Parallel beta-helix repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 AT4G20050 |
| fragaria_vesca | FvH4_3g12840 FvH4_6g36530 |
| malus_domestica | MD05G1247500.v1.1 MD09G1167600.v1.1 MD10G1228300.v1.1 |
| prunus_persica | Prupe.3G025600_v2.0.a1 Prupe.4G116600_v2.0.a1 |
| pyrus_communis | pycom05g22350 pycom05g22360 pycom09g08510 pycom10g19190 |
| rosa_chinensis | RchiOBHm_Chr2g0148991 RchiOBHm_Chr5g0020781 |
| rosa_laevigata | RLG00000020361 RLG00000032562 |
| rosa_multiflora | Rmu_co8368081.1_g000001 Rmu_co8378405.1_g000001 Rmu_sc0001397.1_g000010 Rmu_sc0002527.1_g000006 Rmu_sc0002527.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00057520 Rroxscaffold_2G00098530 |
| rosa_rugosa | Rorug02G0408600 Rorug05G0062800 Rorug05G0062900 |
| rosa_samantha | Rh2AG467800 Rh2BG480400 Rh2CG454200 Rh2DG489300 Rh5AG152800 Rh5BG152500 Rh5CG164100 Rh5DG152000 |
| rosa_wichuraiana | Rw2G038110 Rw5G013550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 443 |
| AatII | GACGTC | 1 cut(s) | 1253 |
| AccB1I | GGYRCC | 3 cut(s) | 245, 425, 761 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 323 |
| AccII | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| AccIII | TCCGGA | 1 cut(s) | 612 |
| AciI | CCGC | 9 cut(s) | 218, 447, 580, 582, 585, 726, 765, 819, 983 |
| AclI | AACGTT | 1 cut(s) | 1365 |
| AclWI | GGATC | 4 cut(s) | 245, 833, 983, 1143 |
| AcoI | YGGCCR | 2 cut(s) | 24, 1165 |
| AcsI | RAATTY | 1 cut(s) | 952 |
| AcvI | CACGTG | 1 cut(s) | 1306 |
| AcyI | GRCGYC | 2 cut(s) | 426, 1250 |
| AfaI | GTAC | 5 cut(s) | 210, 227, 454, 491, 1313 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 422, 1409 |
| AgeI | ACCGGT | 2 cut(s) | 890, 971 |
| AgsI | TTSAA | 4 cut(s) | 99, 377, 1048, 1130 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 514 |
| AjnI | CCWGG | 2 cut(s) | 821, 1167 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 944, 976 |
| AleI | CACNNNNGTG | 1 cut(s) | 1319 |
| AluBI | AGCT | 7 cut(s) | 7, 146, 293, 387, 753, 851, 1334 |
| AluI | AGCT | 7 cut(s) | 7, 146, 293, 387, 753, 851, 1334 |
| Alw26I | GTCTC | 4 cut(s) | 645, 680, 729, 1385 |
| AlwI | GGATC | 4 cut(s) | 245, 833, 983, 1143 |
| Aor13HI | TCCGGA | 1 cut(s) | 612 |
| AoxI | GGCC | 3 cut(s) | 24, 204, 1165 |
| ApoI | RAATTY | 1 cut(s) | 952 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1006, 1038 |
| AsiGI | ACCGGT | 2 cut(s) | 890, 971 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 754 |
| AspLEI | GCGC | 3 cut(s) | 222, 428, 1357 |
| AspS9I | GGNCC | 4 cut(s) | 215, 314, 1117, 1257 |
| AsuC2I | CCSGG | 8 cut(s) | 213, 479, 907, 927, 1102, 1274, 1289, 1379 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| AsuII | TTCGAA | 1 cut(s) | 537 |
| AvaII | GGWCC | 4 cut(s) | 215, 314, 1117, 1257 |
| AxyI | CCTNAGG | 1 cut(s) | 201 |
| BalI | TGGCCA | 2 cut(s) | 26, 1167 |
| BanI | GGYRCC | 3 cut(s) | 245, 425, 761 |
| BauI | CACGAG | 1 cut(s) | 683 |
| BbrPI | CACGTG | 1 cut(s) | 1306 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BbvCI | CCTCAGC | 1 cut(s) | 418 |
| BccI | CCATC | 4 cut(s) | 305, 772, 776, 1232 |
| BceAI | ACGGC | 4 cut(s) | 191, 384, 581, 779 |
| BciT130I | CCWGG | 2 cut(s) | 823, 1169 |
| BcnI | CCSGG | 8 cut(s) | 213, 479, 907, 927, 1102, 1274, 1289, 1379 |
| BcoDI | GTCTC | 4 cut(s) | 645, 680, 729, 1385 |
| BfaI | CTAG | 1 cut(s) | 1224 |
| BfoI | RGCGCY | 1 cut(s) | 429 |
| BglII | AGATCT | 1 cut(s) | 556 |
| BisI | GCNGC | 1 cut(s) | 583 |
| BlsI | GCNGC | 1 cut(s) | 584 |
| Bme18I | GGWCC | 4 cut(s) | 215, 314, 1117, 1257 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 4 cut(s) | 215, 314, 1117, 1257 |
| BmiI | GGNNCC | 5 cut(s) | 247, 427, 763, 904, 1118 |
| BmrI | ACTGGG | 1 cut(s) | 1419 |
| BmsI | GCATC | 4 cut(s) | 268, 324, 473, 1021 |
| BmuI | ACTGGG | 1 cut(s) | 1419 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 546, 578 |
| Bpu10I | CCTNAGC | 3 cut(s) | 8, 418, 1358 |
| Bpu14I | TTCGAA | 1 cut(s) | 537 |
| BpuMI | CCSGG | 8 cut(s) | 213, 479, 907, 927, 1102, 1274, 1289, 1379 |
| Bsa29I | ATCGAT | 2 cut(s) | 567, 1052 |
| BsaAI | YACGTR | 1 cut(s) | 1306 |
| BsaHI | GRCGYC | 2 cut(s) | 426, 1250 |
| BsaJI | CCNNGG | 1 cut(s) | 580 |
| BsaWI | WCCGGW | 5 cut(s) | 612, 890, 942, 971, 991 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 822, 852, 1384, 1414 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 202, 323, 422, 1409 |
| Bse118I | RCCGGY | 5 cut(s) | 169, 422, 728, 890, 971 |
| Bse1I | ACTGG | 1 cut(s) | 1414 |
| Bse21I | CCTNAGG | 1 cut(s) | 201 |
| Bse3DI | GCAATG | 1 cut(s) | 871 |
| BseAI | TCCGGA | 1 cut(s) | 612 |
| BseBI | CCWGG | 2 cut(s) | 823, 1169 |
| BseCI | ATCGAT | 2 cut(s) | 567, 1052 |
| BseDI | CCNNGG | 1 cut(s) | 580 |
| BseGI | GGATG | 1 cut(s) | 283 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 422, 1409 |
| BseMI | GCAATG | 1 cut(s) | 871 |
| BseMII | CTCAG | 4 cut(s) | 215, 432, 565, 950 |
| BseNI | ACTGG | 1 cut(s) | 1414 |
| BseRI | GAGGAG | 5 cut(s) | 174, 177, 189, 372, 756 |
| BsgI | GTGCAG | 2 cut(s) | 1328, 1334 |
| Bsh1236I | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| Bsh1285I | CGRYCG | 1 cut(s) | 483 |
| BshFI | GGCC | 3 cut(s) | 26, 206, 1167 |
| BshNI | GGYRCC | 3 cut(s) | 245, 425, 761 |
| BshTI | ACCGGT | 2 cut(s) | 890, 971 |
| BshVI | ATCGAT | 2 cut(s) | 567, 1052 |
| BsiEI | CGRYCG | 1 cut(s) | 483 |
| BslFI | GGGAC | 5 cut(s) | 88, 858, 1027, 1261, 1426 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 202, 323, 422, 1409 |
| BsmAI | GTCTC | 4 cut(s) | 645, 680, 729, 1385 |
| BsmFI | GGGAC | 5 cut(s) | 88, 858, 1027, 1261, 1426 |
| BsnI | GGCC | 3 cut(s) | 26, 206, 1167 |
| Bsp119I | TTCGAA | 1 cut(s) | 537 |
| Bsp13I | TCCGGA | 1 cut(s) | 612 |
| Bsp143I | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| BspACI | CCGC | 9 cut(s) | 218, 447, 580, 582, 585, 726, 765, 819, 983 |
| BspANI | GGCC | 3 cut(s) | 26, 206, 1167 |
| BspCNI | CTCAG | 4 cut(s) | 214, 431, 564, 949 |
| BspDI | ATCGAT | 2 cut(s) | 567, 1052 |
| BspEI | TCCGGA | 1 cut(s) | 612 |
| BspFNI | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| BspHI | TCATGA | 1 cut(s) | 109 |
| BspLI | GGNNCC | 5 cut(s) | 247, 427, 763, 904, 1118 |
| BspPI | GGATC | 4 cut(s) | 245, 833, 983, 1143 |
| BspT104I | TTCGAA | 1 cut(s) | 537 |
| BspT107I | GGYRCC | 3 cut(s) | 245, 425, 761 |
| BsrDI | GCAATG | 1 cut(s) | 871 |
| BsrFI | RCCGGY | 5 cut(s) | 169, 422, 728, 890, 971 |
| BsrI | ACTGG | 1 cut(s) | 1414 |
| BssAI | RCCGGY | 5 cut(s) | 169, 422, 728, 890, 971 |
| BssECI | CCNNGG | 1 cut(s) | 580 |
| BssMI | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| BssNI | GRCGYC | 2 cut(s) | 426, 1250 |
| BssSI | CACGAG | 1 cut(s) | 683 |
| Bst2BI | CACGAG | 1 cut(s) | 683 |
| Bst2UI | CCWGG | 2 cut(s) | 823, 1169 |
| BstACI | GRCGYC | 2 cut(s) | 426, 1250 |
| BstBAI | YACGTR | 1 cut(s) | 1306 |
| BstBI | TTCGAA | 1 cut(s) | 537 |
| BstC8I | GCNNGC | 5 cut(s) | 135, 424, 869, 1336, 1353 |
| BstDEI | CTNAG | 6 cut(s) | 8, 201, 418, 551, 936, 1358 |
| BstDSI | CCRYGG | 1 cut(s) | 580 |
| BstF5I | GGATG | 1 cut(s) | 283 |
| BstFNI | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| BstH2I | RGCGCY | 1 cut(s) | 429 |
| BstHHI | GCGC | 3 cut(s) | 222, 428, 1357 |
| BstKTI | GATC | 8 cut(s) | 115, 253, 352, 373, 559, 828, 991, 1138 |
| BstMAI | GTCTC | 4 cut(s) | 645, 680, 729, 1385 |
| BstMBI | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| BstMCI | CGRYCG | 1 cut(s) | 483 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 143, 579, 759, 873, 1331 |
| BstNI | CCWGG | 2 cut(s) | 823, 1169 |
| BstUI | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BstX2I | RGATCY | 2 cut(s) | 556, 988 |
| BstYI | RGATCY | 2 cut(s) | 556, 988 |
| Bsu15I | ATCGAT | 2 cut(s) | 567, 1052 |
| Bsu36I | CCTNAGG | 1 cut(s) | 201 |
| BsuRI | GGCC | 3 cut(s) | 26, 206, 1167 |
| BsuTUI | ATCGAT | 2 cut(s) | 567, 1052 |
| BtgI | CCRYGG | 1 cut(s) | 580 |
| BtsCI | GGATG | 1 cut(s) | 283 |
| BtsI | GCAGTG | 1 cut(s) | 1146 |
| BtsIMutI | CAGTG | 3 cut(s) | 1146, 1195, 1434 |
| Cac8I | GCNNGC | 5 cut(s) | 135, 424, 869, 1336, 1353 |
| CciI | TCATGA | 1 cut(s) | 109 |
| CfoI | GCGC | 3 cut(s) | 222, 428, 1357 |
| Cfr10I | RCCGGY | 5 cut(s) | 169, 422, 728, 890, 971 |
| Cfr13I | GGNCC | 4 cut(s) | 215, 314, 1117, 1257 |
| Cfr42I | CCGCGG | 1 cut(s) | 583 |
| ClaI | ATCGAT | 2 cut(s) | 567, 1052 |
| CpoI | CGGWCCG | 1 cut(s) | 215 |
| Csp6I | GTAC | 5 cut(s) | 209, 226, 453, 490, 1312 |
| CspAI | ACCGGT | 2 cut(s) | 890, 971 |
| CspI | CGGWCCG | 1 cut(s) | 215 |
| CviAII | CATG | 4 cut(s) | 28, 110, 323, 1112 |
| CviQI | GTAC | 5 cut(s) | 209, 226, 453, 490, 1312 |
| DdeI | CTNAG | 6 cut(s) | 8, 201, 418, 551, 936, 1358 |
| DinI | GGCGCC | 1 cut(s) | 427 |
| DpnI | GATC | 8 cut(s) | 114, 252, 351, 372, 558, 827, 990, 1137 |
| DpnII | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| DriI | GACNNNNNGTC | 1 cut(s) | 514 |
| EaeI | YGGCCR | 2 cut(s) | 24, 1165 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 514 |
| EciI | GGCGGA | 2 cut(s) | 600, 808 |
| Eco32I | GATATC | 1 cut(s) | 237 |
| Eco47I | GGWCC | 4 cut(s) | 215, 314, 1117, 1257 |
| Eco72I | CACGTG | 1 cut(s) | 1306 |
| Eco81I | CCTNAGG | 1 cut(s) | 201 |
| EcoRI | GAATTC | 1 cut(s) | 952 |
| EcoRII | CCWGG | 2 cut(s) | 821, 1167 |
| EcoRV | GATATC | 1 cut(s) | 237 |
| EgeI | GGCGCC | 1 cut(s) | 427 |
| EheI | GGCGCC | 1 cut(s) | 427 |
| FaeI | CATG | 4 cut(s) | 31, 113, 326, 1115 |
| FaqI | GGGAC | 5 cut(s) | 88, 858, 1027, 1261, 1426 |
| FatI | CATG | 4 cut(s) | 27, 109, 322, 1111 |
| FauNDI | CATATG | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 583 |
| FokI | GGATG | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 1 cut(s) | 583 |
| FspBI | CTAG | 1 cut(s) | 1224 |
| GlaI | GCGC | 3 cut(s) | 221, 427, 1356 |
| GluI | GCNGC | 1 cut(s) | 583 |
| HaeII | RGCGCY | 1 cut(s) | 429 |
| HaeIII | GGCC | 3 cut(s) | 26, 206, 1167 |
| HhaI | GCGC | 3 cut(s) | 222, 428, 1357 |
| Hin1I | GRCGYC | 2 cut(s) | 426, 1250 |
| Hin1II | CATG | 4 cut(s) | 31, 113, 326, 1115 |
| Hin6I | GCGC | 3 cut(s) | 220, 426, 1355 |
| HinP1I | GCGC | 3 cut(s) | 220, 426, 1355 |
| HincII | GTYRAC | 3 cut(s) | 716, 1087, 1180 |
| HindII | GTYRAC | 3 cut(s) | 716, 1087, 1180 |
| HindIII | AAGCTT | 2 cut(s) | 144, 751 |
| HinfI | GANTC | 6 cut(s) | 52, 64, 89, 512, 664, 1432 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 7 cut(s) | 226, 680, 716, 1087, 1180, 1195, 1314 |
| Hpy188I | TCNGA | 8 cut(s) | 356, 554, 650, 698, 830, 939, 1140, 1372 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 613, 843, 1120 |
| Hpy8I | GTNNAC | 7 cut(s) | 226, 680, 716, 1087, 1180, 1195, 1314 |
| Hpy99I | CGWCG | 2 cut(s) | 983, 1219 |
| HpyCH4IV | ACGT | 5 cut(s) | 1016, 1161, 1250, 1305, 1365 |
| HpyCH4V | TGCA | 7 cut(s) | 133, 281, 337, 573, 871, 1309, 1351 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 143, 579, 759, 873, 1331 |
| HpyF3I | CTNAG | 6 cut(s) | 8, 201, 418, 551, 936, 1358 |
| HpySE526I | ACGT | 5 cut(s) | 1016, 1161, 1250, 1305, 1365 |
| Hsp92I | GRCGYC | 2 cut(s) | 426, 1250 |
| Hsp92II | CATG | 4 cut(s) | 31, 113, 326, 1115 |
| HspAI | GCGC | 3 cut(s) | 220, 426, 1355 |
| KasI | GGCGCC | 1 cut(s) | 425 |
| Kpn2I | TCCGGA | 1 cut(s) | 612 |
| KroI | GCCGGC | 1 cut(s) | 422 |
| KroNI | GCCGGC | 1 cut(s) | 424 |
| KspI | CCGCGG | 1 cut(s) | 583 |
| Kzo9I | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| LmnI | GCTCC | 4 cut(s) | 4, 359, 587, 1405 |
| LweI | GCATC | 4 cut(s) | 268, 324, 473, 1021 |
| MaeI | CTAG | 1 cut(s) | 1224 |
| MaeII | ACGT | 5 cut(s) | 1016, 1161, 1250, 1305, 1365 |
| MaeIII | GTNAC | 7 cut(s) | 522, 632, 796, 999, 1184, 1405, 1423 |
| MalI | GATC | 8 cut(s) | 114, 252, 351, 372, 558, 827, 990, 1137 |
| MboI | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| MboII | GAAGA | 7 cut(s) | 67, 311, 365, 428, 526, 551, 998 |
| MfeI | CAATTG | 1 cut(s) | 1130 |
| MflI | RGATCY | 2 cut(s) | 556, 988 |
| MlsI | TGGCCA | 2 cut(s) | 26, 1167 |
| MluCI | AATT | 5 cut(s) | 263, 366, 772, 952, 1130 |
| MluNI | TGGCCA | 2 cut(s) | 26, 1167 |
| Mly113I | GGCGCC | 1 cut(s) | 426 |
| MlyI | GAGTC | 2 cut(s) | 61, 73 |
| Mox20I | TGGCCA | 2 cut(s) | 26, 1167 |
| MroI | TCCGGA | 1 cut(s) | 612 |
| MroNI | GCCGGC | 1 cut(s) | 422 |
| MroXI | GAANNNNTTC | 1 cut(s) | 754 |
| MscI | TGGCCA | 2 cut(s) | 26, 1167 |
| MseI | TTAA | 9 cut(s) | 141, 287, 392, 458, 494, 932, 1269, 1295, 1444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1319 |
| Msp20I | TGGCCA | 2 cut(s) | 26, 1167 |
| MspA1I | CMGCKG | 1 cut(s) | 582 |
| MunI | CAATTG | 1 cut(s) | 1130 |
| MvaI | CCWGG | 2 cut(s) | 823, 1169 |
| MvnI | CGCG | 5 cut(s) | 220, 222, 582, 983, 1355 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 143, 579, 759, 873, 1331 |
| NaeI | GCCGGC | 1 cut(s) | 424 |
| NarI | GGCGCC | 1 cut(s) | 426 |
| NciI | CCSGG | 8 cut(s) | 213, 479, 907, 927, 1102, 1274, 1289, 1379 |
| NdeI | CATATG | 1 cut(s) | 241 |
| NdeII | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| NgoMIV | GCCGGC | 1 cut(s) | 422 |
| NlaIII | CATG | 4 cut(s) | 31, 113, 326, 1115 |
| NlaIV | GGNNCC | 5 cut(s) | 247, 427, 763, 904, 1118 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NspV | TTCGAA | 1 cut(s) | 537 |
| OliI | CACNNNNGTG | 1 cut(s) | 1319 |
| PagI | TCATGA | 1 cut(s) | 109 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 792 |
| PdiI | GCCGGC | 1 cut(s) | 424 |
| PdmI | GAANNNNTTC | 1 cut(s) | 754 |
| PfeI | GAWTC | 4 cut(s) | 89, 512, 664, 1432 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 323 |
| PfoI | TCCNGGA | 1 cut(s) | 1287 |
| PinAI | ACCGGT | 2 cut(s) | 890, 971 |
| PkrI | GCNGC | 1 cut(s) | 584 |
| PleI | GAGTC | 2 cut(s) | 60, 72 |
| PluTI | GGCGCC | 1 cut(s) | 429 |
| PmaCI | CACGTG | 1 cut(s) | 1306 |
| PmlI | CACGTG | 1 cut(s) | 1306 |
| PpsI | GAGTC | 2 cut(s) | 60, 72 |
| Ppu21I | YACGTR | 1 cut(s) | 1306 |
| PsiI | TTATAA | 1 cut(s) | 443 |
| Psp1406I | AACGTT | 1 cut(s) | 1365 |
| Psp6I | CCWGG | 2 cut(s) | 821, 1167 |
| PspCI | CACGTG | 1 cut(s) | 1306 |
| PspGI | CCWGG | 2 cut(s) | 821, 1167 |
| PspN4I | GGNNCC | 5 cut(s) | 247, 427, 763, 904, 1118 |
| PspPI | GGNCC | 4 cut(s) | 215, 314, 1117, 1257 |
| PsuI | RGATCY | 2 cut(s) | 556, 988 |
| RsaI | GTAC | 5 cut(s) | 210, 227, 454, 491, 1313 |
| RsaNI | GTAC | 5 cut(s) | 209, 226, 453, 490, 1312 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1319 |
| Rsr2I | CGGWCCG | 1 cut(s) | 215 |
| RsrII | CGGWCCG | 1 cut(s) | 215 |
| SacII | CCGCGG | 1 cut(s) | 583 |
| SaqAI | TTAA | 9 cut(s) | 141, 287, 392, 458, 494, 932, 1269, 1295, 1444 |
| SatI | GCNGC | 1 cut(s) | 583 |
| Sau3AI | GATC | 8 cut(s) | 112, 250, 349, 370, 556, 825, 988, 1135 |
| Sau96I | GGNCC | 4 cut(s) | 215, 314, 1117, 1257 |
| SchI | GAGTC | 2 cut(s) | 61, 73 |
| SfaNI | GCATC | 4 cut(s) | 268, 324, 473, 1021 |
| SfoI | GGCGCC | 1 cut(s) | 427 |
| Sfr303I | CCGCGG | 1 cut(s) | 583 |
| SfuI | TTCGAA | 1 cut(s) | 537 |
| SgrAI | CRCCGGYG | 1 cut(s) | 728 |
| SgrBI | CCGCGG | 1 cut(s) | 583 |
| SinI | GGWCC | 4 cut(s) | 215, 314, 1117, 1257 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1319 |
| SmlI | CTYRAG | 1 cut(s) | 18 |
| SmoI | CTYRAG | 1 cut(s) | 18 |
| Sse9I | AATT | 5 cut(s) | 263, 366, 772, 952, 1130 |
| SsiI | CCGC | 9 cut(s) | 218, 447, 580, 582, 585, 726, 765, 819, 983 |
| SspDI | GGCGCC | 1 cut(s) | 425 |
| SspI | AATATT | 1 cut(s) | 285 |
| SspMI | CTAG | 1 cut(s) | 1224 |
| TaiI | ACGT | 5 cut(s) | 1019, 1164, 1253, 1308, 1368 |
| TaqI | TCGA | 6 cut(s) | 483, 498, 537, 567, 1052, 1214 |
| TasI | AATT | 5 cut(s) | 263, 366, 772, 952, 1130 |
| TatI | WGTACW | 1 cut(s) | 1311 |
| TauI | GCSGC | 1 cut(s) | 585 |
| TfiI | GAWTC | 4 cut(s) | 89, 512, 664, 1432 |
| Tru1I | TTAA | 9 cut(s) | 141, 287, 392, 458, 494, 932, 1269, 1295, 1444 |
| Tru9I | TTAA | 9 cut(s) | 141, 287, 392, 458, 494, 932, 1269, 1295, 1444 |
| TscAI | CASTG | 3 cut(s) | 1153, 1195, 1434 |
| TspDTI | ATGAA | 1 cut(s) | 138 |
| TspGWI | ACGGA | 2 cut(s) | 290, 1212 |
| TspRI | CASTG | 3 cut(s) | 1153, 1195, 1434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 4 cut(s) | 215, 314, 1117, 1257 |
| XapI | RAATTY | 1 cut(s) | 952 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 262, 775 |
| XmnI | GAANNNNTTC | 1 cut(s) | 754 |
| XspI | CTAG | 1 cut(s) | 1224 |
| ZraI | GACGTC | 1 cut(s) | 1251 |