Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Forward (+)

24732264 .. 24732935

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGGAATGACAATGCTGTTACAGATGTGGTGATTTTTTCCGCTGCCGTTGGCATTATGATTTCAGGTCCGGCCAACATACTTTCCGGGGTCCATTGCTACAATAAGGCCACCGGATTTGGCGGCACGGGAATTTATTTGAGATTGCCCGGGTTGACACAAACACGAATCGTGAATTCGTACATGGACTACACCGGCATTGTTGCCGAAGATCCAGTGCAGCTTGATATCTCCAATAGTTTTTTCCTTGGTGATGCATACATTGTCCTAAAATCAATAAAAGGGGTTGCCAATGGGGTCAATATTGTAAACAACATGTTTAGTGGGTTCAATAAGGGGATAGGGATTGTTCAATTGGACCAAACAAATGGGCCTTTCAAAGAGGTTGAACAAGTATATGTGGACAGGAACAATGTGAGGGGTATGAACATAAAGGGCACAGTTGGAAGGAGGTCTGTGCAAGGCAATGGGAGCTCATGGACCGTAGATTTCAATCCAATTCTACTATTTCCTAACCTTATTCGGCACGTTCAATACACGCTAAGTTCCGGTGGCAACGCGTTCCCAAACCATGCCCTGAGGAACATGTCGAATAACCGTATTGTAATCGAGTCGAATGTGGCAGTTCCGGCTTCTGTTTTTGTGACAGTTGATCAAGGAGTGGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016787 GO:0016798 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0034293 GO:0043062 GO:0043934 GO:0044085 GO:0044703 GO:0045229 GO:0048229 GO:0048236 GO:0048646 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0085029 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectate_lyase_3

Protein Analysis

224

Amino Acids

23.9

Weight (kDa)

7.86

Isoelectric Point (pI)

25.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	42, 123
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	132, 175
AfaI	GTAC	1 cut(s)	182
AflIII	ACRYGT	3 cut(s)	315, 558, 585
AgsI	TTSAA	6 cut(s)	331, 353, 379, 389, 493, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	223, 474
AluI	AGCT	2 cut(s)	223, 474
Alw21I	GWGCWC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	72, 108, 371
ApeKI	GCWGC	2 cut(s)	44, 220
ApoI	RAATTY	2 cut(s)	132, 175
AspS9I	GGNCC	5 cut(s)	68, 91, 358, 371, 480
AsuC2I	CCSGG	3 cut(s)	88, 150, 151
AsuHPI	GGTGA	2 cut(s)	43, 263
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	4 cut(s)	68, 91, 358, 480
AxyI	CCTNAGG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	31, 232
BceAI	ACGGC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	3 cut(s)	88, 150, 151
BisI	GCNGC	3 cut(s)	45, 124, 221
BlsI	GCNGC	3 cut(s)	46, 125, 222
Bme1390I	CCNGG	3 cut(s)	88, 150, 151
Bme18I	GGWCC	4 cut(s)	68, 91, 358, 480
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	5 cut(s)	68, 91, 358, 371, 480
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	3 cut(s)	88, 150, 151
BmsI	GCATC	1 cut(s)	244
BpuMI	CCSGG	3 cut(s)	88, 150, 151
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	87, 149, 247
BsaWI	WCCGGW	2 cut(s)	113, 548
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	215
Bse21I	CCTNAGG	1 cut(s)	578
Bse3DI	GCAATG	2 cut(s)	94, 472
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	3 cut(s)	87, 149, 247
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	2 cut(s)	94, 472
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	31, 232
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	3 cut(s)	74, 110, 373
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	7 cut(s)	71, 87, 114, 150, 195, 549, 629
BsnI	GGCC	3 cut(s)	74, 110, 373
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	440, 476
Bsp143I	GATC	2 cut(s)	211, 652
BspACI	CCGC	2 cut(s)	42, 123
BspANI	GGCC	3 cut(s)	74, 110, 373
BspCNI	CTCAG	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	560
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	94, 472
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	87, 149, 247
BssMI	GATC	2 cut(s)	211, 652
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	4 cut(s)	442, 484, 599, 649
BstDEI	CTNAG	2 cut(s)	542, 578
BstFNI	CGCG	1 cut(s)	560
BstKTI	GATC	2 cut(s)	214, 655
BstMBI	GATC	2 cut(s)	211, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 629
BstNSI	RCATGY	2 cut(s)	319, 589
BstSCI	CCNGG	3 cut(s)	86, 148, 149
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	1 cut(s)	560
BstV1I	GCAGC	2 cut(s)	31, 232
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	74, 110, 373
BtsIMutI	CAGTG	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	5 cut(s)	68, 91, 358, 371, 480
Cfr9I	CCCGGG	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	5 cut(s)	184, 316, 477, 572, 586
CviJI	RGCY	6 cut(s)	74, 110, 223, 373, 474, 632
CviKI_1	RGCY	6 cut(s)	74, 110, 223, 373, 474, 632
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	542, 578
DpnI	GATC	2 cut(s)	213, 654
DpnII	GATC	2 cut(s)	211, 652
EaeI	YGGCCR	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	4 cut(s)	68, 91, 358, 480
Eco53kI	GAGCTC	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	578
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	5 cut(s)	187, 319, 480, 575, 589
FatI	CATG	5 cut(s)	183, 315, 476, 571, 585
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	3 cut(s)	45, 124, 221
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	45, 124, 221
GluI	GCNGC	3 cut(s)	45, 124, 221
HaeIII	GGCC	3 cut(s)	74, 110, 373
HapII	CCGG	7 cut(s)	71, 87, 114, 150, 195, 549, 629
Hin1II	CATG	5 cut(s)	187, 319, 480, 575, 589
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	168, 611
HpaII	CCGG	7 cut(s)	71, 87, 114, 150, 195, 549, 629
HphI	GGTGA	2 cut(s)	43, 263
Hpy166II	GTNNAC	3 cut(s)	156, 310, 403
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	3 cut(s)	156, 310, 403
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	4 cut(s)	442, 484, 599, 649
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	220, 257, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 629
HpyF3I	CTNAG	2 cut(s)	542, 578
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	5 cut(s)	187, 319, 480, 575, 589
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	211, 652
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	2 cut(s)	31, 232
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	19, 643
MalI	GATC	2 cut(s)	213, 654
MboI	GATC	2 cut(s)	211, 652
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	440, 476
MluCI	AATT	4 cut(s)	132, 175, 353, 498
MluI	ACGCGT	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	4 cut(s)	376, 411, 444, 573
Mph1103I	ATGCAT	1 cut(s)	259
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	7 cut(s)	71, 87, 114, 150, 195, 549, 629
MspR9I	CCNGG	3 cut(s)	88, 150, 151
MunI	CAATTG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	560
MwoI	GCNNNNNNNGC	2 cut(s)	471, 629
NciI	CCSGG	3 cut(s)	88, 150, 151
NdeII	GATC	2 cut(s)	211, 652
NlaIII	CATG	5 cut(s)	187, 319, 480, 575, 589
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	643
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	2 cut(s)	319, 589
PciI	ACATGT	2 cut(s)	315, 585
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	46, 125, 222
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PscI	ACATGT	2 cut(s)	315, 585
Psp124BI	GAGCTC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	5 cut(s)	68, 91, 358, 371, 480
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	476
SatI	GCNGC	3 cut(s)	45, 124, 221
Sau3AI	GATC	2 cut(s)	211, 652
Sau96I	GGNCC	5 cut(s)	68, 91, 358, 371, 480
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	3 cut(s)	88, 150, 151
SduI	GDGCHC	2 cut(s)	440, 476
SetI	ASST	7 cut(s)	70, 225, 387, 455, 476, 519, 531
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	4 cut(s)	68, 91, 358, 480
SmaI	CCCGGG	1 cut(s)	151
Sse9I	AATT	4 cut(s)	132, 175, 353, 498
SsiI	CCGC	2 cut(s)	42, 123
SspI	AATATT	1 cut(s)	304
SstI	GAGCTC	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	86, 148, 149
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	4 cut(s)	442, 484, 599, 649
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	590, 609, 614
TasI	AATT	4 cut(s)	132, 175, 353, 498
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	44, 220
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	440
TspMI	CCCGGG	1 cut(s)	149
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	4 cut(s)	68, 91, 358, 480
XapI	RAATTY	2 cut(s)	132, 175
XceI	RCATGY	2 cut(s)	319, 589
XmaI	CCCGGG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.