Polygalacturonase QRT3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 |
| fragaria_vesca | FvH4_3g12840 FvH4_6g36530 |
| malus_domestica | MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1 |
| prunus_persica | Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1 |
| pyrus_communis | pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190 |
| rosa_chinensis | RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781 |
| rosa_laevigata | RLG00000020361 RLG00000032562 |
| rosa_multiflora | Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00057520 Rroxscaffold_2G00098530 |
| rosa_rugosa | Rorug02G0408600 Rorug05G0062800 Rorug05G0062900 |
| rosa_samantha | Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000 |
| rosa_wichuraiana | Rw2G038110 Rw5G013550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 882 |
| AarI | CACCTGC | 1 cut(s) | 1094 |
| Acc36I | ACCTGC | 2 cut(s) | 98, 1094 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 897 |
| AccI | GTMKAC | 1 cut(s) | 1089 |
| AccII | CGCG | 1 cut(s) | 239 |
| AccIII | TCCGGA | 1 cut(s) | 1013 |
| AciI | CCGC | 4 cut(s) | 184, 499, 735, 827 |
| AclI | AACGTT | 1 cut(s) | 729 |
| AclWI | GGATC | 7 cut(s) | 220, 459, 472, 986, 1024, 1204, 1440 |
| AcoI | YGGCCR | 3 cut(s) | 682, 715, 984 |
| AcsI | RAATTY | 3 cut(s) | 580, 912, 955 |
| AcvI | CACGTG | 1 cut(s) | 227 |
| AfaI | GTAC | 5 cut(s) | 112, 542, 843, 1120, 1200 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 897, 945, 1384 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AgeI | ACCGGT | 1 cut(s) | 434 |
| AgsI | TTSAA | 5 cut(s) | 76, 329, 538, 955, 1060 |
| AjnI | CCWGG | 2 cut(s) | 97, 132 |
| AleI | CACNNNNGTG | 2 cut(s) | 869, 1377 |
| AluBI | AGCT | 4 cut(s) | 90, 299, 376, 1003 |
| AluI | AGCT | 4 cut(s) | 90, 299, 376, 1003 |
| Alw26I | GTCTC | 1 cut(s) | 202 |
| AlwI | GGATC | 7 cut(s) | 220, 459, 472, 986, 1024, 1204, 1440 |
| Ama87I | CYCGRG | 1 cut(s) | 929 |
| Aor13HI | TCCGGA | 1 cut(s) | 1013 |
| AoxI | GGCC | 4 cut(s) | 682, 715, 888, 984 |
| ApeKI | GCWGC | 2 cut(s) | 120, 824 |
| ApoI | RAATTY | 3 cut(s) | 580, 912, 955 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1082, 1114 |
| AseI | ATTAAT | 1 cut(s) | 609 |
| AsiGI | ACCGGT | 1 cut(s) | 434 |
| AspLEI | GCGC | 1 cut(s) | 150 |
| AspS9I | GGNCC | 3 cut(s) | 136, 562, 991 |
| AsuC2I | CCSGG | 4 cut(s) | 868, 930, 931, 946 |
| AsuHPI | GGTGA | 6 cut(s) | 113, 749, 856, 918, 1118, 1153 |
| AvaI | CYCGRG | 1 cut(s) | 929 |
| AvaII | GGWCC | 3 cut(s) | 136, 562, 991 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BalI | TGGCCA | 1 cut(s) | 684 |
| BamHI | GGATCC | 1 cut(s) | 464 |
| BbrPI | CACGTG | 1 cut(s) | 227 |
| BbvI | GCAGC | 2 cut(s) | 132, 836 |
| BccI | CCATC | 6 cut(s) | 37, 337, 380, 510, 750, 891 |
| BceAI | ACGGC | 2 cut(s) | 179, 393 |
| BciT130I | CCWGG | 2 cut(s) | 99, 134 |
| BclI | TGATCA | 2 cut(s) | 1138, 1171 |
| BcnI | CCSGG | 4 cut(s) | 868, 930, 931, 946 |
| BcoDI | GTCTC | 1 cut(s) | 202 |
| BfaI | CTAG | 2 cut(s) | 201, 657 |
| BfmI | CTRYAG | 1 cut(s) | 627 |
| BfuAI | ACCTGC | 2 cut(s) | 98, 1094 |
| BisI | GCNGC | 2 cut(s) | 121, 825 |
| BlsI | GCNGC | 2 cut(s) | 122, 826 |
| Bme1390I | CCNGG | 6 cut(s) | 99, 134, 868, 930, 931, 946 |
| Bme18I | GGWCC | 3 cut(s) | 136, 562, 991 |
| BmeT110I | CYCGRG | 1 cut(s) | 929 |
| BmgT120I | GGNCC | 3 cut(s) | 136, 562, 991 |
| BmiI | GGNNCC | 3 cut(s) | 138, 466, 993 |
| BmrFI | CCNGG | 6 cut(s) | 99, 134, 868, 930, 931, 946 |
| BmsI | GCATC | 4 cut(s) | 94, 298, 485, 1346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 515, 547 |
| BpmI | CTGGAG | 1 cut(s) | 275 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1230 |
| BpuEI | CTTGAG | 2 cut(s) | 192, 542 |
| BpuMI | CCSGG | 4 cut(s) | 868, 930, 931, 946 |
| BsaAI | YACGTR | 2 cut(s) | 227, 1202 |
| BsaBI | GATNNNNATC | 1 cut(s) | 217 |
| BsaJI | CCNNGG | 5 cut(s) | 97, 676, 867, 929, 987 |
| BsaWI | WCCGGW | 4 cut(s) | 263, 434, 893, 1013 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 165, 195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 897, 945, 1384 |
| Bse118I | RCCGGY | 1 cut(s) | 434 |
| Bse1I | ACTGG | 1 cut(s) | 1120 |
| Bse3DI | GCAATG | 3 cut(s) | 667, 1039, 1322 |
| Bse8I | GATNNNNATC | 1 cut(s) | 217 |
| BseAI | TCCGGA | 1 cut(s) | 1013 |
| BseBI | CCWGG | 2 cut(s) | 99, 134 |
| BseDI | CCNNGG | 5 cut(s) | 97, 676, 867, 929, 987 |
| BseGI | GGATG | 2 cut(s) | 476, 902 |
| BseJI | GATNNNNATC | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 897, 945, 1384 |
| BseMI | GCAATG | 3 cut(s) | 667, 1039, 1322 |
| BseMII | CTCAG | 3 cut(s) | 234, 386, 1290 |
| BseNI | ACTGG | 1 cut(s) | 1120 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BseXI | GCAGC | 2 cut(s) | 132, 836 |
| BsgI | GTGCAG | 1 cut(s) | 459 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| Bsh1285I | CGRYCG | 3 cut(s) | 264, 499, 831 |
| BshFI | GGCC | 4 cut(s) | 684, 717, 890, 986 |
| BshTI | ACCGGT | 1 cut(s) | 434 |
| BsiEI | CGRYCG | 3 cut(s) | 264, 499, 831 |
| BsiHKCI | CYCGRG | 1 cut(s) | 929 |
| BsiSI | CCGG | 8 cut(s) | 264, 435, 762, 867, 894, 930, 946, 1014 |
| BslFI | GGGAC | 2 cut(s) | 406, 1267 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 897, 945, 1384 |
| BsmAI | GTCTC | 1 cut(s) | 202 |
| BsmBI | CGTCTC | 1 cut(s) | 202 |
| BsmFI | GGGAC | 2 cut(s) | 406, 1267 |
| BsnI | GGCC | 4 cut(s) | 684, 717, 890, 986 |
| BsoBI | CYCGRG | 1 cut(s) | 929 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp13I | TCCGGA | 1 cut(s) | 1013 |
| BspACI | CCGC | 4 cut(s) | 184, 499, 735, 827 |
| BspANI | GGCC | 4 cut(s) | 684, 717, 890, 986 |
| BspCNI | CTCAG | 3 cut(s) | 235, 385, 1289 |
| BspEI | TCCGGA | 1 cut(s) | 1013 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspLI | GGNNCC | 3 cut(s) | 138, 466, 993 |
| BspMI | ACCTGC | 2 cut(s) | 98, 1094 |
| BspPI | GGATC | 7 cut(s) | 220, 459, 472, 986, 1024, 1204, 1440 |
| BsrDI | GCAATG | 3 cut(s) | 667, 1039, 1322 |
| BsrFI | RCCGGY | 1 cut(s) | 434 |
| BsrI | ACTGG | 1 cut(s) | 1120 |
| BssAI | RCCGGY | 1 cut(s) | 434 |
| BssECI | CCNNGG | 5 cut(s) | 97, 676, 867, 929, 987 |
| Bst2UI | CCWGG | 2 cut(s) | 99, 134 |
| Bst4CI | ACNGT | 8 cut(s) | 39, 64, 190, 680, 1225, 1267, 1379, 1387 |
| BstBAI | YACGTR | 2 cut(s) | 227, 1202 |
| BstC8I | GCNNGC | 3 cut(s) | 297, 1329, 1442 |
| BstDEI | CTNAG | 6 cut(s) | 243, 372, 617, 1027, 1230, 1276 |
| BstDSI | CCRYGG | 1 cut(s) | 676 |
| BstEII | GGTNACC | 2 cut(s) | 737, 924 |
| BstF5I | GGATG | 2 cut(s) | 476, 902 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 1 cut(s) | 150 |
| BstMAI | GTCTC | 1 cut(s) | 202 |
| BstMCI | CGRYCG | 3 cut(s) | 264, 499, 831 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 723, 732, 1446 |
| BstNI | CCWGG | 2 cut(s) | 99, 134 |
| BstNSI | RCATGY | 2 cut(s) | 1424, 1444 |
| BstPI | GGTNACC | 2 cut(s) | 737, 924 |
| BstSCI | CCNGG | 6 cut(s) | 97, 132, 866, 928, 929, 944 |
| BstSFI | CTRYAG | 1 cut(s) | 627 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 2 cut(s) | 132, 836 |
| BstX2I | RGATCY | 1 cut(s) | 464 |
| BstYI | RGATCY | 1 cut(s) | 464 |
| BsuRI | GGCC | 4 cut(s) | 684, 717, 890, 986 |
| BtgI | CCRYGG | 1 cut(s) | 676 |
| BtsCI | GGATG | 2 cut(s) | 476, 902 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| BveI | ACCTGC | 2 cut(s) | 98, 1094 |
| Cac8I | GCNNGC | 3 cut(s) | 297, 1329, 1442 |
| CfoI | GCGC | 1 cut(s) | 150 |
| Cfr10I | RCCGGY | 1 cut(s) | 434 |
| Cfr13I | GGNCC | 3 cut(s) | 136, 562, 991 |
| Cfr9I | CCCGGG | 1 cut(s) | 929 |
| Csp6I | GTAC | 5 cut(s) | 111, 541, 842, 1119, 1199 |
| CspAI | ACCGGT | 1 cut(s) | 434 |
| CviAII | CATG | 5 cut(s) | 116, 151, 686, 1421, 1441 |
| CviQI | GTAC | 5 cut(s) | 111, 541, 842, 1119, 1199 |
| DdeI | CTNAG | 6 cut(s) | 243, 372, 617, 1027, 1230, 1276 |
| EaeI | YGGCCR | 3 cut(s) | 682, 715, 984 |
| Eco47I | GGWCC | 3 cut(s) | 136, 562, 991 |
| Eco72I | CACGTG | 1 cut(s) | 227 |
| Eco88I | CYCGRG | 1 cut(s) | 929 |
| Eco91I | GGTNACC | 2 cut(s) | 737, 924 |
| EcoO109I | RGGNCCY | 3 cut(s) | 136, 562, 991 |
| EcoO65I | GGTNACC | 2 cut(s) | 737, 924 |
| EcoRI | GAATTC | 2 cut(s) | 912, 955 |
| EcoRII | CCWGG | 2 cut(s) | 97, 132 |
| Esp3I | CGTCTC | 1 cut(s) | 202 |
| FaeI | CATG | 5 cut(s) | 119, 154, 689, 1424, 1444 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1272, 1304 |
| FaqI | GGGAC | 2 cut(s) | 406, 1267 |
| FatI | CATG | 5 cut(s) | 115, 150, 685, 1420, 1440 |
| FbaI | TGATCA | 2 cut(s) | 1138, 1171 |
| FblI | GTMKAC | 1 cut(s) | 1089 |
| Fnu4HI | GCNGC | 2 cut(s) | 121, 825 |
| FokI | GGATG | 2 cut(s) | 463, 909 |
| Fsp4HI | GCNGC | 2 cut(s) | 121, 825 |
| FspBI | CTAG | 2 cut(s) | 201, 657 |
| GlaI | GCGC | 1 cut(s) | 149 |
| GluI | GCNGC | 2 cut(s) | 121, 825 |
| GsuI | CTGGAG | 1 cut(s) | 275 |
| HaeIII | GGCC | 4 cut(s) | 684, 717, 890, 986 |
| HapII | CCGG | 8 cut(s) | 264, 435, 762, 867, 894, 930, 946, 1014 |
| HhaI | GCGC | 1 cut(s) | 150 |
| Hin1II | CATG | 5 cut(s) | 119, 154, 689, 1424, 1444 |
| Hin6I | GCGC | 1 cut(s) | 148 |
| HinP1I | GCGC | 1 cut(s) | 148 |
| HincII | GTYRAC | 2 cut(s) | 936, 1090 |
| HindII | GTYRAC | 2 cut(s) | 936, 1090 |
| HinfI | GANTC | 2 cut(s) | 524, 1369 |
| HpaII | CCGG | 8 cut(s) | 264, 435, 762, 867, 894, 930, 946, 1014 |
| HphI | GGTGA | 6 cut(s) | 113, 749, 856, 918, 1118, 1153 |
| Hpy166II | GTNNAC | 4 cut(s) | 422, 936, 1090, 1263 |
| Hpy188I | TCNGA | 8 cut(s) | 274, 307, 481, 492, 507, 523, 587, 1279 |
| Hpy188III | TCNNGA | 3 cut(s) | 383, 746, 1014 |
| Hpy8I | GTNNAC | 4 cut(s) | 422, 936, 1090, 1263 |
| Hpy99I | CGWCG | 2 cut(s) | 1225, 1417 |
| HpyAV | CCTTC | 6 cut(s) | 157, 322, 323, 479, 718, 1054 |
| HpyCH4III | ACNGT | 8 cut(s) | 39, 64, 190, 680, 1225, 1267, 1379, 1387 |
| HpyCH4IV | ACGT | 5 cut(s) | 26, 226, 729, 1201, 1415 |
| HpyCH4V | TGCA | 9 cut(s) | 57, 107, 440, 602, 797, 874, 1327, 1337, 1420 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 723, 732, 1446 |
| HpyF3I | CTNAG | 6 cut(s) | 243, 372, 617, 1027, 1230, 1276 |
| HpySE526I | ACGT | 5 cut(s) | 26, 226, 729, 1201, 1415 |
| Hsp92II | CATG | 5 cut(s) | 119, 154, 689, 1424, 1444 |
| HspAI | GCGC | 1 cut(s) | 148 |
| Kpn2I | TCCGGA | 1 cut(s) | 1013 |
| Ksp22I | TGATCA | 2 cut(s) | 1138, 1171 |
| LmnI | GCTCC | 1 cut(s) | 1008 |
| Lsp1109I | GCAGC | 2 cut(s) | 132, 836 |
| LweI | GCATC | 4 cut(s) | 94, 298, 485, 1346 |
| MaeI | CTAG | 2 cut(s) | 201, 657 |
| MaeII | ACGT | 5 cut(s) | 26, 226, 729, 1201, 1415 |
| MaeIII | GTNAC | 6 cut(s) | 737, 799, 924, 1247, 1370, 1381 |
| MboII | GAAGA | 1 cut(s) | 1015 |
| MflI | RGATCY | 1 cut(s) | 464 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MlsI | TGGCCA | 1 cut(s) | 684 |
| MluNI | TGGCCA | 1 cut(s) | 684 |
| MlyI | GAGTC | 2 cut(s) | 533, 1378 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| Mox20I | TGGCCA | 1 cut(s) | 684 |
| MroI | TCCGGA | 1 cut(s) | 1013 |
| MscI | TGGCCA | 1 cut(s) | 684 |
| MseI | TTAA | 3 cut(s) | 609, 780, 1215 |
| MslI | CAYNNNNRTG | 3 cut(s) | 384, 869, 1377 |
| Msp20I | TGGCCA | 1 cut(s) | 684 |
| MspA1I | CMGCKG | 1 cut(s) | 827 |
| MspI | CCGG | 8 cut(s) | 264, 435, 762, 867, 894, 930, 946, 1014 |
| MspR9I | CCNGG | 6 cut(s) | 99, 134, 868, 930, 931, 946 |
| MvaI | CCWGG | 2 cut(s) | 99, 134 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 723, 732, 1446 |
| NciI | CCSGG | 4 cut(s) | 868, 930, 931, 946 |
| NlaIII | CATG | 5 cut(s) | 119, 154, 689, 1424, 1444 |
| NlaIV | GGNNCC | 3 cut(s) | 138, 466, 993 |
| NmeAIII | GCCGAG | 2 cut(s) | 800, 1012 |
| NmuCI | GTSAC | 4 cut(s) | 737, 924, 1370, 1381 |
| NspI | RCATGY | 2 cut(s) | 1424, 1444 |
| OliI | CACNNNNGTG | 2 cut(s) | 869, 1377 |
| PaeI | GCATGC | 1 cut(s) | 1444 |
| PaqCI | CACCTGC | 1 cut(s) | 1094 |
| PflFI | GACNNNGTC | 1 cut(s) | 995 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 897 |
| PinAI | ACCGGT | 1 cut(s) | 434 |
| PkrI | GCNGC | 2 cut(s) | 122, 826 |
| PleI | GAGTC | 2 cut(s) | 532, 1377 |
| PmaCI | CACGTG | 1 cut(s) | 227 |
| PmlI | CACGTG | 1 cut(s) | 227 |
| PpsI | GAGTC | 2 cut(s) | 532, 1377 |
| Ppu21I | YACGTR | 2 cut(s) | 227, 1202 |
| PpuMI | RGGWCCY | 3 cut(s) | 136, 562, 991 |
| PshBI | ATTAAT | 1 cut(s) | 609 |
| PsiI | TTATAA | 1 cut(s) | 882 |
| Psp1406I | AACGTT | 1 cut(s) | 729 |
| Psp5II | RGGWCCY | 3 cut(s) | 136, 562, 991 |
| Psp6I | CCWGG | 2 cut(s) | 97, 132 |
| PspCI | CACGTG | 1 cut(s) | 227 |
| PspEI | GGTNACC | 2 cut(s) | 737, 924 |
| PspGI | CCWGG | 2 cut(s) | 97, 132 |
| PspN4I | GGNNCC | 3 cut(s) | 138, 466, 993 |
| PspPI | GGNCC | 3 cut(s) | 136, 562, 991 |
| PspPPI | RGGWCCY | 3 cut(s) | 136, 562, 991 |
| PsuI | RGATCY | 1 cut(s) | 464 |
| PsyI | GACNNNGTC | 1 cut(s) | 995 |
| RsaI | GTAC | 5 cut(s) | 112, 542, 843, 1120, 1200 |
| RsaNI | GTAC | 5 cut(s) | 111, 541, 842, 1119, 1199 |
| RseI | CAYNNNNRTG | 3 cut(s) | 384, 869, 1377 |
| SalI | GTCGAC | 1 cut(s) | 1088 |
| SaqAI | TTAA | 3 cut(s) | 609, 780, 1215 |
| SatI | GCNGC | 2 cut(s) | 121, 825 |
| Sau96I | GGNCC | 3 cut(s) | 136, 562, 991 |
| SchI | GAGTC | 2 cut(s) | 533, 1378 |
| ScrFI | CCNGG | 6 cut(s) | 99, 134, 868, 930, 931, 946 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SfaNI | GCATC | 4 cut(s) | 94, 298, 485, 1346 |
| SfcI | CTRYAG | 1 cut(s) | 627 |
| SgrAI | CRCCGGYG | 1 cut(s) | 434 |
| SinI | GGWCC | 3 cut(s) | 136, 562, 991 |
| SmaI | CCCGGG | 1 cut(s) | 931 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 384, 869, 1377 |
| SmlI | CTYRAG | 2 cut(s) | 207, 557 |
| SmoI | CTYRAG | 2 cut(s) | 207, 557 |
| SphI | GCATGC | 1 cut(s) | 1444 |
| SsiI | CCGC | 4 cut(s) | 184, 499, 735, 827 |
| SspI | AATATT | 2 cut(s) | 859, 1157 |
| SspMI | CTAG | 2 cut(s) | 201, 657 |
| StyD4I | CCNGG | 6 cut(s) | 97, 132, 866, 928, 929, 944 |
| TaaI | ACNGT | 8 cut(s) | 39, 64, 190, 680, 1225, 1267, 1379, 1387 |
| TaiI | ACGT | 5 cut(s) | 29, 229, 732, 1204, 1418 |
| TaqI | TCGA | 4 cut(s) | 510, 1089, 1189, 1220 |
| TaqII | GACCGA | 1 cut(s) | 912 |
| Tru1I | TTAA | 3 cut(s) | 609, 780, 1215 |
| Tru9I | TTAA | 3 cut(s) | 609, 780, 1215 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TseFI | GTSAC | 4 cut(s) | 737, 924, 1370, 1381 |
| TseI | GCWGC | 2 cut(s) | 120, 824 |
| Tsp45I | GTSAC | 4 cut(s) | 737, 924, 1370, 1381 |
| TspDTI | ATGAA | 9 cut(s) | 59, 159, 176, 221, 304, 368, 700, 702, 905 |
| TspGWI | ACGGA | 3 cut(s) | 96, 402, 1375 |
| TspMI | CCCGGG | 1 cut(s) | 929 |
| TspRI | CASTG | 1 cut(s) | 193 |
| Tth111I | GACNNNGTC | 1 cut(s) | 995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 897 |
| VpaK11BI | GGWCC | 3 cut(s) | 136, 562, 991 |
| VspI | ATTAAT | 1 cut(s) | 609 |
| XapI | RAATTY | 3 cut(s) | 580, 912, 955 |
| XceI | RCATGY | 2 cut(s) | 1424, 1444 |
| XmaI | CCCGGG | 1 cut(s) | 929 |
| XmiI | GTMKAC | 1 cut(s) | 1089 |
| XspI | CTAG | 2 cut(s) | 201, 657 |