) 366, 544
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 116, 233
HpyCH4IV ACGT 2 cut(s) 368, 506
HpyCH4V TGCA 3 cut(s) 246, 288, 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 480
HpyF3I CTNAG 4 cut(s) 30, 143, 432, 445
HpySE526I ACGT 2 cut(s) 368, 506
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 139, 187, 438
LmnI GCTCC 1 cut(s) 71
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 18, 324
MaeII ACGT 2 cut(s) 368, 506
MalI GATC 3 cut(s) 141, 189, 440
MboI GATC 3 cut(s) 139, 187, 438
MboII GAAGA 1 cut(s) 433
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 182
MnlI CCTC 7 cut(s) 127, 138, 301, 304, 319, 420, 468
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 159, 480
NdeI CATATG 1 cut(s) 402
NdeII GATC 3 cut(s) 139, 187, 438
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 92, 307
NmeAIII GCCGAG 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 92, 307
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 139
SacI GAGCTC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 139, 187, 438
Sau96I GGNCC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 1 cut(s) 155
SetI ASST 7 cut(s) 155, 282, 293, 371, 438, 472, 509
SfaNI GCATC 1 cut(s) 83
Sse9I AATT 1 cut(s) 182
SsiI CCGC 1 cut(s) 318
SspMI CTAG 2 cut(s) 18, 324
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 116, 233
TaiI ACGT 2 cut(s) 371, 509
TasI AATT 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 2 cut(s) 18, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.