RLG00000005330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001119
Physical Location & Seq
Reverse (-)
66840784 .. 66841571
788 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005330

Sequence Viewer

Length: 450 bp
ATGGCCATGGCCATTGCCAGCCTTGTGGCCGATTGTTTATTGTTTCTTATTACTTTCGTACTGTTGCTAGGAGTGCTGCCTTGGATTTGGTTCCCAGCGGTTGCTGGCTGGGACGGCTGTCATGGTGTTCTGGTGGCTTCTCTGAGACCGCGCTTTGACATAGCGGCGGACATGGTCATGGTTGATTTGAATGACAGTTTTTCGGTTTCAAGCCAGAGTTTGCTTTTTCTAGATCGAAGGAAATGGTGGATGATCGCAATGTTCGCACTGATGTTCGACGTGGTGGCTCGCTGCAACGTCGAAGAGATTGAGACGCTCTGGTTTTCGATTGCTGGTAGAGTAGATCGAGTTGGCGACGACGATGATTTCTTCGCCGGCGACTGGACGGAGGCTGGTCTTGGTGAAGGGCGAGACTGTGCAGATTGTGGAGGCTGCTACTGCAGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.53

Weight (kDa)

4.2

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AciI CCGC 4 cut(s) 98, 149, 164, 167
AcoI YGGCCR 3 cut(s) 3, 9, 27
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 2 cut(s) 190, 210
AjiI CACGTC 1 cut(s) 280
Alw26I GTCTC 3 cut(s) 139, 305, 405
AoxI GGCC 3 cut(s) 3, 9, 27
ApeKI GCWGC 3 cut(s) 76, 291, 432
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 413
BalI TGGCCA 2 cut(s) 5, 11
BbvI GCAGC 3 cut(s) 63, 278, 419
BceAI ACGGC 1 cut(s) 130
BcoDI GTCTC 3 cut(s) 139, 305, 405
BfaI CTAG 2 cut(s) 68, 230
BfmI CTRYAG 1 cut(s) 439
BisI GCNGC 4 cut(s) 77, 165, 292, 433
BlsI GCNGC 4 cut(s) 78, 166, 293, 434
BmgBI CACGTC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 92
BoxI GACNNNNGTC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 6, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 2 cut(s) 12, 264
BseDI CCNNGG 2 cut(s) 6, 80
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 2 cut(s) 12, 264
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 63, 278, 419
BseYI CCCAGC 2 cut(s) 94, 108
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 3 cut(s) 5, 11, 29
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 3 cut(s) 139, 305, 405
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 5, 11, 29
Bso31I GGTCTC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 232, 252, 343
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 98, 149, 164, 167
BspANI GGCC 3 cut(s) 5, 11, 29
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 2 cut(s) 12, 264
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 2 cut(s) 6, 80
BssMI GATC 3 cut(s) 232, 252, 343
BssT1I CCWWGG 2 cut(s) 6, 80
Bst4CI ACNGT 3 cut(s) 63, 197, 416
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 4 cut(s) 19, 106, 289, 376
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 3 cut(s) 235, 255, 346
BstMAI GTCTC 3 cut(s) 139, 305, 405
BstMBI GATC 3 cut(s) 232, 252, 343
BstMWI GCNNNNNNNGC 4 cut(s) 73, 114, 263, 438
BstPAI GACNNNNGTC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 439
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 63, 278, 419
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 3 cut(s) 5, 11, 29
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 4 cut(s) 19, 106, 289, 376
CfoI GCGC 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 374
CseI GACGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 59
CviAII CATG 4 cut(s) 7, 122, 172, 178
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 143
DpnI GATC 3 cut(s) 234, 254, 345
DpnII GATC 3 cut(s) 232, 252, 343
EaeI YGGCCR 3 cut(s) 3, 9, 27
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 1 cut(s) 182
Eco130I CCWWGG 2 cut(s) 6, 80
Eco31I GGTCTC 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 6, 80
ErhI CCWWGG 2 cut(s) 6, 80
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 4 cut(s) 10, 125, 175, 181
FaiI YATR 5 cut(s) 8, 123, 161, 173, 179
FaqI GGGAC 1 cut(s) 125
FatI CATG 4 cut(s) 6, 121, 171, 177
Fnu4HI GCNGC 4 cut(s) 77, 165, 292, 433
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 4 cut(s) 77, 165, 292, 433
FspBI CTAG 2 cut(s) 68, 230
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 77, 165, 292, 433
GsaI CCCAGC 2 cut(s) 98, 112
HaeIII GGCC 3 cut(s) 5, 11, 29
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 322
HhaI GCGC 1 cut(s) 153
Hin1II CATG 4 cut(s) 10, 125, 175, 181
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HpaII CCGG 1 cut(s) 375
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 230
Hpy99I CGWCG 4 cut(s) 281, 302, 359, 362
HpyAV CCTTC 2 cut(s) 231, 398
HpyCH4III ACNGT 3 cut(s) 63, 197, 416
HpyCH4IV ACGT 2 cut(s) 279, 297
HpyCH4V TGCA 3 cut(s) 294, 419, 441
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 114, 263, 438
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 279, 297
Hsp92II CATG 4 cut(s) 10, 125, 175, 181
HspAI GCGC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 232, 252, 343
Lsp1109I GCAGC 3 cut(s) 63, 278, 419
MaeI CTAG 2 cut(s) 68, 230
MaeII ACGT 2 cut(s) 279, 297
MalI GATC 3 cut(s) 234, 254, 345
MboI GATC 3 cut(s) 232, 252, 343
MboII GAAGA 2 cut(s) 314, 361
MlsI TGGCCA 2 cut(s) 5, 11
MluNI TGGCCA 2 cut(s) 5, 11
MnlI CCTC 3 cut(s) 382, 422, 437
Mox20I TGGCCA 2 cut(s) 5, 11
MreI CGCCGGCG 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 374
MscI TGGCCA 2 cut(s) 5, 11
MslI CAYNNNNRTG 1 cut(s) 176
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 4 cut(s) 73, 114, 263, 438
NaeI GCCGGC 1 cut(s) 376
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 232, 252, 343
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 4 cut(s) 10, 125, 175, 181
NlaIV GGNNCC 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 376
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 78, 166, 293, 434
PshAI GACNNNNGTC 1 cut(s) 117
PspFI CCCAGC 2 cut(s) 94, 108
PspN4I GGNNCC 1 cut(s) 92
PstI CTGCAG 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 176
SatI GCNGC 4 cut(s) 77, 165, 292, 433
Sau3AI GATC 3 cut(s) 232, 252, 343
SetI ASST 2 cut(s) 282, 300
SfcI CTRYAG 1 cut(s) 439
SgrAI CRCCGGYG 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 4 cut(s) 98, 149, 164, 167
SspMI CTAG 2 cut(s) 68, 230
StyI CCWWGG 2 cut(s) 6, 80
TaaI ACNGT 3 cut(s) 63, 197, 416
TaiI ACGT 2 cut(s) 282, 300
TaqI TCGA 5 cut(s) 235, 276, 300, 326, 346
TauI GCSGC 1 cut(s) 167
TscAI CASTG 1 cut(s) 273
TseI GCWGC 3 cut(s) 76, 291, 432
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 273
Tth111I GACNNNGTC 1 cut(s) 173
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 2 cut(s) 68, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.