Prupe.3G025600_v2.0.a1

Polygalacturonase QRT3-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
1868593 .. 1870997
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G025600.1

Sequence Viewer

Length: 1410 bp
ATGCTGCCACCAAATGCTGTGTTAGTGAAGCTTTTAATGGGGTTTATGTATCTAAATGTAATGGTTAATCATGGAGAAAGCTCATACGCAGGGGCAGCTGGTACTTACCACGACCAAATGAAGCGCATGGCTTTGATGATGAAGGCATCACATACTATCCAAAATAAGGTGTCCTCGGGCTCACGTGTTCATCACGTGACTGAGTATGGTGCTGACCCCACTGGAAGATTGGACAGCACAGGGGCACTTCAGGAAGCTATCTCTGATGCCTTTGCATCTCCTCTTGAAGGTCACCTGATTACGGGTGTTGCTGACCTCGGAGGCACTGAAGTTCACCTTGATGGAGGAACGTACAAGATCAGCCGTCCATTGCGCTTCCCAGACACCGGTGGTGGAAACTTTATGATTCATGGTGGATCCCTTCATGCATCTGATGATTTCCCGACCGATCGCCATTTGATCGAGTTGTGGTCATCCTCGAATTCTTTTGTGTACGAAGACATTACATTCAAGGATCTCATGATAAACTCAAATTTCAGAGGTGGTGGCATTGCAGTTATAAATTCACTAAGAAGTACCATTGACAATTGTTACATTTCACATTTCACCACCAGTGGTATACTAATCCAAGGTGGCCATGAAACCTATGTTAGAAACTCCTTTATCGGCCAACACATCAATATCGGCGGTGATCACCGCGAAAGGAACTTTTCTGGTATTGGAATTAACATTCAAGGAAACGATAACGCAATTACCGATGTGGTAATTTTTTCAGCATCAATTGGTGTAATGGTACAAGGGCAAGCCAATGTGCTCACCGGGGTACATTGCTATAACAAGGCCACTACATGGGGTGGGACCGGAATTTATGTTCGTGCTCCTGGGTTGACCCAGACTCGAATACTGAACTCCTACTTTGATTTCACGGGTATTGTGGCGGAGGACCCGGTCCAGCTCCATATAGCGGGGTCATTCTTCCTTGGCAATGCCTTTATTTTGATTAAATCGTTGAAGGGTGTGGCATGTGGCATTAGTATTGTTGACAACATGTTTTCAGGTGATTATACGGGTGTCCCAATCGTCCAACTAGATCAATCTAACGGACAGTATTTTACTACCATTGATCAAGTCATGGTTGACCGAAATGTAGTACAGGGCATGGTTCTTAAATCAACGGTTGCCAAGGGGTCAGTTTGGAGCAATGGGACTAGATGGACCGTTGATTTCTCAAAACTTCTCCTCTTCCCTGATCTCATACAAAATGTGCAATACACATTGCATGCAAGTAAGTCATTTCCTAAGCACGTCCTACGAGACGTGTCGAGCAATCGTGTGATGGTGGAATCCGACGTGCCAGTTTCAGCCACGTTGCGTGTATCAGTAGATCAAAGCATGATGGGTTACGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

50.89

Weight (kDa)

6.2

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccB7I CCANNNNNTGG 1 cut(s) 849
AccI GTMKAC 1 cut(s) 619
AccII CGCG 1 cut(s) 699
AciI CCGC 4 cut(s) 687, 697, 938, 965
AclWI GGATC 3 cut(s) 411, 424, 522
AcoI YGGCCR 2 cut(s) 634, 667
AcsI RAATTY 4 cut(s) 481, 532, 562, 864
AcuI CTGAAG 2 cut(s) 233, 348
AcvI CACGTG 2 cut(s) 185, 196
AfaI GTAC 7 cut(s) 103, 353, 494, 577, 795, 825, 1152
AfiI CCNNNNNNNGG 6 cut(s) 166, 287, 301, 386, 849, 964
AflIII ACRYGT 3 cut(s) 184, 1047, 1317
AgeI ACCGGT 1 cut(s) 386
AgsI TTSAA 4 cut(s) 287, 511, 734, 1012
AjiI CACGTC 3 cut(s) 1306, 1318, 1351
AjnI CCWGG 1 cut(s) 880
AloI GAACNNNNNNTCC 2 cut(s) 855, 887
AluBI AGCT 5 cut(s) 31, 81, 98, 257, 955
AluI AGCT 5 cut(s) 31, 81, 98, 257, 955
Alw21I GWGCWC 2 cut(s) 816, 880
Alw26I GTCTC 1 cut(s) 1308
AlwI GGATC 3 cut(s) 411, 424, 522
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 3 cut(s) 634, 667, 840
ApeKI GCWGC 2 cut(s) 4, 95
ApoI RAATTY 4 cut(s) 481, 532, 562, 864
AsiGI ACCGGT 1 cut(s) 386
AspLEI GCGC 2 cut(s) 126, 375
AspS9I GGNCC 4 cut(s) 858, 943, 949, 1215
AsuC2I CCSGG 2 cut(s) 820, 947
AsuHPI GGTGA 7 cut(s) 284, 326, 598, 686, 701, 808, 1070
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 4 cut(s) 858, 943, 949, 1215
BaeGI GKGCMC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 636
BamHI GGATCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 182
BbrPI CACGTG 2 cut(s) 185, 196
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 816, 880
BbvI GCAGC 1 cut(s) 107
BccI CCATC 4 cut(s) 335, 1206, 1330, 1390
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 882
BclI TGATCA 2 cut(s) 691, 1123
BcnI CCSGG 2 cut(s) 820, 947
BcoDI GTCTC 1 cut(s) 1308
BfaI CTAG 2 cut(s) 1088, 1209
BisI GCNGC 2 cut(s) 5, 96
BlsI GCNGC 2 cut(s) 6, 97
Bme1390I CCNGG 3 cut(s) 820, 882, 947
Bme18I GGWCC 4 cut(s) 858, 943, 949, 1215
BmeT110I CYCGRG 1 cut(s) 175
BmgBI CACGTC 3 cut(s) 1306, 1318, 1351
BmgT120I GGNCC 4 cut(s) 858, 943, 949, 1215
BmiI GGNNCC 3 cut(s) 418, 859, 945
BmrFI CCNGG 3 cut(s) 820, 882, 947
BmsI GCATC 5 cut(s) 155, 256, 284, 437, 785
BpiI GAAGAC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 1299
BpuMI CCSGG 2 cut(s) 820, 947
BsaAI YACGTR 3 cut(s) 185, 196, 1405
BsaJI CCNNGG 7 cut(s) 174, 316, 628, 819, 881, 979, 1182
BsaWI WCCGGW 2 cut(s) 386, 860
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 287, 301, 386, 849, 964
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 3 cut(s) 226, 612, 1355
Bse3DI GCAATG 6 cut(s) 368, 549, 826, 991, 1207, 1274
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 7 cut(s) 174, 316, 628, 819, 881, 979, 1182
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 6 cut(s) 166, 287, 301, 386, 849, 964
BseMI GCAATG 6 cut(s) 368, 549, 826, 991, 1207, 1274
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 3 cut(s) 226, 612, 1355
BseRI GAGGAG 2 cut(s) 270, 1229
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 699
Bsh1285I CGRYCG 2 cut(s) 447, 451
BshFI GGCC 3 cut(s) 636, 669, 842
BshTI ACCGGT 1 cut(s) 386
BsiEI CGRYCG 2 cut(s) 447, 451
BsiHKAI GWGCWC 2 cut(s) 816, 880
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 4 cut(s) 387, 819, 861, 947
BslFI GGGAC 3 cut(s) 871, 1058, 1219
BslI CCNNNNNNNGG 6 cut(s) 166, 287, 301, 386, 849, 964
BsmAI GTCTC 1 cut(s) 1308
BsmBI CGTCTC 1 cut(s) 1308
BsmFI GGGAC 3 cut(s) 871, 1058, 1219
BsnI GGCC 3 cut(s) 636, 669, 842
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 182, 247, 816, 880
BspACI CCGC 4 cut(s) 687, 697, 938, 965
BspANI GGCC 3 cut(s) 636, 669, 842
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 699
BspHI TCATGA 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 418, 859, 945
BspPI GGATC 3 cut(s) 411, 424, 522
BsrDI GCAATG 6 cut(s) 368, 549, 826, 991, 1207, 1274
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 3 cut(s) 226, 612, 1355
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 7 cut(s) 174, 316, 628, 819, 881, 979, 1182
BssNAI GTATAC 1 cut(s) 620
BssT1I CCWWGG 3 cut(s) 628, 979, 1182
Bst1107I GTATAC 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 1107, 1177, 1219
Bst6I CTCTTC 1 cut(s) 1247
BstBAI YACGTR 3 cut(s) 185, 196, 1405
BstC8I GCNNGC 2 cut(s) 804, 1281
BstDEI CTNAG 3 cut(s) 201, 569, 1299
BstEII GGTNACC 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 473
BstFNI CGCG 1 cut(s) 699
BstHHI GCGC 2 cut(s) 126, 375
BstMAI GTCTC 1 cut(s) 1308
BstMCI CGRYCG 2 cut(s) 447, 451
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 3 cut(s) 1026, 1051, 1283
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 3 cut(s) 818, 880, 945
BstSLI GKGCMC 1 cut(s) 247
BstSNI TACGTA 1 cut(s) 1405
BstUI CGCG 1 cut(s) 699
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 504
BstX2I RGATCY 2 cut(s) 416, 514
BstYI RGATCY 2 cut(s) 416, 514
BstZ17I GTATAC 1 cut(s) 620
BsuRI GGCC 3 cut(s) 636, 669, 842
BtrI CACGTC 3 cut(s) 1306, 1318, 1351
BtsCI GGATG 1 cut(s) 473
BtsIMutI CAGTG 3 cut(s) 219, 324, 619
Cac8I GCNNGC 2 cut(s) 804, 1281
CciI TCATGA 1 cut(s) 519
CfoI GCGC 2 cut(s) 126, 375
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 4 cut(s) 858, 943, 949, 1215
Csp6I GTAC 7 cut(s) 102, 352, 493, 576, 794, 824, 1151
CspAI ACCGGT 1 cut(s) 386
CviQI GTAC 7 cut(s) 102, 352, 493, 576, 794, 824, 1151
DdeI CTNAG 3 cut(s) 201, 569, 1299
EaeI YGGCCR 2 cut(s) 634, 667
Eam1104I CTCTTC 1 cut(s) 1247
EarI CTCTTC 1 cut(s) 1247
EciI GGCGGA 1 cut(s) 953
Eco105I TACGTA 1 cut(s) 1405
Eco130I CCWWGG 3 cut(s) 628, 979, 1182
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 4 cut(s) 858, 943, 949, 1215
Eco57I CTGAAG 2 cut(s) 233, 348
Eco72I CACGTG 2 cut(s) 185, 196
Eco88I CYCGRG 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 943
EcoO65I GGTNACC 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 3 cut(s) 628, 979, 1182
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 3 cut(s) 628, 979, 1182
Esp3I CGTCTC 1 cut(s) 1308
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 3 cut(s) 871, 1058, 1219
FauI CCCGC 1 cut(s) 958
FbaI TGATCA 2 cut(s) 691, 1123
FblI GTMKAC 1 cut(s) 619
Fnu4HI GCNGC 2 cut(s) 5, 96
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 2 cut(s) 5, 96
FspBI CTAG 2 cut(s) 1088, 1209
GlaI GCGC 2 cut(s) 125, 374
GluI GCNGC 2 cut(s) 5, 96
HaeIII GGCC 3 cut(s) 636, 669, 842
HapII CCGG 4 cut(s) 387, 819, 861, 947
HhaI GCGC 2 cut(s) 126, 375
Hin6I GCGC 2 cut(s) 124, 373
HinP1I GCGC 2 cut(s) 124, 373
HincII GTYRAC 3 cut(s) 888, 1042, 1138
HindII GTYRAC 3 cut(s) 888, 1042, 1138
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 406, 895, 1343
HpaII CCGG 4 cut(s) 387, 819, 861, 947
HphI GGTGA 7 cut(s) 284, 326, 598, 686, 701, 808, 1070
Hpy166II GTNNAC 6 cut(s) 334, 493, 620, 888, 1042, 1138
Hpy188I TCNGA 5 cut(s) 265, 320, 433, 539, 1348
Hpy188III TCNNGA 4 cut(s) 251, 284, 442, 520
Hpy8I GTNNAC 6 cut(s) 334, 493, 620, 888, 1042, 1138
Hpy99I CGWCG 1 cut(s) 1352
HpyAV CCTTC 4 cut(s) 136, 281, 431, 1006
HpyCH4III ACNGT 3 cut(s) 1107, 1177, 1219
HpyCH4IV ACGT 8 cut(s) 184, 195, 350, 1305, 1317, 1350, 1367, 1404
HpyCH4V TGCA 6 cut(s) 275, 428, 554, 1267, 1279, 1283
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 3 cut(s) 201, 569, 1299
HpySE526I ACGT 8 cut(s) 184, 195, 350, 1305, 1317, 1350, 1367, 1404
HspAI GCGC 2 cut(s) 124, 373
Ksp22I TGATCA 2 cut(s) 691, 1123
LmnI GCTCC 3 cut(s) 883, 960, 1197
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 5 cut(s) 155, 256, 284, 437, 785
MaeI CTAG 2 cut(s) 1088, 1209
MaeII ACGT 8 cut(s) 184, 195, 350, 1305, 1317, 1350, 1367, 1404
MaeIII GTNAC 4 cut(s) 196, 290, 590, 1400
MboII GAAGA 4 cut(s) 237, 509, 967, 1234
MfeI CAATTG 2 cut(s) 586, 780
MflI RGATCY 2 cut(s) 416, 514
MhlI GDGCHC 4 cut(s) 182, 247, 816, 880
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 9 cut(s) 481, 532, 562, 586, 723, 750, 765, 780, 864
MluNI TGGCCA 1 cut(s) 636
MlyI GAGTC 1 cut(s) 889
MmeI TCCRAC 2 cut(s) 1108, 1371
MnlI CCTC 9 cut(s) 184, 291, 314, 326, 338, 487, 533, 934, 1250
Mox20I TGGCCA 1 cut(s) 636
Mph1103I ATGCAT 1 cut(s) 430
MscI TGGCCA 1 cut(s) 636
MseI TTAA 5 cut(s) 35, 66, 726, 1002, 1167
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 636
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 4 cut(s) 387, 819, 861, 947
MspR9I CCNGG 3 cut(s) 820, 882, 947
MunI CAATTG 2 cut(s) 586, 780
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 699
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 2 cut(s) 820, 947
NlaIV GGNNCC 3 cut(s) 418, 859, 945
NmuCI GTSAC 2 cut(s) 196, 290
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 1026, 1051, 1283
PaeI GCATGC 1 cut(s) 1283
PagI TCATGA 1 cut(s) 519
PciI ACATGT 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PfeI GAWTC 2 cut(s) 406, 1343
PflFI GACNNNGTC 1 cut(s) 947
PflMI CCANNNNNTGG 1 cut(s) 849
PinAI ACCGGT 1 cut(s) 386
PkrI GCNGC 2 cut(s) 6, 97
Ple19I CGATCG 1 cut(s) 451
PleI GAGTC 1 cut(s) 889
PmaCI CACGTG 2 cut(s) 185, 196
PmlI CACGTG 2 cut(s) 185, 196
PpsI GAGTC 1 cut(s) 889
Ppu21I YACGTR 3 cut(s) 185, 196, 1405
PpuMI RGGWCCY 1 cut(s) 943
PscI ACATGT 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 943
Psp6I CCWGG 1 cut(s) 880
PspCI CACGTG 2 cut(s) 185, 196
PspEI GGTNACC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 3 cut(s) 418, 859, 945
PspPI GGNCC 4 cut(s) 858, 943, 949, 1215
PspPPI RGGWCCY 1 cut(s) 943
PsuI RGATCY 2 cut(s) 416, 514
PsyI GACNNNGTC 1 cut(s) 947
PvuI CGATCG 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 7 cut(s) 103, 353, 494, 577, 795, 825, 1152
RsaNI GTAC 7 cut(s) 102, 352, 493, 576, 794, 824, 1151
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 5 cut(s) 35, 66, 726, 1002, 1167
SatI GCNGC 2 cut(s) 5, 96
Sau96I GGNCC 4 cut(s) 858, 943, 949, 1215
SchI GAGTC 1 cut(s) 889
ScrFI CCNGG 3 cut(s) 820, 882, 947
SduI GDGCHC 4 cut(s) 182, 247, 816, 880
SfaNI GCATC 5 cut(s) 155, 256, 284, 437, 785
SgrAI CRCCGGYG 1 cut(s) 386
SinI GGWCC 4 cut(s) 858, 943, 949, 1215
SmiMI CAYNNNNRTG 1 cut(s) 339
SnaBI TACGTA 1 cut(s) 1405
SphI GCATGC 1 cut(s) 1283
Sse9I AATT 9 cut(s) 481, 532, 562, 586, 723, 750, 765, 780, 864
SsiI CCGC 4 cut(s) 687, 697, 938, 965
SspMI CTAG 2 cut(s) 1088, 1209
StyD4I CCNGG 3 cut(s) 818, 880, 945
StyI CCWWGG 3 cut(s) 628, 979, 1182
TaaI ACNGT 3 cut(s) 1107, 1177, 1219
TaiI ACGT 8 cut(s) 187, 198, 353, 1308, 1320, 1353, 1370, 1407
TaqI TCGA 4 cut(s) 462, 479, 898, 1322
TaqII GACCGA 2 cut(s) 461, 1155
TasI AATT 9 cut(s) 481, 532, 562, 586, 723, 750, 765, 780, 864
TatI WGTACW 1 cut(s) 1150
TfiI GAWTC 2 cut(s) 406, 1343
Tru1I TTAA 5 cut(s) 35, 66, 726, 1002, 1167
Tru9I TTAA 5 cut(s) 35, 66, 726, 1002, 1167
TscAI CASTG 3 cut(s) 226, 331, 619
TseFI GTSAC 2 cut(s) 196, 290
TseI GCWGC 2 cut(s) 4, 95
Tsp45I GTSAC 2 cut(s) 196, 290
TspDTI ATGAA 6 cut(s) 134, 155, 179, 398, 413, 654
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 3 cut(s) 226, 331, 619
Tth111I GACNNNGTC 1 cut(s) 947
Van91I CCANNNNNTGG 1 cut(s) 849
VpaK11BI GGWCC 4 cut(s) 858, 943, 949, 1215
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 4 cut(s) 481, 532, 562, 864
XceI RCATGY 3 cut(s) 1026, 1051, 1283
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 2 cut(s) 1088, 1209
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.