Rh4DG195400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001119
Physical Location & Seq
Reverse (-)
38155986 .. 38156285
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG195400.1

Sequence Viewer

Length: 300 bp
ATGGCCATTACTCGCCTTGTGGCATATTGTTTCTTGCTTCTTCTTGCCTTCATACTATTGCTTGGAGCGCCGCCTTGGTTTTGGTTCCTAGTGGTTGTTGTCTGGGACGAAAGCTATGGTTTTCTGGTAGCGTCTCTGTGGCCGAGCTCTGACAGCGAGGATCTGAGTTGGTCTGTATCGGATCTTTACGACTGGGTCTTGGATCGAAGTCGTCCGGCTGGCCTCTTTGCGGTGGTTCGGTATTGTAGTAGGGCGGACATGGCCGTTGATTTGGATGACAGATGTTCGGGTTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.28

Weight (kDa)

4.14

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 71, 230, 254
AclWI GGATC 3 cut(s) 168, 189, 210
AcoI YGGCCR 3 cut(s) 3, 140, 261
AfiI CCNNNNNNNGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 114, 147
AluI AGCT 2 cut(s) 114, 147
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 168, 189, 210
AoxI GGCC 4 cut(s) 3, 140, 220, 261
AspLEI GCGC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 86
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 197
BshFI GGCC 4 cut(s) 5, 142, 222, 263
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 4 cut(s) 5, 142, 222, 263
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 160, 181, 202
BspACI CCGC 3 cut(s) 71, 230, 254
BspANI GGCC 4 cut(s) 5, 142, 222, 263
BspCNI CTCAG 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 3 cut(s) 168, 189, 210
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 160, 181, 202
BssT1I CCWWGG 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 163, 184, 205
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 3 cut(s) 160, 181, 202
BstMWI GCNNNNNNNGC 3 cut(s) 67, 153, 260
BstX2I RGATCY 2 cut(s) 160, 181
BstYI RGATCY 2 cut(s) 160, 181
BsuRI GGCC 4 cut(s) 5, 142, 222, 263
BtsCI GGATG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 1 cut(s) 70
CseI GACGC 1 cut(s) 120
CviAII CATG 1 cut(s) 259
CviJI RGCY 7 cut(s) 5, 114, 142, 147, 218, 222, 263
CviKI_1 RGCY 7 cut(s) 5, 114, 142, 147, 218, 222, 263
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 162, 183, 204
DpnII GATC 3 cut(s) 160, 181, 202
EaeI YGGCCR 3 cut(s) 3, 140, 261
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 25, 53, 117, 260
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 4 cut(s) 5, 142, 222, 263
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 70
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HpaII CCGG 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 151, 165, 181
HpyAV CCTTC 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 153, 260
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 68
Kzo9I GATC 3 cut(s) 160, 181, 202
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 5 cut(s) 88, 110, 178, 204, 228
MaeI CTAG 1 cut(s) 89
MalI GATC 3 cut(s) 162, 183, 204
MboI GATC 3 cut(s) 160, 181, 202
MboII GAAGA 1 cut(s) 32
MflI RGATCY 2 cut(s) 160, 181
MhlI GDGCHC 1 cut(s) 149
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 151, 233
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 298
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 67, 153, 260
NdeII GATC 3 cut(s) 160, 181, 202
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 1 cut(s) 86
NmeAIII GCCGAG 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 149
PspN4I GGNNCC 1 cut(s) 86
PsuI RGATCY 2 cut(s) 160, 181
PsyI GACNNNGTC 1 cut(s) 194
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 3 cut(s) 160, 181, 202
SduI GDGCHC 1 cut(s) 149
SetI ASST 2 cut(s) 116, 149
SsiI CCGC 3 cut(s) 71, 230, 254
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 149
StyI CCWWGG 1 cut(s) 74
TaqI TCGA 1 cut(s) 205
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 194
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.