Rh3BG255300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001119
Physical Location & Seq
Forward (+)
24702244 .. 24702567
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG255300.1

Sequence Viewer

Length: 324 bp
ATGGCTACTGCTAGCCTTGTGGCTAATTGTTTCTTTCTTCTTATTGCGTTCGTCTGGTTATTGGGAGCGCCGCCTTCGATTTGGTTCCCGGTGGTTGTTTGGGATGGCAAGTCTGCTGTTCTGGTGGTATCAATGGGGCCGTGCTCTGACAGTGTGGTTATGAGTTGGTCTGTATCGGATCGAAACAACTGGTTCACAGATCGGAGTTGTTCGGTGGTTTCTCAGAGATGGCTGGGTGTATCAGAGATGGTTGGTTTCTCAGAGATAGCAACGTTGGCACTGGTGGCTCGCTGCAGCGTCGAACTGTCGCCGGAGTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.59

Weight (kDa)

4.51

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AclI AACGTT 1 cut(s) 272
AclWI GGATC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 317
Alw21I GWGCWC 1 cut(s) 146
AlwI GGATC 1 cut(s) 186
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 2 cut(s) 291, 294
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 89
AsuNHI GCTAGC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 278, 306
BccI CCATC 3 cut(s) 98, 222, 241
BceAI ACGGC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 292
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 3 cut(s) 71, 292, 295
BlsI GCNGC 3 cut(s) 72, 293, 296
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 86, 138
BmrFI CCNGG 1 cut(s) 89
BmtI GCTAGC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 194, 285
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 236, 273
BseNI ACTGG 2 cut(s) 194, 285
BseXI GCAGC 2 cut(s) 278, 306
BseYI CCCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 89, 311
BslI CCNNNNNNNGG 1 cut(s) 317
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 178, 199
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 235, 272
BspLI GGNNCC 2 cut(s) 86, 138
BspMAI CTGCAG 1 cut(s) 296
BspOI GCTAGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 194, 285
BssMI GATC 2 cut(s) 178, 199
Bst4CI ACNGT 2 cut(s) 152, 306
BstC8I GCNNGC 2 cut(s) 13, 289
BstDEI CTNAG 2 cut(s) 222, 259
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 2 cut(s) 181, 202
BstMBI GATC 2 cut(s) 178, 199
BstMWI GCNNNNNNNGC 2 cut(s) 275, 284
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 278, 306
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 157, 278
Cac8I GCNNGC 2 cut(s) 13, 289
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 286
CviJI RGCY 6 cut(s) 5, 15, 23, 139, 232, 287
CviKI_1 RGCY 6 cut(s) 5, 15, 23, 139, 232, 287
DdeI CTNAG 2 cut(s) 222, 259
DpnI GATC 2 cut(s) 180, 201
DpnII GATC 2 cut(s) 178, 199
FaiI YATR 1 cut(s) 161
Fnu4HI GCNGC 3 cut(s) 71, 292, 295
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 71, 292, 295
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 71, 292, 295
GsaI CCCAGC 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 1 cut(s) 139
HapII CCGG 2 cut(s) 89, 311
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 70
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 2 cut(s) 89, 311
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 6 cut(s) 148, 178, 204, 225, 244, 262
Hpy8I GTNNAC 1 cut(s) 195
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 152, 306
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 284
HpyF3I CTNAG 2 cut(s) 222, 259
HpySE526I ACGT 1 cut(s) 272
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 2 cut(s) 178, 199
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 40, 102, 107, 175, 218, 266
Lsp1109I GCAGC 2 cut(s) 278, 306
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 272
MalI GATC 2 cut(s) 180, 201
MboI GATC 2 cut(s) 178, 199
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 25
MseI TTAA 1 cut(s) 322
MspI CCGG 2 cut(s) 89, 311
MspR9I CCNGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 275, 284
NciI CCSGG 1 cut(s) 89
NdeII GATC 2 cut(s) 178, 199
NheI GCTAGC 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 86, 138
PkrI GCNGC 3 cut(s) 72, 293, 296
Psp1406I AACGTT 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 232
PspN4I GGNNCC 2 cut(s) 86, 138
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 3 cut(s) 71, 292, 295
Sau3AI GATC 2 cut(s) 178, 199
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 146
SetI ASST 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 292
Sse9I AATT 1 cut(s) 25
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 152, 306
TaiI ACGT 1 cut(s) 275
TaqI TCGA 3 cut(s) 77, 181, 300
TasI AATT 1 cut(s) 25
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 2 cut(s) 157, 285
TseI GCWGC 2 cut(s) 291, 294
TspRI CASTG 2 cut(s) 157, 285
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.