Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Forward (+)

24730983 .. 24732156

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGGCAATAATGCCGAAAACGGCTCTAATATGGTCAATCTTCATGGGATTTTGTAGCTTCATCGTAATTCATGCCTACGCAGAAGATTCTCAAATGGGTTATCGTCAGTTTCCCGGTGGCAATTACAACGATCATTTGCGAAAACTGCAAGAGTTCAAGGCATCACTCATCCGCCATGATTCGATTTCTGTTGCACCATCTTCAATCCTACCCTCCCCTAGTCCTAGCCTTATTGCTCCGCCGACGGGGAGCACTAGTCCACGTGTTTATCACGTGACATCGTACGGTGCTGATCCGACGGGGAGCAGAGACAGCACTGATGCACTTGCTCAAGCAATGGCTGATGCATTTAGAGGCCCAACTGAAGGGTTCTTGATAGAGGGAATTGCCAATCTTGGAGGTGCCCAGATCAATCTTGAGGGTGGCCTTTATCTGATCAGCAGGCCCTTGAGGTTGCCTGGAGCTGGAGTAGGAAACCTTATGATTCATGGAGGAACGTTACGCGCCTCGAATGATTTTCCAGCTGATGGTTACCTAATCGATTTATCGCCAACATCATCCGGTAACATGAAAGAAGAAACCAAAAAAGAGAGCTCAATGTCTGCACAGCTTTCATCATCATCCTACAACTATGAGTACATAACTCTCAAGGACCTATTGTTGGACTCTAACTACAGGGGAGGGGGCATTTCTGTCATAAACTCACTTAGGACCAGCATAGACAATTGTTACATAACACATTTCACCACCAATGGGATCGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016787 GO:0016798 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0034293 GO:0043062 GO:0043934 GO:0044085 GO:0044703 GO:0045229 GO:0048229 GO:0048236 GO:0048646 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0085029 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectate_lyase_3

Protein Analysis

257

Amino Acids

27.58

Weight (kDa)

5.59

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	175, 242
AclI	AACGTT	1 cut(s)	500
AclWI	GGATC	2 cut(s)	290, 767
AcuI	CTGAAG	1 cut(s)	387
AcvI	CACGTG	2 cut(s)	266, 277
AfaI	GTAC	2 cut(s)	287, 641
AfiI	CCNNNNNNNGG	6 cut(s)	248, 368, 467, 530, 664, 756
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	160, 207
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	5 cut(s)	60, 467, 527, 597, 613
AluI	AGCT	5 cut(s)	60, 467, 527, 597, 613
Alw21I	GWGCWC	2 cut(s)	257, 599
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	290, 767
AoxI	GGCC	3 cut(s)	358, 427, 446
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	4 cut(s)	359, 447, 655, 714
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	739
AvaII	GGWCC	2 cut(s)	655, 714
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	599
BbrPI	CACGTG	2 cut(s)	266, 277
Bbv12I	GWGCWC	2 cut(s)	257, 599
BccI	CCATC	2 cut(s)	208, 524
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	462
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	306
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	4 cut(s)	222, 228, 258, 769
BfmI	CTRYAG	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	117, 462
Bme18I	GGWCC	2 cut(s)	655, 714
BmgT120I	GGNCC	4 cut(s)	359, 447, 655, 714
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	117, 462
BmsI	GCATC	3 cut(s)	173, 313, 337
BpmI	CTGGAG	2 cut(s)	483, 489
BpuEI	CTTGAG	4 cut(s)	318, 440, 472, 635
BpuMI	CCSGG	1 cut(s)	117
Bsa29I	ATCGAT	2 cut(s)	543, 762
BsaAI	YACGTR	2 cut(s)	266, 277
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 456, 486
Bsc4I	CCNNNNNNNGG	6 cut(s)	248, 368, 467, 530, 664, 756
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	462
BseCI	ATCGAT	2 cut(s)	543, 762
BseGI	GGATG	3 cut(s)	171, 560, 623
BseLI	CCNNNNNNNGG	6 cut(s)	248, 368, 467, 530, 664, 756
BseMI	GCAATG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	3 cut(s)	360, 429, 448
BshNI	GGYRCC	1 cut(s)	404
BshVI	ATCGAT	2 cut(s)	543, 762
BsiHKAI	GWGCWC	2 cut(s)	257, 599
BsiSI	CCGG	2 cut(s)	117, 564
BsiWI	CGTACG	1 cut(s)	285
BslI	CCNNNNNNNGG	6 cut(s)	248, 368, 467, 530, 664, 756
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	3 cut(s)	360, 429, 448
Bsp1286I	GDGCHC	3 cut(s)	257, 409, 599
Bsp143I	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
BspACI	CCGC	2 cut(s)	175, 242
BspANI	GGCC	3 cut(s)	360, 429, 448
BspDI	ATCGAT	2 cut(s)	543, 762
BspFNI	CGCG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	290, 767
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	345
BssMI	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	290
BstBAI	YACGTR	2 cut(s)	266, 277
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	710
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	3 cut(s)	171, 560, 623
BstFNI	CGCG	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	6 cut(s)	136, 298, 414, 441, 762, 766
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 315
BstNI	CCWGG	1 cut(s)	462
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	115, 460
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	507
Bsu15I	ATCGAT	2 cut(s)	543, 762
BsuRI	GGCC	3 cut(s)	360, 429, 448
BsuTUI	ATCGAT	2 cut(s)	543, 762
BtsCI	GGATG	3 cut(s)	171, 560, 623
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	446
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	4 cut(s)	359, 447, 655, 714
ClaI	ATCGAT	2 cut(s)	543, 762
Csp6I	GTAC	2 cut(s)	286, 640
CviAII	CATG	5 cut(s)	46, 74, 179, 491, 571
CviQI	GTAC	2 cut(s)	286, 640
DdeI	CTNAG	1 cut(s)	710
DpnI	GATC	6 cut(s)	135, 297, 413, 440, 761, 765
DpnII	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
EciI	GGCGGA	2 cut(s)	164, 231
Ecl136II	GAGCTC	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	655, 714
Eco53kI	GAGCTC	1 cut(s)	597
Eco57I	CTGAAG	1 cut(s)	387
Eco72I	CACGTG	2 cut(s)	266, 277
Eco91I	GGTNACC	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	597
EcoO109I	RGGNCCY	2 cut(s)	447, 655
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	5 cut(s)	49, 77, 182, 494, 574
FatI	CATG	5 cut(s)	45, 73, 178, 490, 570
FbaI	TGATCA	1 cut(s)	438
FokI	GGATG	3 cut(s)	158, 547, 610
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	4 cut(s)	222, 228, 258, 769
GlaI	GCGC	1 cut(s)	508
GsuI	CTGGAG	2 cut(s)	483, 489
HaeIII	GGCC	3 cut(s)	360, 429, 448
HapII	CCGG	2 cut(s)	117, 564
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	49, 77, 182, 494, 574
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	89, 182, 487, 668
HpaII	CCGG	2 cut(s)	117, 564
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	300, 438
Hpy188III	TCNNGA	2 cut(s)	376, 419
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	2 cut(s)	250, 304
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	3 cut(s)	265, 276, 500
HpyCH4V	TGCA	5 cut(s)	151, 197, 326, 350, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 315
HpyF3I	CTNAG	1 cut(s)	710
HpySE526I	ACGT	3 cut(s)	265, 276, 500
Hsp92II	CATG	5 cut(s)	49, 77, 182, 494, 574
HspAI	GCGC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
LmnI	GCTCC	4 cut(s)	244, 252, 306, 464
LweI	GCATC	3 cut(s)	173, 313, 337
MaeI	CTAG	4 cut(s)	222, 228, 258, 769
MaeII	ACGT	3 cut(s)	265, 276, 500
MaeIII	GTNAC	5 cut(s)	277, 501, 533, 566, 731
MalI	GATC	6 cut(s)	135, 297, 413, 440, 761, 765
MboI	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
MboII	GAAGA	4 cut(s)	34, 98, 195, 590
MfeI	CAATTG	1 cut(s)	727
MhlI	GDGCHC	3 cut(s)	257, 409, 599
MluCI	AATT	4 cut(s)	69, 124, 387, 727
MlyI	GAGTC	1 cut(s)	662
MmeI	TCCRAC	2 cut(s)	323, 645
MnlI	CCTC	9 cut(s)	226, 350, 376, 395, 415, 447, 488, 520, 677
Mph1103I	ATGCAT	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	117, 564
MspR9I	CCNGG	2 cut(s)	117, 462
MunI	CAATTG	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	148, 315
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
NlaIII	CATG	5 cut(s)	49, 77, 182, 494, 574
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	89, 182, 487
Pfl23II	CGTACG	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	530
PleI	GAGTC	1 cut(s)	662
PmaCI	CACGTG	2 cut(s)	266, 277
PmlI	CACGTG	2 cut(s)	266, 277
PpsI	GAGTC	1 cut(s)	662
Ppu21I	YACGTR	2 cut(s)	266, 277
PpuMI	RGGWCCY	1 cut(s)	655
Psp124BI	GAGCTC	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	655
Psp6I	CCWGG	1 cut(s)	460
PspCI	CACGTG	2 cut(s)	266, 277
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	460
PspLI	CGTACG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	4 cut(s)	359, 447, 655, 714
PspPPI	RGGWCCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	287, 641
RsaNI	GTAC	2 cut(s)	286, 640
SacI	GAGCTC	1 cut(s)	599
Sau3AI	GATC	6 cut(s)	133, 295, 411, 438, 759, 763
Sau96I	GGNCC	4 cut(s)	359, 447, 655, 714
SchI	GAGTC	1 cut(s)	662
ScrFI	CCNGG	2 cut(s)	117, 462
SduI	GDGCHC	3 cut(s)	257, 409, 599
SfaNI	GCATC	3 cut(s)	173, 313, 337
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	2 cut(s)	655, 714
SmlI	CTYRAG	4 cut(s)	333, 419, 451, 650
SmoI	CTYRAG	4 cut(s)	333, 419, 451, 650
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	4 cut(s)	69, 124, 387, 727
SsiI	CCGC	2 cut(s)	175, 242
SspMI	CTAG	4 cut(s)	222, 228, 258, 769
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	115, 460
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	3 cut(s)	268, 279, 503
TaqI	TCGA	4 cut(s)	185, 512, 543, 762
TasI	AATT	4 cut(s)	69, 124, 387, 727
TatI	WGTACW	1 cut(s)	639
TfiI	GAWTC	3 cut(s)	89, 182, 487
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	6 cut(s)	34, 52, 62, 479, 587, 606
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	655, 714
XspI	CTAG	4 cut(s)	222, 228, 258, 769
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.