Prupe.4G170900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
10082483 .. 10083493
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G170900.1

Sequence Viewer

Length: 234 bp
ATGATGGCTAGCCTCAAATTCTGGTTCTGTCTCTTGCTGGTCTTGCTTTCATTTTCAAGTTCTGATCAAGCCCGTCCTCTTGCACCATTGTTAGACAAGAGCAACAACAGAGAGGCCATGATGGAGAGTGCCAAACAAGTGTTGGAGGCTAGCATCGAAAGACAAGTTGGAAAGCTTTTCGAGACGTCCAAAAGAGTGAGTCCGGGAGGACCCGATCCCCGACATCATCATTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

9.03

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73165
prunus_persica Prupe.4G170900_v2.0.a1
pyrus_communis pycom03g18490
rosa_roxburghii Rroxscaffold_1G00048780
rosa_samantha Rh5BG219100 Rh5CG242600 Rh5DG224500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 2 cut(s) 35, 176
AlwI GGATC 1 cut(s) 209
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 204
AsuNHI GCTAGC 2 cut(s) 8, 149
AvaII GGWCC 1 cut(s) 209
BccI CCATC 1 cut(s) 115
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 35, 176
BfaI CTAG 2 cut(s) 9, 150
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 162
BmtI GCTAGC 2 cut(s) 12, 153
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 185
BshFI GGCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 35, 176
BsmBI CGTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 64, 214
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 2 cut(s) 12, 153
BspPI GGATC 1 cut(s) 209
BssMI GATC 2 cut(s) 64, 214
BssNI GRCGYC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 10, 151
BstKTI GATC 2 cut(s) 67, 217
BstMAI GTCTC 2 cut(s) 35, 176
BstMBI GATC 2 cut(s) 64, 214
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 202
BsuRI GGCC 1 cut(s) 116
Cac8I GCNNGC 2 cut(s) 10, 151
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 8, 12, 71, 116, 149, 175
CviKI_1 RGCY 6 cut(s) 8, 12, 71, 116, 149, 175
DpnI GATC 2 cut(s) 66, 216
DpnII GATC 2 cut(s) 64, 214
Eco47I GGWCC 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
FbaI TGATCA 1 cut(s) 64
FspBI CTAG 2 cut(s) 9, 150
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 203
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 64, 214
LpnPI CCDG 3 cut(s) 7, 23, 216
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 9, 150
MaeII ACGT 1 cut(s) 185
MalI GATC 2 cut(s) 66, 216
MboI GATC 2 cut(s) 64, 214
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 123, 148
MnlI CCTC 5 cut(s) 23, 87, 106, 139, 200
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 64, 214
NheI GCTAGC 2 cut(s) 8, 149
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 211
PfoI TCCNGGA 1 cut(s) 202
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 209
PspPPI RGGWCCY 1 cut(s) 209
Sau3AI GATC 2 cut(s) 64, 214
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 204
SetI ASST 2 cut(s) 177, 188
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 1 cut(s) 209
Sse9I AATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 9, 150
StyD4I CCNGG 1 cut(s) 202
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 156, 180
TasI AATT 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 209
XapI RAATTY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 2 cut(s) 9, 150
ZraI GACGTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.