Polygalacturonase QRT3
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G20040 |
| fragaria_vesca | FvH4_3g12830 |
| malus_domestica | MD05G1247600.v1.1 |
| prunus_persica | Prupe.4G116400_v2.0.a1 |
| pyrus_communis | pycom05g22370 |
| rosa_chinensis | RchiOBHm_Chr5g0020771 |
| rosa_laevigata | RLG00000032561 |
| rosa_multiflora | Rmu_sc0002527.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00057530 |
| rosa_rugosa | Rorug05G0062800 |
| rosa_samantha | Rh5AG152700 Rh5BG152400 Rh5CG164000 Rh5DG151900 |
| rosa_wichuraiana | Rw5G013540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 155, 1890 |
| AccBSI | CCGCTC | 1 cut(s) | 1669 |
| AccI | GTMKAC | 1 cut(s) | 368 |
| AciI | CCGC | 5 cut(s) | 1248, 1351, 1662, 1669, 2291 |
| AclWI | GGATC | 3 cut(s) | 104, 107, 1904 |
| AcsI | RAATTY | 4 cut(s) | 679, 786, 1378, 1852 |
| AcuI | CTGAAG | 1 cut(s) | 1269 |
| AfaI | GTAC | 6 cut(s) | 189, 203, 1308, 1791, 1923, 2225 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1289, 1632, 2056 |
| AflIII | ACRYGT | 1 cut(s) | 1924 |
| AjiI | CACGTC | 1 cut(s) | 1726 |
| AjnI | CCWGG | 3 cut(s) | 1204, 1342, 1767 |
| Alw26I | GTCTC | 6 cut(s) | 294, 772, 898, 1341, 1473, 1601 |
| AlwI | GGATC | 3 cut(s) | 104, 107, 1904 |
| AoxI | GGCC | 4 cut(s) | 986, 1600, 1765, 1806 |
| ApeKI | GCWGC | 5 cut(s) | 40, 926, 1145, 1201, 1742 |
| ApoI | RAATTY | 4 cut(s) | 679, 786, 1378, 1852 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1472, 1504 |
| AseI | ATTAAT | 1 cut(s) | 467 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1173 |
| AspA2I | CCTAGG | 1 cut(s) | 1630 |
| AspLEI | GCGC | 1 cut(s) | 870 |
| AspS9I | GGNCC | 3 cut(s) | 1600, 1765, 2047 |
| AsuHPI | GGTGA | 4 cut(s) | 501, 1667, 2098, 2336 |
| AvaII | GGWCC | 1 cut(s) | 2047 |
| AvrII | CCTAGG | 1 cut(s) | 1630 |
| BbvI | GCAGC | 5 cut(s) | 52, 938, 1132, 1188, 1729 |
| BccI | CCATC | 3 cut(s) | 575, 1048, 1362 |
| BceAI | ACGGC | 2 cut(s) | 194, 2187 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1504, 1538 |
| BciT130I | CCWGG | 3 cut(s) | 1206, 1344, 1769 |
| BclI | TGATCA | 2 cut(s) | 2077, 2092 |
| BcoDI | GTCTC | 6 cut(s) | 294, 772, 898, 1341, 1473, 1601 |
| BfaI | CTAG | 3 cut(s) | 513, 1631, 1697 |
| BfmI | CTRYAG | 3 cut(s) | 123, 982, 1059 |
| BisI | GCNGC | 7 cut(s) | 41, 927, 1146, 1202, 1663, 1670, 1743 |
| BlnI | CCTAGG | 1 cut(s) | 1630 |
| BlpI | GCTNAGC | 1 cut(s) | 129 |
| BlsI | GCNGC | 7 cut(s) | 42, 928, 1147, 1203, 1664, 1671, 1744 |
| BmcAI | AGTACT | 1 cut(s) | 2225 |
| Bme1390I | CCNGG | 3 cut(s) | 1206, 1344, 1769 |
| Bme18I | GGWCC | 1 cut(s) | 2047 |
| BmgBI | CACGTC | 1 cut(s) | 1726 |
| BmgT120I | GGNCC | 3 cut(s) | 1600, 1765, 2047 |
| BmiI | GGNNCC | 2 cut(s) | 1318, 1766 |
| BmrFI | CCNGG | 3 cut(s) | 1206, 1344, 1769 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1470, 1502 |
| BpmI | CTGGAG | 2 cut(s) | 1146, 1365 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 129 |
| BpuEI | CTTGAG | 2 cut(s) | 758, 843 |
| BsaAI | YACGTR | 1 cut(s) | 454 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2076 |
| BsaI | GGTCTC | 3 cut(s) | 772, 1341, 1601 |
| BsaJI | CCNNGG | 2 cut(s) | 1504, 1630 |
| BsaWI | WCCGGW | 1 cut(s) | 1912 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1289, 1632, 2056 |
| Bse1I | ACTGG | 4 cut(s) | 1129, 1789, 2050, 2347 |
| Bse3DI | GCAATG | 3 cut(s) | 1303, 1711, 2161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2076 |
| BseBI | CCWGG | 3 cut(s) | 1206, 1344, 1769 |
| BseDI | CCNNGG | 2 cut(s) | 1504, 1630 |
| BseGI | GGATG | 6 cut(s) | 174, 407, 580, 1040, 1331, 2118 |
| BseJI | GATNNNNATC | 1 cut(s) | 2076 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1289, 1632, 2056 |
| BseMI | GCAATG | 3 cut(s) | 1303, 1711, 2161 |
| BseMII | CTCAG | 2 cut(s) | 1751, 1752 |
| BseNI | ACTGG | 4 cut(s) | 1129, 1789, 2050, 2347 |
| BseRI | GAGGAG | 5 cut(s) | 1145, 1239, 1326, 1521, 1524 |
| BseXI | GCAGC | 5 cut(s) | 52, 938, 1132, 1188, 1729 |
| BsgI | GTGCAG | 1 cut(s) | 59 |
| BshFI | GGCC | 4 cut(s) | 988, 1602, 1767, 1808 |
| BsiSI | CCGG | 1 cut(s) | 1913 |
| BslFI | GGGAC | 3 cut(s) | 1696, 2173, 2258 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1289, 1632, 2056 |
| BsmAI | GTCTC | 6 cut(s) | 294, 772, 898, 1341, 1473, 1601 |
| BsmBI | CGTCTC | 1 cut(s) | 1473 |
| BsmFI | GGGAC | 3 cut(s) | 1696, 2173, 2258 |
| BsnI | GGCC | 4 cut(s) | 988, 1602, 1767, 1808 |
| Bso31I | GGTCTC | 3 cut(s) | 772, 1341, 1601 |
| Bsp1407I | TGTACA | 2 cut(s) | 201, 1789 |
| Bsp143I | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 129 |
| BspACI | CCGC | 5 cut(s) | 1248, 1351, 1662, 1669, 2291 |
| BspANI | GGCC | 4 cut(s) | 988, 1602, 1767, 1808 |
| BspCNI | CTCAG | 2 cut(s) | 1751, 1752 |
| BspLI | GGNNCC | 2 cut(s) | 1318, 1766 |
| BspMAI | CTGCAG | 1 cut(s) | 1063 |
| BspPI | GGATC | 3 cut(s) | 104, 107, 1904 |
| BspTNI | GGTCTC | 3 cut(s) | 772, 1341, 1601 |
| BsrBI | CCGCTC | 1 cut(s) | 1669 |
| BsrDI | GCAATG | 3 cut(s) | 1303, 1711, 2161 |
| BsrGI | TGTACA | 2 cut(s) | 201, 1789 |
| BsrI | ACTGG | 4 cut(s) | 1129, 1789, 2050, 2347 |
| BssECI | CCNNGG | 2 cut(s) | 1504, 1630 |
| BssMI | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| BssNAI | GTATAC | 1 cut(s) | 369 |
| BssT1I | CCWWGG | 1 cut(s) | 1630 |
| Bst1107I | GTATAC | 1 cut(s) | 369 |
| Bst2UI | CCWGG | 3 cut(s) | 1206, 1344, 1769 |
| Bst4CI | ACNGT | 3 cut(s) | 1648, 2131, 2269 |
| Bst6I | CTCTTC | 2 cut(s) | 292, 1493 |
| BstAUI | TGTACA | 2 cut(s) | 201, 1789 |
| BstBAI | YACGTR | 1 cut(s) | 454 |
| BstC8I | GCNNGC | 3 cut(s) | 1268, 1667, 1702 |
| BstDEI | CTNAG | 5 cut(s) | 129, 215, 1738, 1760, 1945 |
| BstF5I | GGATG | 6 cut(s) | 174, 407, 580, 1040, 1331, 2118 |
| BstHHI | GCGC | 1 cut(s) | 870 |
| BstKTI | GATC | 6 cut(s) | 102, 112, 1240, 1912, 2080, 2095 |
| BstMAI | GTCTC | 6 cut(s) | 294, 772, 898, 1341, 1473, 1601 |
| BstMBI | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 968, 994, 1198 |
| BstNI | CCWGG | 3 cut(s) | 1206, 1344, 1769 |
| BstNSI | RCATGY | 3 cut(s) | 150, 325, 1928 |
| BstSCI | CCNGG | 3 cut(s) | 1204, 1342, 1767 |
| BstSFI | CTRYAG | 3 cut(s) | 123, 982, 1059 |
| BstV1I | GCAGC | 5 cut(s) | 52, 938, 1132, 1188, 1729 |
| BstX2I | RGATCY | 1 cut(s) | 1909 |
| BstYI | RGATCY | 1 cut(s) | 1909 |
| BstZ17I | GTATAC | 1 cut(s) | 369 |
| BsuRI | GGCC | 4 cut(s) | 988, 1602, 1767, 1808 |
| BtrI | CACGTC | 1 cut(s) | 1726 |
| BtsCI | GGATG | 6 cut(s) | 174, 407, 580, 1040, 1331, 2118 |
| BtsI | GCAGTG | 1 cut(s) | 1167 |
| BtsIMutI | CAGTG | 3 cut(s) | 1167, 1212, 1782 |
| Cac8I | GCNNGC | 3 cut(s) | 1268, 1667, 1702 |
| CfoI | GCGC | 1 cut(s) | 870 |
| Cfr13I | GGNCC | 3 cut(s) | 1600, 1765, 2047 |
| Csp6I | GTAC | 6 cut(s) | 188, 202, 1307, 1790, 1922, 2224 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1798, 1833 |
| CviQI | GTAC | 6 cut(s) | 188, 202, 1307, 1790, 1922, 2224 |
| DdeI | CTNAG | 5 cut(s) | 129, 215, 1738, 1760, 1945 |
| DpnI | GATC | 6 cut(s) | 101, 111, 1239, 1911, 2079, 2094 |
| DpnII | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| DraI | TTTAAA | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 2 cut(s) | 292, 1493 |
| EarI | CTCTTC | 2 cut(s) | 292, 1493 |
| EciI | GGCGGA | 1 cut(s) | 1263 |
| Eco130I | CCWWGG | 1 cut(s) | 1630 |
| Eco147I | AGGCCT | 1 cut(s) | 988 |
| Eco31I | GGTCTC | 3 cut(s) | 772, 1341, 1601 |
| Eco47I | GGWCC | 1 cut(s) | 2047 |
| Eco57I | CTGAAG | 1 cut(s) | 1269 |
| EcoRII | CCWGG | 3 cut(s) | 1204, 1342, 1767 |
| EcoT14I | CCWWGG | 1 cut(s) | 1630 |
| ErhI | CCWWGG | 1 cut(s) | 1630 |
| Esp3I | CGTCTC | 1 cut(s) | 1473 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 256, 288 |
| FaqI | GGGAC | 3 cut(s) | 1696, 2173, 2258 |
| FauNDI | CATATG | 1 cut(s) | 909 |
| FbaI | TGATCA | 2 cut(s) | 2077, 2092 |
| FblI | GTMKAC | 1 cut(s) | 368 |
| Fnu4HI | GCNGC | 7 cut(s) | 41, 927, 1146, 1202, 1663, 1670, 1743 |
| FokI | GGATG | 6 cut(s) | 181, 394, 567, 1027, 1318, 2125 |
| Fsp4HI | GCNGC | 7 cut(s) | 41, 927, 1146, 1202, 1663, 1670, 1743 |
| FspBI | CTAG | 3 cut(s) | 513, 1631, 1697 |
| GlaI | GCGC | 1 cut(s) | 869 |
| GluI | GCNGC | 7 cut(s) | 41, 927, 1146, 1202, 1663, 1670, 1743 |
| GsuI | CTGGAG | 2 cut(s) | 1146, 1365 |
| HaeIII | GGCC | 4 cut(s) | 988, 1602, 1767, 1808 |
| HapII | CCGG | 1 cut(s) | 1913 |
| HhaI | GCGC | 1 cut(s) | 870 |
| Hin6I | GCGC | 1 cut(s) | 868 |
| HinP1I | GCGC | 1 cut(s) | 868 |
| HindIII | AAGCTT | 2 cut(s) | 969, 1170 |
| HinfI | GANTC | 7 cut(s) | 163, 557, 1209, 1493, 1529, 1539, 1938 |
| HpaII | CCGG | 1 cut(s) | 1913 |
| HphI | GGTGA | 4 cut(s) | 501, 1667, 2098, 2336 |
| Hpy166II | GTNNAC | 6 cut(s) | 369, 1790, 2008, 2019, 2256, 2344 |
| Hpy188I | TCNGA | 8 cut(s) | 109, 168, 889, 1478, 1505, 1544, 1761, 2097 |
| Hpy188III | TCNNGA | 2 cut(s) | 264, 775 |
| Hpy8I | GTNNAC | 6 cut(s) | 369, 1790, 2008, 2019, 2256, 2344 |
| Hpy99I | CGWCG | 1 cut(s) | 1529 |
| HpyCH4III | ACNGT | 3 cut(s) | 1648, 2131, 2269 |
| HpyCH4IV | ACGT | 3 cut(s) | 453, 1482, 1725 |
| HpyCH4V | TGCA | 7 cut(s) | 40, 96, 1061, 1243, 1895, 1918, 1955 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 968, 994, 1198 |
| HpyF3I | CTNAG | 5 cut(s) | 129, 215, 1738, 1760, 1945 |
| HpySE526I | ACGT | 3 cut(s) | 453, 1482, 1725 |
| HspAI | GCGC | 1 cut(s) | 868 |
| Ksp22I | TGATCA | 2 cut(s) | 2077, 2092 |
| Kzo9I | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| LmnI | GCTCC | 1 cut(s) | 1032 |
| Lsp1109I | GCAGC | 5 cut(s) | 52, 938, 1132, 1188, 1729 |
| MaeI | CTAG | 3 cut(s) | 513, 1631, 1697 |
| MaeII | ACGT | 3 cut(s) | 453, 1482, 1725 |
| MaeIII | GTNAC | 9 cut(s) | 4, 637, 1072, 1371, 1655, 1780, 1796, 1927, 2269 |
| MalI | GATC | 6 cut(s) | 101, 111, 1239, 1911, 2079, 2094 |
| MbiI | CCGCTC | 1 cut(s) | 1669 |
| MboI | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| MboII | GAAGA | 8 cut(s) | 309, 618, 931, 977, 1480, 1552, 1919, 1933 |
| MflI | RGATCY | 1 cut(s) | 1909 |
| MmeI | TCCRAC | 1 cut(s) | 1054 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1173 |
| MseI | TTAA | 9 cut(s) | 192, 237, 245, 326, 467, 648, 683, 732, 1997 |
| MslI | CAYNNNNRTG | 1 cut(s) | 410 |
| MspA1I | CMGCKG | 3 cut(s) | 1145, 1662, 1742 |
| MspI | CCGG | 1 cut(s) | 1913 |
| MspR9I | CCNGG | 3 cut(s) | 1206, 1344, 1769 |
| MvaI | CCWGG | 3 cut(s) | 1206, 1344, 1769 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 968, 994, 1198 |
| NdeI | CATATG | 1 cut(s) | 909 |
| NdeII | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| NlaIV | GGNNCC | 2 cut(s) | 1318, 1766 |
| NmuCI | GTSAC | 7 cut(s) | 4, 1072, 1371, 1655, 1780, 1927, 2269 |
| NspI | RCATGY | 3 cut(s) | 150, 325, 1928 |
| PceI | AGGCCT | 1 cut(s) | 988 |
| PciI | ACATGT | 1 cut(s) | 1924 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1173 |
| PfeI | GAWTC | 7 cut(s) | 163, 557, 1209, 1493, 1529, 1539, 1938 |
| PfoI | TCCNGGA | 1 cut(s) | 1342 |
| PkrI | GCNGC | 7 cut(s) | 42, 928, 1147, 1203, 1664, 1671, 1744 |
| Ppu21I | YACGTR | 1 cut(s) | 454 |
| PscI | ACATGT | 1 cut(s) | 1924 |
| PshBI | ATTAAT | 1 cut(s) | 467 |
| PsiI | TTATAA | 2 cut(s) | 155, 1890 |
| Psp6I | CCWGG | 3 cut(s) | 1204, 1342, 1767 |
| PspGI | CCWGG | 3 cut(s) | 1204, 1342, 1767 |
| PspN4I | GGNNCC | 2 cut(s) | 1318, 1766 |
| PspPI | GGNCC | 3 cut(s) | 1600, 1765, 2047 |
| PstI | CTGCAG | 1 cut(s) | 1063 |
| PsuI | RGATCY | 1 cut(s) | 1909 |
| PvuII | CAGCTG | 2 cut(s) | 1145, 1742 |
| RsaI | GTAC | 6 cut(s) | 189, 203, 1308, 1791, 1923, 2225 |
| RsaNI | GTAC | 6 cut(s) | 188, 202, 1307, 1790, 1922, 2224 |
| RseI | CAYNNNNRTG | 1 cut(s) | 410 |
| SaqAI | TTAA | 9 cut(s) | 192, 237, 245, 326, 467, 648, 683, 732, 1997 |
| SatI | GCNGC | 7 cut(s) | 41, 927, 1146, 1202, 1663, 1670, 1743 |
| Sau3AI | GATC | 6 cut(s) | 99, 109, 1237, 1909, 2077, 2092 |
| Sau96I | GGNCC | 3 cut(s) | 1600, 1765, 2047 |
| ScaI | AGTACT | 1 cut(s) | 2225 |
| ScrFI | CCNGG | 3 cut(s) | 1206, 1344, 1769 |
| SfcI | CTRYAG | 3 cut(s) | 123, 982, 1059 |
| SinI | GGWCC | 1 cut(s) | 2047 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 410 |
| SmlI | CTYRAG | 2 cut(s) | 773, 858 |
| SmoI | CTYRAG | 2 cut(s) | 773, 858 |
| SseBI | AGGCCT | 1 cut(s) | 988 |
| SsiI | CCGC | 5 cut(s) | 1248, 1351, 1662, 1669, 2291 |
| SspI | AATATT | 2 cut(s) | 1989, 2002 |
| SspMI | CTAG | 3 cut(s) | 513, 1631, 1697 |
| StuI | AGGCCT | 1 cut(s) | 988 |
| StyD4I | CCNGG | 3 cut(s) | 1204, 1342, 1767 |
| StyI | CCWWGG | 1 cut(s) | 1630 |
| TaaI | ACNGT | 3 cut(s) | 1648, 2131, 2269 |
| TaiI | ACGT | 3 cut(s) | 456, 1485, 1728 |
| TaqI | TCGA | 4 cut(s) | 282, 1104, 1491, 1527 |
| TatI | WGTACW | 5 cut(s) | 187, 201, 1789, 1921, 2223 |
| TauI | GCSGC | 2 cut(s) | 1665, 1672 |
| TfiI | GAWTC | 7 cut(s) | 163, 557, 1209, 1493, 1529, 1539, 1938 |
| Tru1I | TTAA | 9 cut(s) | 192, 237, 245, 326, 467, 648, 683, 732, 1997 |
| Tru9I | TTAA | 9 cut(s) | 192, 237, 245, 326, 467, 648, 683, 732, 1997 |
| TscAI | CASTG | 3 cut(s) | 1167, 1219, 1789 |
| TseFI | GTSAC | 7 cut(s) | 4, 1072, 1371, 1655, 1780, 1927, 2269 |
| TseI | GCWGC | 5 cut(s) | 40, 926, 1145, 1201, 1742 |
| Tsp45I | GTSAC | 7 cut(s) | 4, 1072, 1371, 1655, 1780, 1927, 2269 |
| TspRI | CASTG | 3 cut(s) | 1167, 1219, 1789 |
| VpaK11BI | GGWCC | 1 cut(s) | 2047 |
| VspI | ATTAAT | 1 cut(s) | 467 |
| XapI | RAATTY | 4 cut(s) | 679, 786, 1378, 1852 |
| XceI | RCATGY | 3 cut(s) | 150, 325, 1928 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1723 |
| XmaJI | CCTAGG | 1 cut(s) | 1630 |
| XmiI | GTMKAC | 1 cut(s) | 368 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1173 |
| XspI | CTAG | 3 cut(s) | 513, 1631, 1697 |
| ZrmI | AGTACT | 1 cut(s) | 2225 |