Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378405.1

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1140

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378405.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

attcatggaggaacgttgagggcctcagataacttcccgactgatgggtacttgattgatttatcaacttcatcatcatcatcctccaacaagaatgaaaaaaacaaagagagctcatcatcaatgtctgcacagctttcttcatcatcctacaactatgagtacataaccctaaaagaccttatgctagacgccaactacagaggtgggggcatttcagtcataaactcactcagaaccagcatagacaattgctacataacccatttcaacaccgatggcattctagtccaaagtggccatgaaacctacatcaggaactccttcctaggccagcacatcaccgcgggcggtgatcacgaagaaagaaacttttccggcactgcaatcaaccttaagggaaatgacaatgctgtgacagatgtggtgattttctccgcggctgtaggtataatgatttcgggaccggctaatatactttcgggtgtacattgctacaataaggccacaggtttcggaggtgttgggatttacttgagattgcctggtttgacacagactaggatcgtcaattcttacatggactacactggtatagttgctgaagacccagttcagcttgatatatcaaacagcttcttccttggtgatgcatacattgtgttgaaatcaataaagggagttgccaatggggttaatatagttaacaacatgttcactgggtacaataaggggattgaaattgttcaattggaccaatcaaatgggggtttcaaggagattgatcaagttgttgtggacaggaacgctgtgagggggatgaacataaagggcacaattggaaggagaactgtgcaaggcaatggaacctcatggaatatagactttaacccaattcttctatttcctaatcttattaggcatgtgcagtactctttgagcactggtgctagaaatgtgttccccaaccatgccctgaggaatgtatcagataatcgggtcgtgattgagtcagatgtggcggttccagcttcggtttttgtgacagtggatcaaggaatgtcaagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016043 GO:0016787 GO:0016798 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0034293 GO:0043062 GO:0043934 GO:0044085 GO:0044703 GO:0045229 GO:0048229 GO:0048236 GO:0048646 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0071840 GO:0085029 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pectate_lyase_3

Protein Analysis

356

Amino Acids

38.45

Weight (kDa)

5.9

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	347, 440
AciI	CCGC	6 cut(s)	345, 347, 351, 438, 440, 1022
AclI	AACGTT	1 cut(s)	14
AclWI	GGATC	2 cut(s)	572, 1059
AcoI	YGGCCR	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	5 cut(s)	50, 164, 489, 725, 932
AfiI	CCNNNNNNNGG	2 cut(s)	44, 315
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	5 cut(s)	271, 667, 740, 749, 775
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	6 cut(s)	114, 136, 619, 636, 1031, 1068
AluI	AGCT	6 cut(s)	114, 136, 619, 636, 1031, 1068
Alw21I	GWGCWC	2 cut(s)	116, 944
AlwI	GGATC	2 cut(s)	572, 1059
AoxI	GGCC	4 cut(s)	21, 298, 331, 504
Asp700I	GAANNNNTTC	3 cut(s)	323, 373, 744
AspA2I	CCTAGG	1 cut(s)	328
AspS9I	GGNCC	3 cut(s)	21, 464, 754
AsuHPI	GGTGA	4 cut(s)	334, 365, 439, 659
AvaII	GGWCC	2 cut(s)	464, 754
AvrII	CCTAGG	1 cut(s)	328
AxyI	CCTNAGG	1 cut(s)	977
BaeGI	GKGCMC	1 cut(s)	836
BalI	TGGCCA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	2 cut(s)	116, 944
BccI	CCATC	2 cut(s)	38, 272
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	2 cut(s)	355, 784
BfaI	CTAG	5 cut(s)	188, 287, 329, 561, 951
BfmI	CTRYAG	2 cut(s)	199, 444
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	1 cut(s)	441
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	442
BmcAI	AGTACT	1 cut(s)	932
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	464, 754
BmgT120I	GGNCC	3 cut(s)	21, 464, 754
BmiI	GGNNCC	3 cut(s)	465, 868, 1026
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	2 cut(s)	605, 729
BmsI	GCATC	1 cut(s)	640
BmuI	ACTGGG	2 cut(s)	605, 729
BpiI	GAAGAC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	4 cut(s)	328, 345, 438, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 315
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	4 cut(s)	595, 611, 724, 949
Bse21I	CCTNAGG	1 cut(s)	977
Bse3DI	GCAATG	2 cut(s)	490, 868
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	328, 345, 438, 643
BseGI	GGATG	3 cut(s)	80, 146, 825
BseLI	CCNNNNNNNGG	2 cut(s)	44, 315
BseMI	GCAATG	2 cut(s)	490, 868
BseMII	CTCAG	3 cut(s)	39, 247, 968
BseNI	ACTGG	4 cut(s)	595, 611, 724, 949
BseSI	GKGCMC	1 cut(s)	836
BsgI	GTGCAG	2 cut(s)	114, 947
Bsh1236I	CGCG	2 cut(s)	347, 440
BshFI	GGCC	4 cut(s)	23, 300, 333, 506
BsiHKAI	GWGCWC	2 cut(s)	116, 944
BsiSI	CCGG	2 cut(s)	378, 467
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	44, 315
BsmFI	GGGAC	1 cut(s)	477
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	23, 300, 333, 506
Bsp1286I	GDGCHC	3 cut(s)	116, 836, 944
Bsp1407I	TGTACA	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	355, 564, 784, 1051
BspACI	CCGC	6 cut(s)	345, 347, 351, 438, 440, 1022
BspANI	GGCC	4 cut(s)	23, 300, 333, 506
BspCNI	CTCAG	3 cut(s)	38, 246, 969
BspFNI	CGCG	2 cut(s)	347, 440
BspLI	GGNNCC	3 cut(s)	465, 868, 1026
BspPI	GGATC	2 cut(s)	572, 1059
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	490, 868
BsrFI	RCCGGY	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	487
BsrI	ACTGG	4 cut(s)	595, 611, 724, 949
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	328, 345, 438, 643
BssMI	GATC	4 cut(s)	355, 564, 784, 1051
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	328, 643
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	853, 1048
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	335, 349
BstDEI	CTNAG	3 cut(s)	25, 233, 977
BstDSI	CCRYGG	2 cut(s)	345, 438
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	80, 146, 825
BstFNI	CGCG	2 cut(s)	347, 440
BstKTI	GATC	4 cut(s)	358, 567, 787, 1054
BstMBI	GATC	4 cut(s)	355, 564, 784, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	1028
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	715, 926
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	2 cut(s)	199, 444
BstSLI	GKGCMC	1 cut(s)	836
BstUI	CGCG	2 cut(s)	347, 440
BstV2I	GAAGAC	1 cut(s)	612
BstXI	CCANNNNNNTGG	1 cut(s)	764
Bsu36I	CCTNAGG	1 cut(s)	977
BsuRI	GGCC	4 cut(s)	23, 300, 333, 506
BtgI	CCRYGG	2 cut(s)	345, 438
BtsCI	GGATG	3 cut(s)	80, 146, 825
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	5 cut(s)	381, 588, 717, 942, 1053
Cac8I	GCNNGC	2 cut(s)	335, 349
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	3 cut(s)	21, 464, 754
Cfr42I	CCGCGG	2 cut(s)	348, 441
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	5 cut(s)	49, 163, 488, 724, 931
CviAII	CATG	7 cut(s)	5, 302, 580, 712, 873, 923, 971
CviQI	GTAC	5 cut(s)	49, 163, 488, 724, 931
DdeI	CTNAG	3 cut(s)	25, 233, 977
DpnI	GATC	4 cut(s)	357, 566, 786, 1053
DpnII	GATC	4 cut(s)	355, 564, 784, 1051
EaeI	YGGCCR	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	328, 643
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	464, 754
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	624
Eco81I	CCTNAGG	1 cut(s)	977
EcoICRI	GAGCTC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	328, 643
EcoT22I	ATGCAT	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	328, 643
FaeI	CATG	7 cut(s)	8, 305, 583, 715, 876, 926, 974
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	7 cut(s)	4, 301, 579, 711, 872, 922, 970
FauI	CCCGC	1 cut(s)	340
FbaI	TGATCA	2 cut(s)	355, 784
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	3 cut(s)	67, 133, 832
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	5 cut(s)	188, 287, 329, 561, 951
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	23, 300, 333, 506
HapII	CCGG	2 cut(s)	378, 467
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	7 cut(s)	8, 305, 583, 715, 876, 926, 974
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	1 cut(s)	1010
HpaI	GTTAAC	1 cut(s)	706
HpaII	CCGG	2 cut(s)	378, 467
HphI	GGTGA	4 cut(s)	334, 365, 439, 659
Hpy166II	GTNNAC	4 cut(s)	488, 706, 717, 799
Hpy188I	TCNGA	5 cut(s)	28, 236, 518, 991, 1015
Hpy188III	TCNNGA	5 cut(s)	37, 316, 359, 462, 1003
Hpy8I	GTNNAC	4 cut(s)	488, 706, 717, 799
HpyAV	CCTTC	2 cut(s)	334, 837
HpyCH4III	ACNGT	2 cut(s)	853, 1048
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	131, 386, 653, 856, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1028
HpyF3I	CTNAG	3 cut(s)	25, 233, 977
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	7 cut(s)	8, 305, 583, 715, 876, 926, 974
Ksp22I	TGATCA	2 cut(s)	355, 784
KspAI	GTTAAC	1 cut(s)	706
KspI	CCGCGG	2 cut(s)	348, 441
Kzo9I	GATC	4 cut(s)	355, 564, 784, 1051
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	5 cut(s)	188, 287, 329, 561, 951
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	415, 1042
MalI	GATC	4 cut(s)	357, 566, 786, 1053
MboI	GATC	4 cut(s)	355, 564, 784, 1051
MboII	GAAGA	5 cut(s)	132, 374, 617, 631, 890
MfeI	CAATTG	3 cut(s)	250, 749, 837
MhlI	GDGCHC	3 cut(s)	116, 836, 944
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	6 cut(s)	250, 571, 741, 749, 837, 894
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	8 cut(s)	12, 34, 94, 197, 512, 807, 880, 972
Mox20I	TGGCCA	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	655
MroXI	GAANNNNTTC	3 cut(s)	323, 373, 744
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	4 cut(s)	396, 696, 705, 888
Msp20I	TGGCCA	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	347, 440
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	2 cut(s)	378, 467
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	3 cut(s)	250, 749, 837
Mva1269I	GAATGC	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	2 cut(s)	347, 440
MwoI	GCNNNNNNNGC	1 cut(s)	1028
NdeII	GATC	4 cut(s)	355, 564, 784, 1051
NlaIII	CATG	7 cut(s)	8, 305, 583, 715, 876, 926, 974
NlaIV	GGNNCC	3 cut(s)	465, 868, 1026
NmuCI	GTSAC	2 cut(s)	415, 1042
NsiI	ATGCAT	1 cut(s)	655
NspI	RCATGY	2 cut(s)	715, 926
PciI	ACATGT	1 cut(s)	711
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	3 cut(s)	323, 373, 744
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	1018
PpsI	GAGTC	1 cut(s)	1018
PscI	ACATGT	1 cut(s)	711
Psp124BI	GAGCTC	1 cut(s)	116
Psp1406I	AACGTT	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	465, 868, 1026
PspPI	GGNCC	3 cut(s)	21, 464, 754
RsaI	GTAC	5 cut(s)	50, 164, 489, 725, 932
RsaNI	GTAC	5 cut(s)	49, 163, 488, 724, 931
SacI	GAGCTC	1 cut(s)	116
SacII	CCGCGG	2 cut(s)	348, 441
SaqAI	TTAA	4 cut(s)	396, 696, 705, 888
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	4 cut(s)	355, 564, 784, 1051
Sau96I	GGNCC	3 cut(s)	21, 464, 754
ScaI	AGTACT	1 cut(s)	932
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	3 cut(s)	116, 836, 944
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	2 cut(s)	199, 444
Sfr303I	CCGCGG	2 cut(s)	348, 441
SgrBI	CCGCGG	2 cut(s)	348, 441
SinI	GGWCC	2 cut(s)	464, 754
SmlI	CTYRAG	2 cut(s)	395, 535
SmoI	CTYRAG	2 cut(s)	395, 535
Sse9I	AATT	6 cut(s)	250, 571, 741, 749, 837, 894
SsiI	CCGC	6 cut(s)	345, 347, 351, 438, 440, 1022
SspMI	CTAG	5 cut(s)	188, 287, 329, 561, 951
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	2 cut(s)	328, 643
TaaI	ACNGT	2 cut(s)	853, 1048
TaiI	ACGT	1 cut(s)	17
TasI	AATT	6 cut(s)	250, 571, 741, 749, 837, 894
TatI	WGTACW	3 cut(s)	162, 487, 930
TauI	GCSGC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	396, 696, 705, 888
Tru9I	TTAA	4 cut(s)	396, 696, 705, 888
TscAI	CASTG	5 cut(s)	388, 595, 724, 949, 1053
TseFI	GTSAC	2 cut(s)	415, 1042
Tsp45I	GTSAC	2 cut(s)	415, 1042
TspDTI	ATGAA	5 cut(s)	60, 111, 132, 318, 836
TspRI	CASTG	5 cut(s)	388, 595, 724, 949, 1053
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	2 cut(s)	464, 754
XagI	CCTNNNNNAGG	1 cut(s)	313
XceI	RCATGY	2 cut(s)	715, 926
XmaJI	CCTAGG	1 cut(s)	328
XmnI	GAANNNNTTC	3 cut(s)	323, 373, 744
XspI	CTAG	5 cut(s)	188, 287, 329, 561, 951
ZrmI	AGTACT	1 cut(s)	932
Zsp2I	ATGCAT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.