RchiOBHm_Chr3g0467591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001119
Physical Location & Seq
Reverse (-)
13707118 .. 13707973
856 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43354

Sequence Viewer

Length: 633 bp
ATGGCTATTACTAGTCTGGTGGCTAAGCGTTCCTTTCTCATTGTTGCTTGGAGCGCCGCCTTGGTGTGGATTCCCTGTGGTTGCTGTTTGGGGTGGTGTGAGCGTGGTGGCGGTCGTATTGCTTCGGGGTGGTTGGAGATGAGGAATGAGCCAATCTTCTTCGGCCGGAACCCTTTGATGGTAGGCAGGGGCTTAGGGGTTTGGGAGTTGGATTTGGGATCGTCTTGGTATTGTTGTAGGGATTCATTATCCCAGGTGGACGCAGGCGAATGTGAGGTTGTCGTCGGCGATGGATGCAGCAAGCTGTCTGGAGGTGGCGATGCAAGGGAGGATGCTGCCAGGGTTTTTCCTAATTGGGCCTCCAGCTGGGCTGTTCTGGATGTGGGCCTCTTTGTGGGCTTTAGGATTGGGTGGCTTCGGGCCCAAAAGGCCTTTAGGGCTGCCTTGTCCTCCTGCTGGGATGACCGTTGTTGGGCTACTTGCTTTGGGCTCCCTAAGGCTAGGCTTCACAAAGGTGGAGGTGCATGCGGGCTGGCAGTTGACGGCTTGCCAAGTTGGGCTATCTGGGATTCCAACTGGACTGTGGGTTGCTTTTGGCTGGAATGGGGCTCTAGGGCCCATAGTACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.86

Weight (kDa)

7.43

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 111, 528
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 163
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 6 cut(s) 66, 178, 366, 394, 456, 472
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 252, 338
AleI CACNNNNGTG 1 cut(s) 513
AluBI AGCT 2 cut(s) 304, 366
AluI AGCT 2 cut(s) 304, 366
AlwI GGATC 1 cut(s) 226
AoxI GGCC 6 cut(s) 163, 357, 385, 420, 429, 615
ApaI GGGCCC 2 cut(s) 424, 619
ApeKI GCWGC 3 cut(s) 297, 335, 440
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 6 cut(s) 357, 385, 420, 421, 615, 616
AxyI CCTNAGG 1 cut(s) 495
BaeGI GKGCMC 2 cut(s) 424, 619
BanII GRGCYC 4 cut(s) 424, 492, 611, 619
BbvI GCAGC 3 cut(s) 309, 322, 427
BccI CCATC 2 cut(s) 172, 284
BceAI ACGGC 1 cut(s) 559
BciT130I CCWGG 2 cut(s) 254, 340
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 3 cut(s) 12, 501, 612
BfoI RGCGCY 1 cut(s) 57
BglI GCCNNNNNGGC 2 cut(s) 428, 437
BisI GCNGC 4 cut(s) 57, 298, 336, 441
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 4 cut(s) 58, 299, 337, 442
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 254, 340
BmgT120I GGNCC 6 cut(s) 357, 385, 420, 421, 615, 616
BmiI GGNNCC 4 cut(s) 170, 422, 491, 617
BmrFI CCNGG 2 cut(s) 254, 340
BmsI GCATC 3 cut(s) 284, 310, 322
BpmI CTGGAG 2 cut(s) 330, 346
Bpu10I CCTNAGC 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 24
BsaJI CCNNGG 3 cut(s) 60, 252, 339
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 178, 366, 394, 456, 472
Bse1I ACTGG 1 cut(s) 581
Bse21I CCTNAGG 1 cut(s) 495
BseBI CCWGG 2 cut(s) 254, 340
BseDI CCNNGG 3 cut(s) 60, 252, 339
BseGI GGATG 4 cut(s) 299, 337, 385, 466
BseLI CCNNNNNNNGG 6 cut(s) 66, 178, 366, 394, 456, 472
BseNI ACTGG 1 cut(s) 581
BseSI GKGCMC 2 cut(s) 424, 619
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 309, 322, 427
BseYI CCCAGC 2 cut(s) 366, 456
Bsh1285I CGRYCG 2 cut(s) 115, 166
BshFI GGCC 6 cut(s) 165, 359, 387, 422, 431, 617
BsiEI CGRYCG 2 cut(s) 115, 166
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 6 cut(s) 66, 178, 366, 394, 456, 472
BsnI GGCC 6 cut(s) 165, 359, 387, 422, 431, 617
Bsp120I GGGCCC 2 cut(s) 420, 615
Bsp1286I GDGCHC 4 cut(s) 424, 492, 611, 619
Bsp143I GATC 1 cut(s) 218
Bsp1720I GCTNAGC 1 cut(s) 24
BspACI CCGC 3 cut(s) 57, 111, 528
BspANI GGCC 6 cut(s) 165, 359, 387, 422, 431, 617
BspLI GGNNCC 4 cut(s) 170, 422, 491, 617
BspPI GGATC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 3 cut(s) 60, 252, 339
BssMI GATC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 254, 340
Bst4CI ACNGT 2 cut(s) 467, 583
BstC8I GCNNGC 6 cut(s) 265, 302, 526, 530, 534, 548
BstDEI CTNAG 3 cut(s) 24, 193, 495
BstF5I GGATG 4 cut(s) 299, 337, 385, 466
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstMCI CGRYCG 2 cut(s) 115, 166
BstMWI GCNNNNNNNGC 4 cut(s) 53, 294, 428, 437
BstNI CCWGG 2 cut(s) 254, 340
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 252, 338
BstSLI GKGCMC 2 cut(s) 424, 619
BstV1I GCAGC 3 cut(s) 309, 322, 427
BstZI CGGCCG 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 6 cut(s) 165, 359, 387, 422, 431, 617
BtgZI GCGATG 2 cut(s) 303, 333
BtsCI GGATG 4 cut(s) 299, 337, 385, 466
Cac8I GCNNGC 6 cut(s) 265, 302, 526, 530, 534, 548
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 6 cut(s) 357, 385, 420, 421, 615, 616
CseI GACGC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 624
CviAII CATG 1 cut(s) 525
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 3 cut(s) 24, 193, 495
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 4 cut(s) 424, 492, 611, 619
Eco52I CGGCCG 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 495
EcoO109I RGGNCCY 1 cut(s) 615
EcoRII CCWGG 2 cut(s) 252, 338
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 4 cut(s) 424, 492, 611, 619
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 528
FaiI YATR 2 cut(s) 526, 621
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 1 cut(s) 524
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 4 cut(s) 57, 298, 336, 441
FokI GGATG 4 cut(s) 306, 344, 392, 473
FriOI GRGCYC 4 cut(s) 424, 492, 611, 619
Fsp4HI GCNGC 4 cut(s) 57, 298, 336, 441
FspBI CTAG 3 cut(s) 12, 501, 612
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 57, 298, 336, 441
GsaI CCCAGC 2 cut(s) 370, 460
GsuI CTGGAG 2 cut(s) 330, 346
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 6 cut(s) 165, 359, 387, 422, 431, 617
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 528
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HinfI GANTC 3 cut(s) 70, 242, 569
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 259, 541
Hpy188III TCNNGA 2 cut(s) 309, 377
Hpy8I GTNNAC 2 cut(s) 259, 541
Hpy99I CGWCG 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 467, 583
HpyCH4V TGCA 3 cut(s) 297, 323, 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 294, 428, 437
HpyF3I CTNAG 3 cut(s) 24, 193, 495
Hsp92II CATG 1 cut(s) 528
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 51, 495
Lsp1109I GCAGC 3 cut(s) 309, 322, 427
LweI GCATC 3 cut(s) 284, 310, 322
MaeI CTAG 3 cut(s) 12, 501, 612
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 2 cut(s) 148, 151
MhlI GDGCHC 4 cut(s) 424, 492, 611, 619
MluCI AATT 1 cut(s) 352
MmeI TCCRAC 3 cut(s) 114, 189, 597
MnlI CCTC 8 cut(s) 135, 268, 305, 322, 370, 398, 460, 512
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 2 cut(s) 254, 340
MvaI CCWGG 2 cut(s) 254, 340
MwoI GCNNNNNNNGC 4 cut(s) 53, 294, 428, 437
NdeII GATC 1 cut(s) 218
NlaIII CATG 1 cut(s) 528
NlaIV GGNNCC 4 cut(s) 170, 422, 491, 617
NspI RCATGY 1 cut(s) 528
OliI CACNNNNGTG 1 cut(s) 513
PaeI GCATGC 1 cut(s) 528
PceI AGGCCT 1 cut(s) 431
PfeI GAWTC 3 cut(s) 70, 242, 569
PkrI GCNGC 4 cut(s) 58, 299, 337, 442
Psp6I CCWGG 2 cut(s) 252, 338
PspFI CCCAGC 2 cut(s) 366, 456
PspGI CCWGG 2 cut(s) 252, 338
PspN4I GGNNCC 4 cut(s) 170, 422, 491, 617
PspOMI GGGCCC 2 cut(s) 420, 615
PspPI GGNCC 6 cut(s) 357, 385, 420, 421, 615, 616
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 631
SatI GCNGC 4 cut(s) 57, 298, 336, 441
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 6 cut(s) 357, 385, 420, 421, 615, 616
ScaI AGTACT 1 cut(s) 625
ScrFI CCNGG 2 cut(s) 254, 340
SduI GDGCHC 4 cut(s) 424, 492, 611, 619
SetI ASST 7 cut(s) 258, 279, 306, 316, 368, 517, 523
SfaNI GCATC 3 cut(s) 284, 310, 322
SfiI GGCCNNNNNGGCC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 513
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 1 cut(s) 528
Sse9I AATT 1 cut(s) 352
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 3 cut(s) 57, 111, 528
SspMI CTAG 3 cut(s) 12, 501, 612
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 252, 338
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 467, 583
TasI AATT 1 cut(s) 352
TatI WGTACW 1 cut(s) 623
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 3 cut(s) 70, 242, 569
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TseI GCWGC 3 cut(s) 297, 335, 440
TspDTI ATGAA 1 cut(s) 234
XceI RCATGY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 3 cut(s) 12, 501, 612
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.