Rh3DG287500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001119
Physical Location & Seq
Reverse (-)
29674367 .. 29674600
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG287500.1

Sequence Viewer

Length: 234 bp
ATGGATCTGAGTTGGTCTGTATCAGATCGAAATGACTGGGTTTTGGATCAGGGTCCTCCGGCTGGTCTCTTTGCGGTGGTTGGGTGTCGTCGTAGGTCGGATATGGTCGTGGTTGATTTGGATGACAGTTGTTCGGGTTTCAAGCCAGAGTTTGCTATTTCTCAATCGAAGGACATGGTGGATGATCGCAATGTTTTCACTAATGTTAGACGTGGTAGTTCACTGCAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.64

Weight (kDa)

4.8

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclI AACGTT 1 cut(s) 229
AclWI GGATC 2 cut(s) 12, 54
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 142
AjiI CACGTC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 12, 54
AspS9I GGNCC 1 cut(s) 53
AvaII GGWCC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 196
BseGI GGATG 2 cut(s) 127, 187
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 4 cut(s) 4, 25, 46, 184
BspACI CCGC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 12, 54
BspTNI GGTCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 41
BssMI GATC 4 cut(s) 4, 25, 46, 184
Bst4CI ACNGT 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 2 cut(s) 127, 187
BstKTI GATC 4 cut(s) 7, 28, 49, 187
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 4, 25, 46, 184
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtrI CACGTC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 127, 187
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 53
CviAII CATG 1 cut(s) 175
CviJI RGCY 2 cut(s) 62, 145
CviKI_1 RGCY 2 cut(s) 62, 145
DdeI CTNAG 1 cut(s) 8
DpnI GATC 4 cut(s) 6, 27, 48, 186
DpnII GATC 4 cut(s) 4, 25, 46, 184
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 53
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 104, 176
FatI CATG 1 cut(s) 174
FokI GGATG 2 cut(s) 134, 194
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 178
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 3 cut(s) 9, 25, 100
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 1 cut(s) 93
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 2 cut(s) 211, 229
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 2 cut(s) 211, 229
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 4 cut(s) 4, 25, 46, 184
LpnPI CCDG 5 cut(s) 22, 35, 48, 72, 159
MaeII ACGT 2 cut(s) 211, 229
MalI GATC 4 cut(s) 6, 27, 48, 186
MboI GATC 4 cut(s) 4, 25, 46, 184
MflI RGATCY 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 1 cut(s) 66
MspI CCGG 1 cut(s) 59
NdeII GATC 4 cut(s) 4, 25, 46, 184
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 53
Psp1406I AACGTT 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 1 cut(s) 4
Sau3AI GATC 4 cut(s) 4, 25, 46, 184
Sau96I GGNCC 1 cut(s) 53
SetI ASST 3 cut(s) 98, 214, 232
SinI GGWCC 1 cut(s) 53
SsiI CCGC 1 cut(s) 74
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 2 cut(s) 214, 232
TaqI TCGA 2 cut(s) 28, 167
TscAI CASTG 1 cut(s) 228
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.