Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001119

Physical Location & Seq

Genomic Coordinates Forward (+)

74732096 .. 74732752

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCCATTGCTGGCCTGGTGGCTAATCGATTGTTTCTTCTTGTTGCATTTGTTCTGTCGCTTGGAGTGACGCCCTGGATTGGGATCCTTGTGGTGGTTGTCTGGGATGGCAGTTCTGATGTTTTGGTGGCGGATCTGAGGCCGGGTTCTGATGGCGTGGATCTGGTTTGGGATGCCTTGGCTCACTTTGGTTTTGACTGTATTGGATGTGATGGGGATTCTGCAATCACTGGTTTTGTTCCCGTCCCTCTGCTCTGGGGTTGGCTTGAGCATGGTGGCGGTCGATTTGTTTCGGGGCGGCTGGAGATAAGGACCGATCTGATTTCTTTGGGCCTGGATCCTCTGATGATAGGCGGTGGTTTACGGGTTTGGTTTTTGGACTCGGGAATGTCTTGGTCTGGTGGTAAGAGGTCATTCTCCAAGATAGACACCGGCGGAGGAGAGGTTGCTGTTGGCAGTGGAGACAGTTGTGGCTGCTGTGTGTGGGACGGTGACTTTGGTGGACTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

17.75

Weight (kDa)

4.28

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001119)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0467591 RchiOBHm_Chr5g0032501
rosa_laevigata	RLG00000002973 RLG00000003281 RLG00000005037 RLG00000005330 RLG00000007764 RLG00000007990 RLG00000013068 RLG00000017718 RLG00000018368 RLG00000019943 RLG00000021384 RLG00000024977 RLG00000028913 RLG00000029163 RLG00000031893 RLG00000032884 RLG00000034170 RLG00000035178 RLG00000036453
rosa_roxburghii	Rroxscaffold_4G00314350 Rroxscaffold_5G00347240
rosa_rugosa	Rorug02G0408600
rosa_samantha	Rh1AG026100 Rh1AG154100 Rh1BG123400 Rh1CG144900 Rh1DG076600 Rh2AG237100 Rh2AG355400 Rh2AG380000 Rh2CG241200 Rh2DG244600 Rh2DG378200 Rh2DG378300 Rh3AG136400 Rh3AG209400 Rh3BG255300 Rh3CG251700 Rh3DG236000 Rh3DG287500 Rh4AG197600 Rh4AG197700 Rh4DG195300 Rh4DG195400 Rh5AG250200 Rh5AG290200 Rh5BG251900 Rh5CG283900 Rh5DG260100 Rh6AG241100 Rh6AG365600 Rh6CG442000 Rh7BG228600 Rh7CG248200 Rh7CG248300 Rh7CG492800
rosa_wichuraiana	Rw0G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	131, 279, 298, 354, 435
AclWI	GGATC	6 cut(s)	79, 92, 141, 168, 332, 345
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	80, 81, 94
AjnI	CCWGG	3 cut(s)	15, 74, 333
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	6 cut(s)	79, 92, 141, 168, 332, 345
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	4 cut(s)	3, 13, 140, 331
ApeKI	GCWGC	1 cut(s)	474
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspS9I	GGNCC	2 cut(s)	312, 331
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	312
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	84, 337
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	3 cut(s)	101, 146, 206
BciT130I	CCWGG	3 cut(s)	17, 76, 335
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	1 cut(s)	506
BisI	GCNGC	2 cut(s)	299, 475
BlsI	GCNGC	2 cut(s)	300, 476
Bme1390I	CCNGG	4 cut(s)	17, 76, 144, 335
Bme18I	GGWCC	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	312, 331
BmiI	GGNNCC	2 cut(s)	86, 339
BmrFI	CCNGG	4 cut(s)	17, 76, 144, 335
BmsI	GCATC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	74, 177
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 81, 94
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	17, 76, 335
BseCI	ATCGAT	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	74, 177
BseGI	GGATG	3 cut(s)	112, 178, 212
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	3 cut(s)	80, 81, 94
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	4 cut(s)	5, 15, 142, 333
BshVI	ATCGAT	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	143, 432
BslFI	GGGAC	2 cut(s)	230, 500
BslI	CCNNNNNNNGG	3 cut(s)	80, 81, 94
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	230, 500
BsnI	GGCC	4 cut(s)	5, 15, 142, 333
BsoBI	CYCGRG	1 cut(s)	382
Bsp143I	GATC	5 cut(s)	84, 133, 160, 316, 337
BspACI	CCGC	5 cut(s)	131, 279, 298, 354, 435
BspANI	GGCC	4 cut(s)	5, 15, 142, 333
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	86, 339
BspPI	GGATC	6 cut(s)	79, 92, 141, 168, 332, 345
BsrDI	GCAATG	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	74, 177
BssMI	GATC	5 cut(s)	84, 133, 160, 316, 337
BssNI	GRCGYC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	17, 76, 335
Bst4CI	ACNGT	3 cut(s)	200, 467, 491
BstACI	GRCGYC	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	112, 178, 212
BstKTI	GATC	5 cut(s)	87, 136, 163, 319, 340
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	5 cut(s)	84, 133, 160, 316, 337
BstMCI	CGRYCG	1 cut(s)	283
BstNI	CCWGG	3 cut(s)	17, 76, 335
BstSCI	CCNGG	4 cut(s)	15, 74, 142, 333
BstV1I	GCAGC	1 cut(s)	461
BstX2I	RGATCY	4 cut(s)	84, 133, 160, 337
BstYI	RGATCY	4 cut(s)	84, 133, 160, 337
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	4 cut(s)	5, 15, 142, 333
BsuTUI	ATCGAT	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	112, 178, 212
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	228, 463
Cac8I	GCNNGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	2 cut(s)	312, 331
ClaI	ATCGAT	1 cut(s)	28
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	9 cut(s)	5, 15, 23, 142, 182, 265, 301, 333, 474
CviKI_1	RGCY	9 cut(s)	5, 15, 23, 142, 182, 265, 301, 333, 474
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	5 cut(s)	86, 135, 162, 318, 339
DpnII	GATC	5 cut(s)	84, 133, 160, 316, 337
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	146, 450
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	382
EcoRII	CCWGG	3 cut(s)	15, 74, 333
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	275
FaiI	YATR	1 cut(s)	273
FaqI	GGGAC	2 cut(s)	230, 500
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	299, 475
FokI	GGATG	3 cut(s)	119, 185, 219
Fsp4HI	GCNGC	2 cut(s)	299, 475
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	299, 475
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	4 cut(s)	5, 15, 142, 333
HapII	CCGG	2 cut(s)	143, 432
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	2 cut(s)	218, 380
HpaII	CCGG	2 cut(s)	143, 432
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	362, 503
Hpy188I	TCNGA	5 cut(s)	118, 138, 151, 321, 345
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	362, 503
HpyCH4III	ACNGT	3 cut(s)	200, 467, 491
HpyCH4V	TGCA	2 cut(s)	47, 224
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	5 cut(s)	84, 133, 160, 316, 337
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	67, 491
MalI	GATC	5 cut(s)	86, 135, 162, 318, 339
MboI	GATC	5 cut(s)	84, 133, 160, 316, 337
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	4 cut(s)	84, 133, 160, 337
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	132, 258, 351, 402, 431, 436
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	143, 432
MspR9I	CCNGG	4 cut(s)	17, 76, 144, 335
MvaI	CCWGG	3 cut(s)	17, 76, 335
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	84, 133, 160, 316, 337
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	86, 339
NmuCI	GTSAC	2 cut(s)	67, 491
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	300, 476
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	15, 74, 333
PspGI	CCWGG	3 cut(s)	15, 74, 333
PspN4I	GGNNCC	2 cut(s)	86, 339
PspPI	GGNCC	2 cut(s)	312, 331
PsuI	RGATCY	4 cut(s)	84, 133, 160, 337
SatI	GCNGC	2 cut(s)	299, 475
Sau3AI	GATC	5 cut(s)	84, 133, 160, 316, 337
Sau96I	GGNCC	2 cut(s)	312, 331
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	4 cut(s)	17, 76, 144, 335
SetI	ASST	2 cut(s)	413, 447
SfaNI	GCATC	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SsiI	CCGC	5 cut(s)	131, 279, 298, 354, 435
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	4 cut(s)	15, 74, 142, 333
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	200, 467, 491
TaqI	TCGA	2 cut(s)	28, 283
TaqII	GACCGA	1 cut(s)	329
TauI	GCSGC	1 cut(s)	301
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	2 cut(s)	235, 463
TseFI	GTSAC	2 cut(s)	67, 491
TseI	GCWGC	1 cut(s)	474
Tsp45I	GTSAC	2 cut(s)	67, 491
TspRI	CASTG	2 cut(s)	235, 463
VpaK11BI	GGWCC	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.