Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002527.1

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Reverse (-)

48866 .. 49357

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002527.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggactacactggtatagttgctgaagacccagttcagcttgatatatcaaacagcttcttccttggtgatgcatacattgtgttgaaatcaataaagggtgttgccaatggggttaatatagttaacaacatgttcactgggtacaataaggggattgaaattgttcaattggaccaatcaaatgggggtttcaaggagattgatcaagttgttgtggacaggaacgctgtgagggggatgaacataaagggcacaattggaaggagaactgtgcaaggcaatggaacctcatggaatatagactttaacccaattcttctatttcctaatcttattaggcatgtgcagtactctttgagcactggtgctagaaatgtgttccccaaccatgccctgaggaatgtatcagataatcgggtcgtgattgagtcagatgtggcggttccagcttcggtttttgtgacagtggatcaaggaatgtcaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016787 GO:0016798 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0034293 GO:0043062 GO:0043934 GO:0044085 GO:0044703 GO:0045229 GO:0048229 GO:0048236 GO:0048646 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0085029 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectate_lyase_3

Protein Analysis

163

Amino Acids

17.79

Weight (kDa)

5.58

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	146, 353
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	88, 161, 170, 196
AluBI	AGCT	4 cut(s)	40, 57, 452, 489
AluI	AGCT	4 cut(s)	40, 57, 452, 489
Alw21I	GWGCWC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	175
AxyI	CCTNAGG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	1 cut(s)	372
BmcAI	AGTACT	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	289, 447
BmrI	ACTGGG	2 cut(s)	26, 150
BmsI	GCATC	1 cut(s)	61
BmuI	ACTGGG	2 cut(s)	26, 150
BpiI	GAAGAC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	64
Bse1I	ACTGG	4 cut(s)	16, 32, 145, 370
Bse21I	CCTNAGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	4 cut(s)	16, 32, 145, 370
BseSI	GKGCMC	1 cut(s)	257
BsgI	GTGCAG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	257, 365
Bsp143I	GATC	2 cut(s)	205, 472
BspACI	CCGC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	289, 447
BspPI	GGATC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	4 cut(s)	16, 32, 145, 370
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	205, 472
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	274, 469
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	246
BstKTI	GATC	2 cut(s)	208, 475
BstMBI	GATC	2 cut(s)	205, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	136, 347
BstSLI	GKGCMC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	4 cut(s)	9, 138, 363, 474
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	145, 352
CviAII	CATG	4 cut(s)	133, 294, 344, 392
CviJI	RGCY	4 cut(s)	40, 57, 452, 489
CviKI_1	RGCY	4 cut(s)	40, 57, 452, 489
CviQI	GTAC	2 cut(s)	145, 352
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	2 cut(s)	207, 474
DpnII	GATC	2 cut(s)	205, 472
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	4 cut(s)	136, 297, 347, 395
FatI	CATG	4 cut(s)	132, 293, 343, 391
FbaI	TGATCA	1 cut(s)	205
FokI	GGATG	1 cut(s)	253
FspBI	CTAG	1 cut(s)	372
Hin1II	CATG	4 cut(s)	136, 297, 347, 395
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	431
HpaI	GTTAAC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	127, 138, 220
Hpy188I	TCNGA	2 cut(s)	412, 436
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	3 cut(s)	127, 138, 220
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	274, 469
HpyCH4V	TGCA	3 cut(s)	74, 277, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	4 cut(s)	136, 297, 347, 395
Ksp22I	TGATCA	1 cut(s)	205
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	205, 472
LpnPI	CCDG	6 cut(s)	45, 126, 208, 351, 410, 462
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	207, 474
MboI	GATC	2 cut(s)	205, 472
MboII	GAAGA	3 cut(s)	38, 52, 311
MfeI	CAATTG	2 cut(s)	170, 258
MhlI	GDGCHC	2 cut(s)	257, 365
MluCI	AATT	4 cut(s)	162, 170, 258, 315
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	3 cut(s)	228, 301, 393
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	3 cut(s)	117, 126, 309
MunI	CAATTG	2 cut(s)	170, 258
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeII	GATC	2 cut(s)	205, 472
NlaIII	CATG	4 cut(s)	136, 297, 347, 395
NlaIV	GGNNCC	2 cut(s)	289, 447
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	2 cut(s)	136, 347
PciI	ACATGT	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	289, 447
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	146, 353
RsaNI	GTAC	2 cut(s)	145, 352
SaqAI	TTAA	3 cut(s)	117, 126, 309
Sau3AI	GATC	2 cut(s)	205, 472
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	440
SduI	GDGCHC	2 cut(s)	257, 365
SetI	ASST	5 cut(s)	42, 59, 293, 454, 491
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	162, 170, 258, 315
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	274, 469
TasI	AATT	4 cut(s)	162, 170, 258, 315
TatI	WGTACW	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	117, 126, 309
Tru9I	TTAA	3 cut(s)	117, 126, 309
TscAI	CASTG	4 cut(s)	16, 145, 370, 474
TseFI	GTSAC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	4 cut(s)	16, 145, 370, 474
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	2 cut(s)	136, 347
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.