Rh6CG442000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001119
Physical Location & Seq
Forward (+)
62125888 .. 62126929
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG442000.1

Sequence Viewer

Length: 873 bp
ATGGCTGGTGCCACAAATGGGATCGCAGCGCTGTCCTTTCCCGGCGTGGTTTACGTCAACCGGGGGCGTGCCAGTGCTCATTTTTTTTTTCTAGTTTTCCTTCTCTTTATACTTGCTGGTTGCAGCGTGATGGATTCGAATTTGCTTTTGGTTCCTGCTGGGAGGATCGACGGAGGTGCCATCGATCCTTGGCGGTGGAGGGGGTTCCGGCTATCAGGGTCTAGCATCGTCGATATTGGAGGCGTGGATGCTAGTGTCAGTGCTTGGGTTGGTTGCGGGGCCGCAGGTGGGCAAGGGATCGATCGTGGCTGGTTCGTTGATGGCCTGAATTCCAACATAGCCCAGCTGATGGAATCTGAAGCCTTGAGATGCCGAAGTTTCCAGACGACTAGGGTGGACATGGTCGTTGATTTGGATGACAGATGGTCGGGTTTCAAGCCAGATTTTGCTGGTTCTGGTTTGAAGGACGGGGTGGATGATTGCAATGGTCGTACTGATGTTAGACATGGAGGTTCGCTGCAATGTCGAAGAGTTGCCGGCGTTGGGTTGGCCTGGCTAGATCAGGTGACCGATCTAAGCTTGGTTGATGTGATGGTGGCGTTCTCTACTGGCTGCCAGATCCAGGCATTCTGGCTCCCGTATGCTGGTGGAGCAGGTGACGTTGGTGGCGGCGGTGGATTTTTCGATGGCAGCTGGACGGAGGCTGTAGACGATGGAGGCTGGTCTTGGTGGGTGGTTTGGGCCTCCATGTGGACCTACTTCTTTGGGGAAGGGCTTCTGGTGGGCGTGGTTATCGGCCTTTTAGCAATGTGGCATTTTGATTGTCCTATGTTTGGTCATGATTCCTCTTTTCAAGGTGGAGGGTATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

30.9

Weight (kDa)

4.51

Isoelectric Point (pI)

22.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 275, 644
Acc36I ACCTGC 2 cut(s) 275, 644
AccB1I GGYRCC 2 cut(s) 8, 176
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 708
AciI CCGC 5 cut(s) 193, 276, 282, 669, 672
AclWI GGATC 5 cut(s) 29, 173, 179, 305, 613
AcsI RAATTY 2 cut(s) 139, 328
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 493
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 8 cut(s) 18, 288, 349, 543, 622, 644, 750, 833
AgsI TTSAA 3 cut(s) 436, 463, 854
AhdI GACNNNNNGTC 1 cut(s) 424
AjnI CCWGG 2 cut(s) 551, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 3 cut(s) 346, 579, 693
AluI AGCT 3 cut(s) 346, 579, 693
Alw21I GWGCWC 1 cut(s) 79
AlwI GGATC 5 cut(s) 29, 173, 179, 305, 613
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 5 cut(s) 279, 322, 549, 741, 796
ApeKI GCWGC 5 cut(s) 26, 123, 517, 612, 690
ApoI RAATTY 2 cut(s) 139, 328
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 279, 741, 753
AsuC2I CCSGG 2 cut(s) 42, 62
AsuHPI GGTGA 2 cut(s) 577, 668
AsuII TTCGAA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 753
BanI GGYRCC 2 cut(s) 8, 176
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 5 cut(s) 38, 135, 504, 599, 702
BccI CCATC 8 cut(s) 124, 188, 314, 343, 417, 586, 680, 707
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciT130I CCWGG 2 cut(s) 553, 623
BcnI CCSGG 2 cut(s) 42, 62
BfaI CTAG 6 cut(s) 92, 222, 252, 390, 557, 871
BfmI CTRYAG 1 cut(s) 705
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 275, 644
BisI GCNGC 7 cut(s) 27, 124, 282, 518, 613, 670, 691
BlsI GCNGC 7 cut(s) 28, 125, 283, 519, 614, 671, 692
Bme1390I CCNGG 4 cut(s) 42, 62, 553, 623
Bme18I GGWCC 1 cut(s) 753
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 279, 741, 753
BmiI GGNNCC 6 cut(s) 10, 153, 178, 206, 280, 635
BmrFI CCNGG 4 cut(s) 42, 62, 553, 623
BmsI GCATC 3 cut(s) 234, 238, 359
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 385
BpuMI CCSGG 2 cut(s) 42, 62
Bsa29I ATCGAT 2 cut(s) 183, 300
BsaJI CCNNGG 2 cut(s) 61, 188
Bsc4I CCNNNNNNNGG 8 cut(s) 18, 288, 349, 543, 622, 644, 750, 833
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 2 cut(s) 72, 613
Bse3DI GCAATG 3 cut(s) 490, 527, 813
BseBI CCWGG 2 cut(s) 553, 623
BseCI ATCGAT 2 cut(s) 183, 300
BseDI CCNNGG 2 cut(s) 61, 188
BseGI GGATG 3 cut(s) 253, 421, 481
BseLI CCNNNNNNNGG 8 cut(s) 18, 288, 349, 543, 622, 644, 750, 833
BseMI GCAATG 3 cut(s) 490, 527, 813
BseNI ACTGG 2 cut(s) 72, 613
BseXI GCAGC 5 cut(s) 38, 135, 504, 599, 702
BseYI CCCAGC 2 cut(s) 158, 342
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 5 cut(s) 281, 324, 551, 743, 798
BshNI GGYRCC 2 cut(s) 8, 176
BshVI ATCGAT 2 cut(s) 183, 300
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 4 cut(s) 42, 61, 208, 537
BslI CCNNNNNNNGG 8 cut(s) 18, 288, 349, 543, 622, 644, 750, 833
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 5 cut(s) 281, 324, 551, 743, 798
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
BspACI CCGC 5 cut(s) 193, 276, 282, 669, 672
BspANI GGCC 5 cut(s) 281, 324, 551, 743, 798
BspDI ATCGAT 2 cut(s) 183, 300
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 6 cut(s) 10, 153, 178, 206, 280, 635
BspMI ACCTGC 2 cut(s) 275, 644
BspPI GGATC 5 cut(s) 29, 173, 179, 305, 613
BspT104I TTCGAA 1 cut(s) 137
BspT107I GGYRCC 2 cut(s) 8, 176
BsrDI GCAATG 3 cut(s) 490, 527, 813
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 2 cut(s) 72, 613
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 2 cut(s) 61, 188
BssMI GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 553, 623
Bst6I CTCTTC 1 cut(s) 523
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 69, 538
BstDEI CTNAG 1 cut(s) 575
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 3 cut(s) 253, 421, 481
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 8 cut(s) 24, 168, 187, 300, 304, 562, 574, 621
BstMBI GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 650
BstNI CCWGG 2 cut(s) 553, 623
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 4 cut(s) 40, 60, 551, 621
BstSFI CTRYAG 1 cut(s) 705
BstV1I GCAGC 5 cut(s) 38, 135, 504, 599, 702
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
Bsu15I ATCGAT 2 cut(s) 183, 300
BsuRI GGCC 5 cut(s) 281, 324, 551, 743, 798
BsuTUI ATCGAT 2 cut(s) 183, 300
BtsCI GGATG 3 cut(s) 253, 421, 481
BtsIMutI CAGTG 2 cut(s) 79, 265
BveI ACCTGC 2 cut(s) 275, 644
Cac8I GCNNGC 2 cut(s) 69, 538
CciI TCATGA 1 cut(s) 838
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 3 cut(s) 279, 741, 753
ClaI ATCGAT 2 cut(s) 183, 300
Csp6I GTAC 1 cut(s) 492
CviAII CATG 4 cut(s) 400, 506, 748, 839
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 1 cut(s) 575
DpnI GATC 8 cut(s) 23, 167, 186, 299, 303, 561, 573, 620
DpnII GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
DriI GACNNNNNGTC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 523
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 753
Eco47III AGCGCT 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 551, 621
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 4 cut(s) 403, 509, 751, 842
FaiI YATR 9 cut(s) 110, 338, 401, 507, 642, 749, 830, 840, 867
FatI CATG 4 cut(s) 399, 505, 747, 838
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 7 cut(s) 27, 124, 282, 518, 613, 670, 691
FokI GGATG 3 cut(s) 260, 428, 488
Fsp4HI GCNGC 7 cut(s) 27, 124, 282, 518, 613, 670, 691
FspBI CTAG 6 cut(s) 92, 222, 252, 390, 557, 871
GlaI GCGC 1 cut(s) 30
GluI GCNGC 7 cut(s) 27, 124, 282, 518, 613, 670, 691
GsaI CCCAGC 2 cut(s) 162, 346
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 5 cut(s) 281, 324, 551, 743, 798
HapII CCGG 4 cut(s) 42, 61, 208, 537
HhaI GCGC 1 cut(s) 31
Hin1II CATG 4 cut(s) 403, 509, 751, 842
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 3 cut(s) 134, 353, 842
HpaII CCGG 4 cut(s) 42, 61, 208, 537
HphI GGTGA 2 cut(s) 577, 668
Hpy166II GTNNAC 5 cut(s) 52, 58, 397, 709, 753
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 382, 839
Hpy8I GTNNAC 5 cut(s) 52, 58, 397, 709, 753
Hpy99I CGWCG 2 cut(s) 173, 233
HpyAV CCTTC 3 cut(s) 110, 457, 764
HpyCH4IV ACGT 2 cut(s) 54, 660
HpyCH4V TGCA 3 cut(s) 123, 483, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 650
HpyF3I CTNAG 1 cut(s) 575
HpySE526I ACGT 2 cut(s) 54, 660
Hsp92II CATG 4 cut(s) 403, 509, 751, 842
HspAI GCGC 1 cut(s) 29
KroI GCCGGC 1 cut(s) 536
KroNI GCCGGC 1 cut(s) 538
Kzo9I GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
LmnI GCTCC 2 cut(s) 639, 650
Lsp1109I GCAGC 5 cut(s) 38, 135, 504, 599, 702
LweI GCATC 3 cut(s) 234, 238, 359
MaeI CTAG 6 cut(s) 92, 222, 252, 390, 557, 871
MaeII ACGT 2 cut(s) 54, 660
MaeIII GTNAC 2 cut(s) 565, 656
MalI GATC 8 cut(s) 23, 167, 186, 299, 303, 561, 573, 620
MboI GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
MboII GAAGA 1 cut(s) 540
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 139, 328
MmeI TCCRAC 1 cut(s) 357
MroNI GCCGGC 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 346, 693
MspI CCGG 4 cut(s) 42, 61, 208, 537
MspR9I CCNGG 4 cut(s) 42, 62, 553, 623
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 2 cut(s) 553, 623
MwoI GCNNNNNNNGC 1 cut(s) 650
NaeI GCCGGC 1 cut(s) 538
NciI CCSGG 2 cut(s) 42, 62
NdeII GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
NgoMIV GCCGGC 1 cut(s) 536
NlaIII CATG 4 cut(s) 403, 509, 751, 842
NlaIV GGNNCC 6 cut(s) 10, 153, 178, 206, 280, 635
NmuCI GTSAC 2 cut(s) 565, 656
NspV TTCGAA 1 cut(s) 137
PagI TCATGA 1 cut(s) 838
PaqCI CACCTGC 2 cut(s) 275, 644
PctI GAATGC 1 cut(s) 626
PdiI GCCGGC 1 cut(s) 538
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 3 cut(s) 134, 353, 842
PflFI GACNNNGTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 7 cut(s) 28, 125, 283, 519, 614, 671, 692
Ple19I CGATCG 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 551, 621
PspEI GGTNACC 1 cut(s) 565
PspFI CCCAGC 2 cut(s) 158, 342
PspGI CCWGG 2 cut(s) 551, 621
PspN4I GGNNCC 6 cut(s) 10, 153, 178, 206, 280, 635
PspPI GGNCC 3 cut(s) 279, 741, 753
PsuI RGATCY 1 cut(s) 618
PsyI GACNNNGTC 1 cut(s) 401
PvuI CGATCG 1 cut(s) 304
PvuII CAGCTG 2 cut(s) 346, 693
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SatI GCNGC 7 cut(s) 27, 124, 282, 518, 613, 670, 691
Sau3AI GATC 8 cut(s) 21, 165, 184, 297, 301, 559, 571, 618
Sau96I GGNCC 3 cut(s) 279, 741, 753
ScrFI CCNGG 4 cut(s) 42, 62, 553, 623
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 3 cut(s) 234, 238, 359
SfcI CTRYAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 137
SinI GGWCC 1 cut(s) 753
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 2 cut(s) 139, 328
SsiI CCGC 5 cut(s) 193, 276, 282, 669, 672
SspMI CTAG 6 cut(s) 92, 222, 252, 390, 557, 871
StyD4I CCNGG 4 cut(s) 40, 60, 551, 621
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 2 cut(s) 57, 663
TaqI TCGA 7 cut(s) 137, 168, 183, 231, 300, 526, 684
TaqII GACCGA 1 cut(s) 584
TasI AATT 2 cut(s) 139, 328
TauI GCSGC 2 cut(s) 284, 672
TfiI GAWTC 3 cut(s) 134, 353, 842
TscAI CASTG 2 cut(s) 79, 265
TseFI GTSAC 2 cut(s) 565, 656
TseI GCWGC 5 cut(s) 26, 123, 517, 612, 690
Tsp45I GTSAC 2 cut(s) 565, 656
TspGWI ACGGA 2 cut(s) 186, 713
TspRI CASTG 2 cut(s) 79, 265
Tth111I GACNNNGTC 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 753
XapI RAATTY 2 cut(s) 139, 328
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 6 cut(s) 92, 222, 252, 390, 557, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.