Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002395

Physical Location & Seq

Genomic Coordinates Forward (+)

6522909 .. 6524741

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGCTGCCCAGAAATGCCATGTCTTTGAAGCTGTTAATGGCGTTTATGTATGTAAGCGCAATCGTTAATCATGTAGAAGGCTCGTACTCAGGTACAAACACCGGTACTTACCATGACCAGATGAGGCGCATGGCTTTGATGAAGGCATCGCATACCATCCGCAATAAGGCCTCAACAACCCAAAGCTATTCAACACCAACTCTATATGCATCCGCAGAATCACGTGTACATCACGTGACTGAGTATGGTGCTGACCCAACCGGAAGATCAGACAGCACAGAGGCACTACAGCAAGCTATTTTACATGCCTTTGGATCTCCTCTTGATGGTCACTTGATCAAGGGTGTTGCTGACCTTGGAGGCACTCAAGTTCACCTTGATGGAGGGACATACAAGATCAGCCGTCCGCTGCTCTTACCAGATACCGGTGGTGGAAACTTTATGATTCATGGTGGATCTCTTCATGCATCCGATGATTTCCCAACCGATCGCCATCTGATCGAGCTACGGTCACCGTCAACTTCTCTTGTGTACGAAGATATAACGCTCAAGGATCTCATGATAAACTCAAATTTCAGAGGTGGTGGAATTTCGATTATCAATTCACTAAGGACTACCATTGACAATTGTTACATTTCACATTTCACAAGTGATGGTATATTAATTCACGGCGGCCATGAAACCTATGTTAGAAACTCCTTTATTGGTCAGCACATCAATATCGGAGGCGATCACCGTGAAAAGGATTTTTCCGGCATCGGAATTAACATCATAGGAAACGATAACGCAATCACTGATGTGGTTATTTTCTCAGCATCAATTGGTATAATGGTACAAGGGCAAGCCAACGTGTTCACCGGAGTACATTGTTACAACAAGGCCACTGGATGGGGTGGGACTGGAATTTACATTCGGGCACCTGGGTTGACCCAAACCCGAATCCTGAATTCCTATTTTGATTTCACGGGAATCGTGGCAGAGGACCCGGTCGAACTCCATATATCCGGGTCATTCTTCCTTGGCAATGCCTTTATTTCGATCAAATCATTGAAGGGTGTGGCATGTGGCATCACCATCGTTGATAATATGTTTTCAGGTGATTATACCGGTGTCCCAATAGTCCATCTAGATCAATCCAACGGTCGATATTTTACTACTATTGATCAAATTATGGTTGATCGAAATGTCGTGCGGGGTATGGTTCATAAATCAACGGTTGCCAAGGGGTCAGTTTGGAGTAATGGGACTAGATGGACCGTTGATTTCTCACACGTTCTCCTTTTCCCTAATCTCATACAAAATGTGCAGTACACATTGCAGGCAAGTGAGTCATTTCCAAAACATGTCCTACGAAATGTGTCGAGGAATTGTGTCACAGTAGAATCAGACGTACCCGTTTCTGCCACGTTGCATGTGTTAGTGGATCAGAGCATGATGGGTTACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beta_helix Pectate_lyase_3

Protein Analysis

483

Amino Acids

52.49

Weight (kDa)

6.43

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002395)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050
fragaria_vesca	FvH4_3g12840 FvH4_6g36530
malus_domestica	MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1
prunus_persica	Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1
pyrus_communis	pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190
rosa_chinensis	RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781
rosa_laevigata	RLG00000020361 RLG00000032562
rosa_multiflora	Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007
rosa_roxburghii	Rroxscaffold_1G00057520 Rroxscaffold_2G00098530
rosa_rugosa	Rorug02G0408600 Rorug05G0062800 Rorug05G0062900
rosa_samantha	Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000
rosa_wichuraiana	Rw2G038110 Rw5G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	916
AccB7I	CCANNNNNTGG	1 cut(s)	888
AciI	CCGC	5 cut(s)	160, 213, 407, 672, 1192
AclWI	GGATC	4 cut(s)	322, 463, 561, 1431
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	4 cut(s)	571, 588, 903, 946
AcvI	CACGTG	2 cut(s)	224, 235
AfaI	GTAC	9 cut(s)	86, 94, 106, 228, 533, 834, 864, 1310, 1392
AfiI	CCNNNNNNNGG	5 cut(s)	166, 326, 425, 742, 888
AflIII	ACRYGT	4 cut(s)	223, 849, 1270, 1342
AgeI	ACCGGT	3 cut(s)	101, 425, 1106
AgsI	TTSAA	3 cut(s)	28, 192, 1051
AjnI	CCWGG	1 cut(s)	919
AleI	CACNNNNGTG	1 cut(s)	797
AluBI	AGCT	4 cut(s)	31, 186, 296, 505
AluI	AGCT	4 cut(s)	31, 186, 296, 505
AlwI	GGATC	4 cut(s)	322, 463, 561, 1431
AoxI	GGCC	3 cut(s)	168, 673, 879
ApeKI	GCWGC	2 cut(s)	4, 409
ApoI	RAATTY	4 cut(s)	571, 588, 903, 946
AseI	ATTAAT	1 cut(s)	662
AsiGI	ACCGGT	3 cut(s)	101, 425, 1106
AspLEI	GCGC	2 cut(s)	59, 129
AspS9I	GGNCC	2 cut(s)	982, 1254
AsuC2I	CCSGG	2 cut(s)	986, 1006
AsuHPI	GGTGA	6 cut(s)	365, 504, 725, 847, 1063, 1109
AvaII	GGWCC	2 cut(s)	982, 1254
BaeGI	GKGCMC	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	916
BbrPI	CACGTG	2 cut(s)	224, 235
BbvI	GCAGC	1 cut(s)	396
BceAI	ACGGC	2 cut(s)	387, 685
BcgI	CGANNNNNNTGC	2 cut(s)	1057, 1091
BciT130I	CCWGG	1 cut(s)	921
BclI	TGATCA	2 cut(s)	336, 1162
BcnI	CCSGG	2 cut(s)	986, 1006
BfaI	CTAG	2 cut(s)	1127, 1248
BfmI	CTRYAG	1 cut(s)	287
BisI	GCNGC	3 cut(s)	5, 410, 673
BlsI	GCNGC	3 cut(s)	6, 411, 674
Bme1390I	CCNGG	3 cut(s)	921, 986, 1006
Bme18I	GGWCC	2 cut(s)	982, 1254
BmgT120I	GGNCC	2 cut(s)	982, 1254
BmiI	GGNNCC	2 cut(s)	918, 984
BmrFI	CCNGG	3 cut(s)	921, 986, 1006
BmsI	GCATC	6 cut(s)	155, 218, 476, 765, 824, 1077
BpuEI	CTTGAG	2 cut(s)	351, 533
BpuMI	CCSGG	2 cut(s)	986, 1006
BsaAI	YACGTR	3 cut(s)	224, 235, 1444
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	355, 920, 1018, 1221
BsaWI	WCCGGW	5 cut(s)	101, 260, 425, 857, 1106
BsaXI	ACNNNNNCTCC	2 cut(s)	1260, 1290
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 326, 425, 742, 888
Bse118I	RCCGGY	3 cut(s)	101, 425, 1106
Bse1I	ACTGG	2 cut(s)	889, 904
Bse3DI	GCAATG	2 cut(s)	1030, 1313
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	921
BseDI	CCNNGG	4 cut(s)	355, 920, 1018, 1221
BseGI	GGATG	4 cut(s)	156, 209, 467, 893
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	5 cut(s)	166, 326, 425, 742, 888
BseMI	GCAATG	2 cut(s)	1030, 1313
BseMII	CTCAG	3 cut(s)	102, 231, 825
BseNI	ACTGG	2 cut(s)	889, 904
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	1325
Bsh1285I	CGRYCG	3 cut(s)	490, 990, 1144
BshFI	GGCC	3 cut(s)	170, 675, 881
BshNI	GGYRCC	1 cut(s)	916
BshTI	ACCGGT	3 cut(s)	101, 425, 1106
BsiEI	CGRYCG	3 cut(s)	490, 990, 1144
BsiSI	CCGG	8 cut(s)	102, 261, 426, 753, 858, 986, 1005, 1107
BslFI	GGGAC	4 cut(s)	400, 910, 1097, 1258
BslI	CCNNNNNNNGG	5 cut(s)	166, 326, 425, 742, 888
BsmFI	GGGAC	4 cut(s)	400, 910, 1097, 1258
BsnI	GGCC	3 cut(s)	170, 675, 881
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp1407I	TGTACA	1 cut(s)	226
BspACI	CCGC	5 cut(s)	160, 213, 407, 672, 1192
BspANI	GGCC	3 cut(s)	170, 675, 881
BspCNI	CTCAG	3 cut(s)	101, 232, 824
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	918, 984
BspPI	GGATC	4 cut(s)	322, 463, 561, 1431
BspT107I	GGYRCC	1 cut(s)	916
BsrDI	GCAATG	2 cut(s)	1030, 1313
BsrFI	RCCGGY	3 cut(s)	101, 425, 1106
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	889, 904
BssAI	RCCGGY	3 cut(s)	101, 425, 1106
BssECI	CCNNGG	4 cut(s)	355, 920, 1018, 1221
BssT1I	CCWWGG	3 cut(s)	355, 1018, 1221
Bst2UI	CCWGG	1 cut(s)	921
Bst4CI	ACNGT	7 cut(s)	510, 516, 737, 1142, 1216, 1258, 1378
Bst6I	CTCTTC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	226
BstBAI	YACGTR	3 cut(s)	224, 235, 1444
BstC8I	GCNNGC	3 cut(s)	294, 843, 1320
BstDEI	CTNAG	4 cut(s)	88, 240, 608, 811
BstEII	GGTNACC	1 cut(s)	510
BstF5I	GGATG	4 cut(s)	156, 209, 467, 893
BstHHI	GCGC	2 cut(s)	59, 129
BstMCI	CGRYCG	3 cut(s)	490, 990, 1144
BstNI	CCWGG	1 cut(s)	921
BstNSI	RCATGY	4 cut(s)	308, 1065, 1346, 1415
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	919, 984, 1004
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	919
BstSNI	TACGTA	1 cut(s)	1444
BstV1I	GCAGC	1 cut(s)	396
BstX2I	RGATCY	3 cut(s)	314, 455, 553
BstYI	RGATCY	3 cut(s)	314, 455, 553
BsuRI	GGCC	3 cut(s)	170, 675, 881
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	4 cut(s)	156, 209, 467, 893
BtsIMutI	CAGTG	2 cut(s)	792, 882
Cac8I	GCNNGC	3 cut(s)	294, 843, 1320
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	59, 129
Cfr10I	RCCGGY	3 cut(s)	101, 425, 1106
Cfr13I	GGNCC	2 cut(s)	982, 1254
Csp6I	GTAC	9 cut(s)	85, 93, 105, 227, 532, 833, 863, 1309, 1391
CspAI	ACCGGT	3 cut(s)	101, 425, 1106
CviQI	GTAC	9 cut(s)	85, 93, 105, 227, 532, 833, 863, 1309, 1391
DdeI	CTNAG	4 cut(s)	88, 240, 608, 811
EaeI	YGGCCR	1 cut(s)	673
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco105I	TACGTA	1 cut(s)	1444
Eco130I	CCWWGG	3 cut(s)	355, 1018, 1221
Eco147I	AGGCCT	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	982, 1254
Eco72I	CACGTG	2 cut(s)	224, 235
Eco91I	GGTNACC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	982
EcoO65I	GGTNACC	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	946
EcoRII	CCWGG	1 cut(s)	919
EcoT14I	CCWWGG	3 cut(s)	355, 1018, 1221
EcoT22I	ATGCAT	2 cut(s)	211, 469
ErhI	CCWWGG	3 cut(s)	355, 1018, 1221
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	4 cut(s)	400, 910, 1097, 1258
FauI	CCCGC	1 cut(s)	1185
FbaI	TGATCA	2 cut(s)	336, 1162
Fnu4HI	GCNGC	3 cut(s)	5, 410, 673
FokI	GGATG	4 cut(s)	143, 196, 454, 900
Fsp4HI	GCNGC	3 cut(s)	5, 410, 673
FspBI	CTAG	2 cut(s)	1127, 1248
GlaI	GCGC	2 cut(s)	58, 128
GluI	GCNGC	3 cut(s)	5, 410, 673
HaeIII	GGCC	3 cut(s)	170, 675, 881
HapII	CCGG	8 cut(s)	102, 261, 426, 753, 858, 986, 1005, 1107
HhaI	GCGC	2 cut(s)	59, 129
Hin6I	GCGC	2 cut(s)	57, 127
HinP1I	GCGC	2 cut(s)	57, 127
HincII	GTYRAC	2 cut(s)	519, 927
HindII	GTYRAC	2 cut(s)	519, 927
HinfI	GANTC	6 cut(s)	218, 445, 939, 969, 1328, 1382
HpaII	CCGG	8 cut(s)	102, 261, 426, 753, 858, 986, 1005, 1107
HphI	GGTGA	6 cut(s)	365, 504, 725, 847, 1063, 1109
Hpy166II	GTNNAC	7 cut(s)	227, 373, 519, 532, 855, 927, 1311
Hpy188I	TCNGA	8 cut(s)	271, 472, 498, 578, 725, 761, 1387, 1428
Hpy188III	TCNNGA	4 cut(s)	323, 559, 943, 1127
Hpy8I	GTNNAC	7 cut(s)	227, 373, 519, 532, 855, 927, 1311
HpyAV	CCTTC	3 cut(s)	71, 136, 1045
HpyCH4III	ACNGT	7 cut(s)	510, 516, 737, 1142, 1216, 1258, 1378
HpyCH4IV	ACGT	7 cut(s)	223, 234, 849, 1272, 1389, 1406, 1443
HpyCH4V	TGCA	5 cut(s)	209, 467, 1306, 1318, 1411
HpyF3I	CTNAG	4 cut(s)	88, 240, 608, 811
HpySE526I	ACGT	7 cut(s)	223, 234, 849, 1272, 1389, 1406, 1443
HspAI	GCGC	2 cut(s)	57, 127
Ksp22I	TGATCA	2 cut(s)	336, 1162
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	6 cut(s)	155, 218, 476, 765, 824, 1077
MaeI	CTAG	2 cut(s)	1127, 1248
MaeII	ACGT	7 cut(s)	223, 234, 849, 1272, 1389, 1406, 1443
MaeIII	GTNAC	7 cut(s)	235, 329, 510, 629, 869, 1372, 1439
MboII	GAAGA	4 cut(s)	276, 452, 548, 1006
MfeI	CAATTG	2 cut(s)	625, 819
MflI	RGATCY	3 cut(s)	314, 455, 553
MhlI	GDGCHC	1 cut(s)	919
MlyI	GAGTC	1 cut(s)	1337
MmeI	TCCRAC	1 cut(s)	1161
Mph1103I	ATGCAT	2 cut(s)	211, 469
MseI	TTAA	4 cut(s)	35, 66, 662, 765
MslI	CAYNNNNRTG	2 cut(s)	378, 797
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	8 cut(s)	102, 261, 426, 753, 858, 986, 1005, 1107
MspR9I	CCNGG	3 cut(s)	921, 986, 1006
MunI	CAATTG	2 cut(s)	625, 819
MvaI	CCWGG	1 cut(s)	921
NciI	CCSGG	2 cut(s)	986, 1006
NlaIV	GGNNCC	2 cut(s)	918, 984
NmuCI	GTSAC	4 cut(s)	235, 329, 510, 1372
NsiI	ATGCAT	2 cut(s)	211, 469
NspI	RCATGY	4 cut(s)	308, 1065, 1346, 1415
OliI	CACNNNNGTG	1 cut(s)	797
PagI	TCATGA	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	1342
PfeI	GAWTC	5 cut(s)	218, 445, 939, 969, 1382
PflFI	GACNNNGTC	1 cut(s)	986
PflMI	CCANNNNNTGG	1 cut(s)	888
PinAI	ACCGGT	3 cut(s)	101, 425, 1106
PkrI	GCNGC	3 cut(s)	6, 411, 674
Ple19I	CGATCG	1 cut(s)	490
PleI	GAGTC	1 cut(s)	1336
PmaCI	CACGTG	2 cut(s)	224, 235
PmlI	CACGTG	2 cut(s)	224, 235
PpsI	GAGTC	1 cut(s)	1336
Ppu21I	YACGTR	3 cut(s)	224, 235, 1444
PpuMI	RGGWCCY	1 cut(s)	982
PscI	ACATGT	1 cut(s)	1342
PshBI	ATTAAT	1 cut(s)	662
Psp5II	RGGWCCY	1 cut(s)	982
Psp6I	CCWGG	1 cut(s)	919
PspCI	CACGTG	2 cut(s)	224, 235
PspEI	GGTNACC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	919
PspN4I	GGNNCC	2 cut(s)	918, 984
PspPI	GGNCC	2 cut(s)	982, 1254
PspPPI	RGGWCCY	1 cut(s)	982
PsuI	RGATCY	3 cut(s)	314, 455, 553
PsyI	GACNNNGTC	1 cut(s)	986
PvuI	CGATCG	1 cut(s)	490
RsaI	GTAC	9 cut(s)	86, 94, 106, 228, 533, 834, 864, 1310, 1392
RsaNI	GTAC	9 cut(s)	85, 93, 105, 227, 532, 833, 863, 1309, 1391
RseI	CAYNNNNRTG	2 cut(s)	378, 797
SaqAI	TTAA	4 cut(s)	35, 66, 662, 765
SatI	GCNGC	3 cut(s)	5, 410, 673
Sau96I	GGNCC	2 cut(s)	982, 1254
SchI	GAGTC	1 cut(s)	1337
ScrFI	CCNGG	3 cut(s)	921, 986, 1006
SduI	GDGCHC	1 cut(s)	919
SfaNI	GCATC	6 cut(s)	155, 218, 476, 765, 824, 1077
SfcI	CTRYAG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	982, 1254
SmiMI	CAYNNNNRTG	2 cut(s)	378, 797
SmlI	CTYRAG	2 cut(s)	366, 548
SmoI	CTYRAG	2 cut(s)	366, 548
SnaBI	TACGTA	1 cut(s)	1444
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	5 cut(s)	160, 213, 407, 672, 1192
SspMI	CTAG	2 cut(s)	1127, 1248
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	919, 984, 1004
StyI	CCWWGG	3 cut(s)	355, 1018, 1221
TaaI	ACNGT	7 cut(s)	510, 516, 737, 1142, 1216, 1258, 1378
TaiI	ACGT	7 cut(s)	226, 237, 852, 1275, 1392, 1409, 1446
TaqI	TCGA	7 cut(s)	501, 593, 990, 1037, 1144, 1180, 1361
TatI	WGTACW	3 cut(s)	226, 862, 1308
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	5 cut(s)	218, 445, 939, 969, 1382
Tru1I	TTAA	4 cut(s)	35, 66, 662, 765
Tru9I	TTAA	4 cut(s)	35, 66, 662, 765
TscAI	CASTG	2 cut(s)	799, 889
TseFI	GTSAC	4 cut(s)	235, 329, 510, 1372
TseI	GCWGC	2 cut(s)	4, 409
Tsp45I	GTSAC	4 cut(s)	235, 329, 510, 1372
TspDTI	ATGAA	5 cut(s)	155, 437, 452, 693, 1193
TspRI	CASTG	2 cut(s)	799, 889
Tth111I	GACNNNGTC	1 cut(s)	986
Van91I	CCANNNNNTGG	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	982, 1254
VspI	ATTAAT	1 cut(s)	662
XapI	RAATTY	4 cut(s)	571, 588, 903, 946
XbaI	TCTAGA	1 cut(s)	1126
XceI	RCATGY	4 cut(s)	308, 1065, 1346, 1415
XspI	CTAG	2 cut(s)	1127, 1248
Zsp2I	ATGCAT	2 cut(s)	211, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.