Rh1DG076600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001119
Physical Location & Seq
Reverse (-)
14128619 .. 14129311
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG076600.1

Sequence Viewer

Length: 693 bp
ATGGCCATGGCCATTGCTCGCCTTGTGGTTTATTGTTTCTTGCTTCTGCTTGCCTTCGTACTGTTGCTTGGAGCGCTGCCTTGGTTTTGGTTCCCAGCTGTTGTTATCTGGGACGGAAGCTATGGTTTTCTGGTAGCTTCTCTGAGGCCGAGCTCTGACAGCAAAGATCTGAGTTGGTCTATATCGGATCGTTACGACTGGGTCTTGGATTGGAGTCGTCCGGCTGGCCTCTTTGTGGTGGTTAGGTGTTGTAGTAGGGCGAACATGGCCGTTGATTTGGATGACAGATGTTCAGGTTTCACTCAAGATTTTTCTGGTTCTGGTTTGAAGGACATGGTGGATGATCGCAAGGGTCGCACTGATGTTAGACAGGGTGGTTCGCTGCAACGTCGAAGAGTTACCGACATTGGATTGGCCTGGCTGGCTAAGGTGACCGATCTAACCTTGGTTGATGTGATGGTGGCGTTCTCTACTAGTTGCCAGATCAAGGCACTCTGGTTCCCGGATGCTGGTGGAGCAGGTTGCGTTGGCGACGGTGGTGGACTCTTCGATGGCAGCTGGACGGAGGCTGTGGATGATGGAGGCTGGTCATGGTGGGTGGCTTGGGCCTCCATATGGGTTTGTTTCTTTTGGTTAGGGTTCCTAGTGGGCTGTTTTGATTTGTGTTGGTGGGCGTGGTTCTCGGCCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.65

Weight (kDa)

4.65

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 509
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 3 cut(s) 3, 9, 267
AfaI GTAC 1 cut(s) 60
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 4 cut(s) 235, 487, 509, 615
AgsI TTSAA 1 cut(s) 328
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 5 cut(s) 98, 120, 137, 153, 558
AluI AGCT 5 cut(s) 98, 120, 137, 153, 558
Alw21I GWGCWC 1 cut(s) 155
AlwI GGATC 1 cut(s) 195
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 8 cut(s) 3, 9, 146, 226, 267, 414, 606, 684
ApeKI GCWGC 3 cut(s) 76, 382, 555
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 606, 685
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 442
BalI TGGCCA 2 cut(s) 5, 11
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 3 cut(s) 63, 369, 567
BccI CCATC 3 cut(s) 451, 545, 572
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 418
BcnI CCSGG 1 cut(s) 503
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 2 cut(s) 474, 644
BfoI RGCGCY 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 509
BglI GCCNNNNNGGC 1 cut(s) 422
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 77, 383, 556
BlsI GCNGC 3 cut(s) 78, 384, 557
Bme1390I CCNGG 2 cut(s) 418, 503
BmgT120I GGNCC 2 cut(s) 606, 685
BmiI GGNNCC 3 cut(s) 92, 500, 641
BmrFI CCNGG 2 cut(s) 418, 503
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 496
BmuI ACTGGG 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 6, 80, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 235, 487, 509, 615
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 6, 80, 444
BseGI GGATG 4 cut(s) 286, 346, 511, 580
BseLI CCNNNNNNNGG 4 cut(s) 235, 487, 509, 615
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 134, 161
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 63, 369, 567
BseYI CCCAGC 1 cut(s) 94
BshFI GGCC 8 cut(s) 5, 11, 148, 228, 269, 416, 608, 686
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 2 cut(s) 221, 503
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 4 cut(s) 235, 487, 509, 615
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 8 cut(s) 5, 11, 148, 228, 269, 416, 608, 686
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 5 cut(s) 166, 187, 343, 436, 483
Bsp19I CCATGG 1 cut(s) 6
BspANI GGCC 8 cut(s) 5, 11, 148, 228, 269, 416, 608, 686
BspCNI CTCAG 2 cut(s) 135, 162
BspLI GGNNCC 3 cut(s) 92, 500, 641
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 6, 80, 444
BssMI GATC 5 cut(s) 166, 187, 343, 436, 483
BssT1I CCWWGG 3 cut(s) 6, 80, 444
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 63, 536
Bst6I CTCTTC 2 cut(s) 388, 551
BstC8I GCNNGC 4 cut(s) 19, 51, 226, 423
BstDEI CTNAG 3 cut(s) 143, 170, 426
BstDSI CCRYGG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 4 cut(s) 286, 346, 511, 580
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 5 cut(s) 169, 190, 346, 439, 486
BstMBI GATC 5 cut(s) 166, 187, 343, 436, 483
BstMWI GCNNNNNNNGC 6 cut(s) 73, 159, 266, 354, 422, 515
BstNI CCWGG 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 416, 501
BstV1I GCAGC 3 cut(s) 63, 369, 567
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 8 cut(s) 5, 11, 148, 228, 269, 416, 608, 686
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 4 cut(s) 286, 346, 511, 580
BtsIMutI CAGTG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 19, 51, 226, 423
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 606, 685
Csp6I GTAC 1 cut(s) 59
CviAII CATG 4 cut(s) 7, 265, 334, 591
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 3 cut(s) 143, 170, 426
DpnI GATC 5 cut(s) 168, 189, 345, 438, 485
DpnII GATC 5 cut(s) 166, 187, 343, 436, 483
EaeI YGGCCR 3 cut(s) 3, 9, 267
Eam1104I CTCTTC 2 cut(s) 388, 551
EarI CTCTTC 2 cut(s) 388, 551
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 3 cut(s) 6, 80, 444
Eco24I GRGCYC 1 cut(s) 155
Eco47III AGCGCT 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 153
Eco91I GGTNACC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 153
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 3 cut(s) 6, 80, 444
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 3 cut(s) 6, 80, 444
FaeI CATG 4 cut(s) 10, 268, 337, 594
FaiI YATR 8 cut(s) 8, 123, 182, 266, 335, 592, 614, 616
FaqI GGGAC 1 cut(s) 125
FatI CATG 4 cut(s) 6, 264, 333, 590
FauNDI CATATG 1 cut(s) 614
Fnu4HI GCNGC 3 cut(s) 77, 383, 556
FokI GGATG 4 cut(s) 293, 353, 518, 587
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 3 cut(s) 77, 383, 556
FspBI CTAG 2 cut(s) 474, 644
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 77, 383, 556
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 8 cut(s) 5, 11, 148, 228, 269, 416, 608, 686
HapII CCGG 2 cut(s) 221, 503
HhaI GCGC 1 cut(s) 76
Hin1II CATG 4 cut(s) 10, 268, 337, 594
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 214, 543
HpaII CCGG 2 cut(s) 221, 503
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 4 cut(s) 144, 157, 171, 187
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 542
Hpy99I CGWCG 2 cut(s) 393, 536
HpyAV CCTTC 2 cut(s) 64, 322
HpyCH4III ACNGT 2 cut(s) 63, 536
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 6 cut(s) 73, 159, 266, 354, 422, 515
HpyF3I CTNAG 3 cut(s) 143, 170, 426
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 4 cut(s) 10, 268, 337, 594
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 5 cut(s) 166, 187, 343, 436, 483
LmnI GCTCC 2 cut(s) 71, 515
Lsp1109I GCAGC 3 cut(s) 63, 369, 567
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 474, 644
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 191, 397, 430
MalI GATC 5 cut(s) 168, 189, 345, 438, 485
MboI GATC 5 cut(s) 166, 187, 343, 436, 483
MboII GAAGA 2 cut(s) 405, 538
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 155
MlsI TGGCCA 2 cut(s) 5, 11
MluNI TGGCCA 2 cut(s) 5, 11
MlyI GAGTC 2 cut(s) 223, 537
MnlI CCTC 5 cut(s) 138, 239, 559, 575, 619
Mox20I TGGCCA 2 cut(s) 5, 11
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 2 cut(s) 98, 558
MspI CCGG 2 cut(s) 221, 503
MspR9I CCNGG 2 cut(s) 418, 503
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 6 cut(s) 73, 159, 266, 354, 422, 515
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 1 cut(s) 614
NdeII GATC 5 cut(s) 166, 187, 343, 436, 483
NlaIII CATG 4 cut(s) 10, 268, 337, 594
NlaIV GGNNCC 3 cut(s) 92, 500, 641
NmeAIII GCCGAG 2 cut(s) 174, 662
NmuCI GTSAC 1 cut(s) 430
PflFI GACNNNGTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 501
PkrI GCNGC 3 cut(s) 78, 384, 557
PleI GAGTC 2 cut(s) 222, 537
PpsI GAGTC 2 cut(s) 222, 537
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 3 cut(s) 92, 500, 641
PspPI GGNCC 2 cut(s) 606, 685
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 2 cut(s) 98, 558
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 155
SatI GCNGC 3 cut(s) 77, 383, 556
Sau3AI GATC 5 cut(s) 166, 187, 343, 436, 483
Sau96I GGNCC 2 cut(s) 606, 685
SchI GAGTC 2 cut(s) 223, 537
ScrFI CCNGG 2 cut(s) 418, 503
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
SpeI ACTAGT 1 cut(s) 473
SspMI CTAG 2 cut(s) 474, 644
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 416, 501
StyI CCWWGG 3 cut(s) 6, 80, 444
TaaI ACNGT 2 cut(s) 63, 536
TaiI ACGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 391, 549
TaqII GACCGA 1 cut(s) 449
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 3 cut(s) 76, 382, 555
Tsp45I GTSAC 1 cut(s) 430
TspGWI ACGGA 2 cut(s) 129, 578
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 200
XspI CTAG 2 cut(s) 474, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.