RLG00000019943

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001119
Physical Location & Seq
Forward (+)
58944690 .. 58945554
865 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019943

Sequence Viewer

Length: 669 bp
ATGGCCATGGCCATTGCCAGCCTTGTGGCTGATTGTTTTTTGCTTCTTATTGTTTTTGTACTATTGCTAGGAGTACGGCCTTGGATTTGGTTTCCAGCGGTTGATGTCTGGGATGGCAGTCATGGTGTCCTGGTGGCTTCTCTGAGGCCGAGTTTTGACAGCCGGGATCTACTTTGGTTTGTATCGGTTCGAACCGTTTGGGTTTTGGATCAGAGTAGTATGGCTGGTCTCTTTGTGGTGCTTGGGTGTTGTCATAAGGCAGCCATGGTCGTTATTGATTTGGCTTCTAGTTGTTCAGGTTTCGAGCCAGAGTTTGCGGTTTCTGGATCGAAGGACATGGTGGATGTTCGCACTGCTGTTGGATGTGGTGGTTCGCTGCAACGTCGAAGAGCTGCCAGGGAGATCGATCTAGGCTTGGTTGATGTGCTGGTGGTGTCGTCCTTTACTGACAGCCAGATCGAGGTGTTCTGGTTCCCAGTAGCTGGTGGAGCAGGTCGCGTTGGCGAAGGTGGTGATCTCTTTGCTGGCGACTGGACGGAGGCTGTGGACGATGGAGTTTGGACTTGGTGGGTGGCTTGGGCCTCCAAGTGGGTTTGTTTATTTGGGCTAGGGTTCCTGGCGGATTGGATTGATTTGTGTTGGTGGGTGTGGTGGCTCTCGGCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.44

Weight (kDa)

4.38

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 482
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 1 cut(s) 498
AciI CCGC 3 cut(s) 98, 317, 620
AclWI GGATC 3 cut(s) 174, 216, 334
AcoI YGGCCR 2 cut(s) 3, 9
AfaI GTAC 2 cut(s) 60, 75
AfiI CCNNNNNNNGG 3 cut(s) 460, 482, 588
AjnI CCWGG 3 cut(s) 129, 395, 615
AluBI AGCT 2 cut(s) 392, 482
AluI AGCT 2 cut(s) 392, 482
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 3 cut(s) 174, 216, 334
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 6 cut(s) 3, 9, 77, 146, 579, 660
ApeKI GCWGC 3 cut(s) 260, 376, 392
AspS9I GGNCC 1 cut(s) 579
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 524
AsuII TTCGAA 1 cut(s) 190
BalI TGGCCA 2 cut(s) 5, 11
BbvI GCAGC 3 cut(s) 272, 363, 379
BccI CCATC 2 cut(s) 107, 545
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 3 cut(s) 131, 397, 617
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 68, 288, 410, 608
BfuAI ACCTGC 1 cut(s) 482
BisI GCNGC 3 cut(s) 261, 377, 393
BlsI GCNGC 3 cut(s) 262, 378, 394
Bme1390I CCNGG 4 cut(s) 131, 164, 397, 617
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 2 cut(s) 473, 614
BmrFI CCNGG 4 cut(s) 131, 164, 397, 617
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
Bpu14I TTCGAA 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 4 cut(s) 6, 80, 264, 396
Bsc4I CCNNNNNNNGG 3 cut(s) 460, 482, 588
Bse1I ACTGG 2 cut(s) 476, 536
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 131, 397, 617
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 4 cut(s) 6, 80, 264, 396
BseGI GGATG 3 cut(s) 118, 349, 368
BseLI CCNNNNNNNGG 3 cut(s) 460, 482, 588
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 476, 536
BseXI GCAGC 3 cut(s) 272, 363, 379
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 6 cut(s) 5, 11, 79, 148, 581, 662
BshVI ATCGAT 1 cut(s) 405
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 460, 482, 588
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 6 cut(s) 5, 11, 79, 148, 581, 662
Bso31I GGTCTC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 190
Bsp143I GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
Bsp19I CCATGG 2 cut(s) 6, 264
BspACI CCGC 3 cut(s) 98, 317, 620
BspANI GGCC 6 cut(s) 5, 11, 79, 148, 581, 662
BspCNI CTCAG 1 cut(s) 135
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 473, 614
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 3 cut(s) 174, 216, 334
BspQI GCTCTTC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 476, 536
BssECI CCNNGG 4 cut(s) 6, 80, 264, 396
BssMI GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
BssT1I CCWWGG 3 cut(s) 6, 80, 264
Bst2UI CCWGG 3 cut(s) 131, 397, 617
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 382
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 19, 526
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 2 cut(s) 6, 264
BstF5I GGATG 3 cut(s) 118, 349, 368
BstFNI CGCG 1 cut(s) 498
BstKTI GATC 7 cut(s) 169, 211, 329, 405, 409, 459, 517
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 3 cut(s) 131, 397, 617
BstSCI CCNGG 4 cut(s) 129, 162, 395, 615
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 272, 363, 379
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 6 cut(s) 5, 11, 79, 148, 581, 662
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 2 cut(s) 6, 264
BtsCI GGATG 3 cut(s) 118, 349, 368
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 2 cut(s) 19, 526
CaiI CAGNNNCTG 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 405
Csp6I GTAC 2 cut(s) 59, 74
CviAII CATG 4 cut(s) 7, 122, 265, 337
CviQI GTAC 2 cut(s) 59, 74
DdeI CTNAG 1 cut(s) 143
DpnI GATC 7 cut(s) 168, 210, 328, 404, 408, 458, 516
DpnII GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
EaeI YGGCCR 2 cut(s) 3, 9
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 635
Eco130I CCWWGG 3 cut(s) 6, 80, 264
Eco31I GGTCTC 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 129, 395, 615
EcoT14I CCWWGG 3 cut(s) 6, 80, 264
ErhI CCWWGG 3 cut(s) 6, 80, 264
FaeI CATG 4 cut(s) 10, 125, 268, 340
FaiI YATR 6 cut(s) 8, 123, 221, 255, 266, 338
FatI CATG 4 cut(s) 6, 121, 264, 336
Fnu4HI GCNGC 3 cut(s) 261, 377, 393
FokI GGATG 3 cut(s) 125, 356, 375
Fsp4HI GCNGC 3 cut(s) 261, 377, 393
FspBI CTAG 4 cut(s) 68, 288, 410, 608
GluI GCNGC 3 cut(s) 261, 377, 393
HaeIII GGCC 6 cut(s) 5, 11, 79, 148, 581, 662
HapII CCGG 1 cut(s) 163
Hin1II CATG 4 cut(s) 10, 125, 268, 340
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 2 cut(s) 144, 213
Hpy188III TCNNGA 1 cut(s) 324
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 325, 500
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 4 cut(s) 10, 125, 268, 340
Kzo9I GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 488
Lsp1109I GCAGC 3 cut(s) 272, 363, 379
MaeI CTAG 4 cut(s) 68, 288, 410, 608
MaeII ACGT 1 cut(s) 382
MalI GATC 7 cut(s) 168, 210, 328, 404, 408, 458, 516
MboI GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
MboII GAAGA 1 cut(s) 399
MflI RGATCY 1 cut(s) 166
MlsI TGGCCA 2 cut(s) 5, 11
MluNI TGGCCA 2 cut(s) 5, 11
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 4 cut(s) 138, 454, 532, 592
Mox20I TGGCCA 2 cut(s) 5, 11
MscI TGGCCA 2 cut(s) 5, 11
Msp20I TGGCCA 2 cut(s) 5, 11
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 4 cut(s) 131, 164, 397, 617
MvaI CCWGG 3 cut(s) 131, 397, 617
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 164
NcoI CCATGG 2 cut(s) 6, 264
NdeII GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
NlaIII CATG 4 cut(s) 10, 125, 268, 340
NlaIV GGNNCC 2 cut(s) 473, 614
NmeAIII GCCGAG 2 cut(s) 174, 638
NspV TTCGAA 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 3 cut(s) 262, 378, 394
Psp6I CCWGG 3 cut(s) 129, 395, 615
PspGI CCWGG 3 cut(s) 129, 395, 615
PspN4I GGNNCC 2 cut(s) 473, 614
PspPI GGNCC 1 cut(s) 579
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 2 cut(s) 60, 75
RsaNI GTAC 2 cut(s) 59, 74
SapI GCTCTTC 1 cut(s) 382
SatI GCNGC 3 cut(s) 261, 377, 393
Sau3AI GATC 7 cut(s) 166, 208, 326, 402, 406, 456, 514
Sau96I GGNCC 1 cut(s) 579
ScrFI CCNGG 4 cut(s) 131, 164, 397, 617
SetI ASST 7 cut(s) 301, 385, 394, 465, 484, 496, 511
SfuI TTCGAA 1 cut(s) 190
SsiI CCGC 3 cut(s) 98, 317, 620
SspMI CTAG 4 cut(s) 68, 288, 410, 608
StyD4I CCNGG 4 cut(s) 129, 162, 395, 615
StyI CCWWGG 3 cut(s) 6, 80, 264
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 385
TaqI TCGA 6 cut(s) 190, 303, 329, 385, 405, 459
TatI WGTACW 1 cut(s) 58
TscAI CASTG 1 cut(s) 358
TseI GCWGC 3 cut(s) 260, 376, 392
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 1 cut(s) 482
XspI CTAG 4 cut(s) 68, 288, 410, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.