Rroxscaffold_5G00347240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001119
Physical Location & Seq
Forward (+)
18544179 .. 18558050
13872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347240.1

Sequence Viewer

Length: 495 bp
ATGGACCTTAGTCCGAGGCCATCACCGCATCAAAGAGTTCGTAAGGGACATGGTAAGGGTCCGGGTTTTGAATCGTTGATGAAGGATTTAAGCTGTAGCGGAGTGAGGAAGCACTGGGAGCTTCGCCGGAAAAACGGAAAACTTCCGAGTTCACGAGTTTCGGGATATTATGATACTAAGATCTTCCAAGTAGTTAACTTCTTGAGGGATAAAAAAAAGTCCCTTCTCCGCCGTGAGTTAGGGTTTGAGTGCTCTTCTAGGGTTTGTAGTTTGACTGGTAAACAAGTGTCACTTGTATTTCTACGGCGTTGGCTTGACGCAGTGAGGTGTATGTGGTGGCTAGTTCGTTTGGTGAAGTGGGTTTGGACGGCAGTTTTGTCCTTGTTGTTGATTATGGAGGTGGTAGTGGGTGAGTTTTCTTGGCGTCGGCAATCCAGGACGACAATGACCTGGAAGTTATTACGTGGACGATCCGAGTTCGTTGATGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

19.27

Weight (kDa)

10.94

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 99, 229
AclWI GGATC 1 cut(s) 465
AcyI GRCGYC 1 cut(s) 424
AgsI TTSAA 1 cut(s) 71
AjnI CCWGG 2 cut(s) 434, 449
AluBI AGCT 2 cut(s) 93, 121
AluI AGCT 2 cut(s) 93, 121
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspS9I GGNCC 2 cut(s) 4, 59
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 15, 364, 422
AvaII GGWCC 2 cut(s) 4, 59
BauI CACGAG 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 2 cut(s) 28, 479
BceAI ACGGC 3 cut(s) 216, 320, 384
BciT130I CCWGG 2 cut(s) 436, 451
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 3 cut(s) 258, 341, 493
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 180
Bme1390I CCNGG 3 cut(s) 63, 436, 451
Bme18I GGWCC 2 cut(s) 4, 59
BmgT120I GGNCC 2 cut(s) 4, 59
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 63, 436, 451
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 37
BmuI ACTGGG 1 cut(s) 124
BoxI GACNNNNGTC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 14
Bse1I ACTGG 2 cut(s) 119, 280
BseBI CCWGG 2 cut(s) 436, 451
BseDI CCNNGG 1 cut(s) 14
BseNI ACTGG 2 cut(s) 119, 280
BshFI GGCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 2 cut(s) 62, 127
BslFI GGGAC 2 cut(s) 60, 205
BsmFI GGGAC 2 cut(s) 60, 205
BsnI GGCC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 180, 470
BspACI CCGC 3 cut(s) 26, 99, 229
BspANI GGCC 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 465
BspQI GCTCTTC 1 cut(s) 259
BsrI ACTGG 2 cut(s) 119, 280
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 2 cut(s) 180, 470
BssNI GRCGYC 1 cut(s) 424
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 436, 451
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 424
BstBAI YACGTR 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 8, 177
BstKTI GATC 2 cut(s) 183, 473
BstMBI GATC 2 cut(s) 180, 470
BstMWI GCNNNNNNNGC 2 cut(s) 25, 118
BstNI CCWGG 2 cut(s) 436, 451
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 3 cut(s) 61, 434, 449
BstSFI CTRYAG 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 2 cut(s) 112, 327
Cfr13I GGNCC 2 cut(s) 4, 59
CseI GACGC 2 cut(s) 326, 413
CviAII CATG 1 cut(s) 50
CviJI RGCY 5 cut(s) 19, 93, 121, 313, 340
CviKI_1 RGCY 5 cut(s) 19, 93, 121, 313, 340
DdeI CTNAG 2 cut(s) 8, 177
DpnI GATC 2 cut(s) 182, 472
DpnII GATC 2 cut(s) 180, 470
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 4, 59
EcoRII CCWGG 2 cut(s) 434, 449
FaeI CATG 1 cut(s) 53
FaiI YATR 4 cut(s) 51, 171, 332, 395
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 2 cut(s) 60, 205
FatI CATG 1 cut(s) 49
FspBI CTAG 3 cut(s) 258, 341, 493
HaeIII GGCC 1 cut(s) 19
HapII CCGG 2 cut(s) 62, 127
HgaI GACGC 2 cut(s) 326, 413
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 71
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 2 cut(s) 62, 127
HphI GGTGA 3 cut(s) 15, 364, 422
Hpy166II GTNNAC 4 cut(s) 152, 196, 281, 467
Hpy188I TCNGA 3 cut(s) 15, 147, 475
Hpy188III TCNNGA 3 cut(s) 153, 162, 202
Hpy8I GTNNAC 4 cut(s) 152, 196, 281, 467
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 76, 233
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 118
HpyF3I CTNAG 2 cut(s) 8, 177
HpySE526I ACGT 1 cut(s) 463
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 1 cut(s) 53
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 180, 470
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 8 cut(s) 75, 100, 140, 261, 421, 436, 448, 463
LweI GCATC 1 cut(s) 37
MaeI CTAG 3 cut(s) 258, 341, 493
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 288
MalI GATC 2 cut(s) 182, 472
MboI GATC 2 cut(s) 180, 470
MboII GAAGA 2 cut(s) 175, 246
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 254
MnlI CCTC 5 cut(s) 9, 99, 198, 318, 391
MseI TTAA 2 cut(s) 89, 195
MspI CCGG 2 cut(s) 62, 127
MspR9I CCNGG 3 cut(s) 63, 436, 451
MvaI CCWGG 2 cut(s) 436, 451
MwoI GCNNNNNNNGC 2 cut(s) 25, 118
NciI CCSGG 1 cut(s) 63
NdeII GATC 2 cut(s) 180, 470
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 434
Ppu21I YACGTR 1 cut(s) 464
PshAI GACNNNNGTC 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 434, 449
PspGI CCWGG 2 cut(s) 434, 449
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 4, 59
PsuI RGATCY 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 89, 195
Sau3AI GATC 2 cut(s) 180, 470
Sau96I GGNCC 2 cut(s) 4, 59
ScrFI CCNGG 3 cut(s) 63, 436, 451
SduI GDGCHC 1 cut(s) 254
SetI ASST 7 cut(s) 9, 95, 123, 329, 402, 452, 466
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 2 cut(s) 4, 59
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SsiI CCGC 3 cut(s) 26, 99, 229
SspMI CTAG 3 cut(s) 258, 341, 493
StyD4I CCNGG 3 cut(s) 61, 434, 449
TaiI ACGT 1 cut(s) 466
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 2 cut(s) 89, 195
Tru9I TTAA 2 cut(s) 89, 195
TscAI CASTG 2 cut(s) 119, 327
TseFI GTSAC 1 cut(s) 288
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 2 cut(s) 119, 327
VpaK11BI GGWCC 2 cut(s) 4, 59
XspI CTAG 3 cut(s) 258, 341, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.