Rh5BG219100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019569
Physical Location & Seq
Reverse (-)
25244221 .. 25246114
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG219100.1

Sequence Viewer

Length: 528 bp
ATGGTCGTGCTGGAAGCTGGTCATTGGCTGCTTCCGATGTCGTCCAGTGGGGGAGACAATCTGGTGGTGGATGATTTTGTTTGTGGAGCTGACGGGGTCGTCGGGGCTGTGCTTGCAGAGTTCCGGTGCTGGGCATGGGCTGCACTTGGTAGAGGCACCGGTATCGGTGCTGGCTTTGGTGGCTGGAACTCTGAGATGAGGGAGATCGGCAATGGCATCCGAGCTGATTGGGCTACCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCCTTGCTTTGGGCTCCCCGAGGTTGGGCCTCACAGAGGTGGAGGTGAATATGGGCTGGCATTTAACAGTCTGACAGGTTCTCATCAAGCTCCTGCTCCTGCTCCTGCTCCATTGCTGAAGGAGAGCAAGGTCGTCGACCGATCAATAATGATGGAGAGTGCCAGAAAAGTGTTGAAGGCTAGAATTCAAAGCCAAGCCGGAAAGCCTTTTGACTCCAAACGCTTGAGTCCCAGCGGCCCTGATCCAAACCATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.43

Weight (kDa)

6.18

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73165
prunus_persica Prupe.4G170900_v2.0.a1
pyrus_communis pycom03g18490
rosa_roxburghii Rroxscaffold_1G00048780
rosa_samantha Rh5BG219100 Rh5CG242600 Rh5DG224500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 405
AciI CCGC 1 cut(s) 504
AclWI GGATC 1 cut(s) 506
AcsI RAATTY 1 cut(s) 453
AcuI CTGAAG 1 cut(s) 407
AfiI CCNNNNNNNGG 6 cut(s) 130, 249, 278, 293, 294, 305
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 445, 458
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 4 cut(s) 17, 89, 224, 359
AluI AGCT 4 cut(s) 17, 89, 224, 359
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 296, 505
ApeKI GCWGC 2 cut(s) 28, 140
ApoI RAATTY 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 296, 506
AsuHPI GGTGA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 2 cut(s) 271, 285
BbvI GCAGC 2 cut(s) 15, 127
BccI CCATC 1 cut(s) 415
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 385, 419
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 450, 526
BisI GCNGC 3 cut(s) 29, 141, 505
BlsI GCNGC 3 cut(s) 30, 142, 506
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 2 cut(s) 296, 506
BmiI GGNNCC 3 cut(s) 157, 270, 284
BmsI GCATC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 514
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 2 cut(s) 123, 158
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 249, 278, 293, 294, 305
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 217, 380
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 76, 216
BseLI CCNNNNNNNGG 6 cut(s) 130, 249, 278, 293, 294, 305
BseMI GCAATG 2 cut(s) 217, 380
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 15, 127
BseYI CCCAGC 3 cut(s) 129, 249, 500
BsgI GTGCAG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 298, 507
BshNI GGYRCC 1 cut(s) 155
BshTI ACCGGT 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 3 cut(s) 124, 159, 468
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 6 cut(s) 130, 249, 278, 293, 294, 305
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 483
BsnI GGCC 2 cut(s) 298, 507
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 2 cut(s) 271, 285
Bsp143I GATC 3 cut(s) 204, 410, 511
BspACI CCGC 1 cut(s) 504
BspANI GGCC 2 cut(s) 298, 507
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 157, 270, 284
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 217, 380
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 3 cut(s) 204, 410, 511
Bst4CI ACNGT 2 cut(s) 260, 338
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 114, 172, 327
BstDEI CTNAG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 76, 216
BstKTI GATC 3 cut(s) 207, 413, 514
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 204, 410, 511
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 4 cut(s) 113, 140, 180, 230
BstV1I GCAGC 2 cut(s) 15, 127
BsuRI GGCC 2 cut(s) 298, 507
BtsCI GGATG 2 cut(s) 76, 216
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 114, 172, 327
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 296, 506
CspAI ACCGGT 1 cut(s) 158
CviAII CATG 1 cut(s) 135
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 206, 412, 513
DpnII GATC 3 cut(s) 204, 410, 511
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 271, 285
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 271, 285
FaeI CATG 1 cut(s) 138
FaiI YATR 2 cut(s) 136, 321
FaqI GGGAC 1 cut(s) 483
FatI CATG 1 cut(s) 134
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 29, 141, 505
FokI GGATG 2 cut(s) 83, 203
FriOI GRGCYC 2 cut(s) 271, 285
Fsp4HI GCNGC 3 cut(s) 29, 141, 505
FspBI CTAG 2 cut(s) 450, 526
GluI GCNGC 3 cut(s) 29, 141, 505
GsaI CCCAGC 3 cut(s) 133, 253, 504
HaeIII GGCC 2 cut(s) 298, 507
HapII CCGG 3 cut(s) 124, 159, 468
Hin1II CATG 1 cut(s) 138
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 2 cut(s) 482, 496
HpaII CCGG 3 cut(s) 124, 159, 468
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 36, 193, 221, 342
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 2 cut(s) 104, 407
HpyAV CCTTC 2 cut(s) 382, 439
HpyCH4III ACNGT 2 cut(s) 260, 338
HpyCH4V TGCA 2 cut(s) 116, 143
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 140, 180, 230
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 138
Kzo9I GATC 3 cut(s) 204, 410, 511
LmnI GCTCC 7 cut(s) 86, 274, 288, 364, 370, 376, 382
Lsp1109I GCAGC 2 cut(s) 15, 127
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 450, 526
MalI GATC 3 cut(s) 206, 412, 513
MboI GATC 3 cut(s) 204, 410, 511
MhlI GDGCHC 2 cut(s) 271, 285
MluCI AATT 1 cut(s) 453
MlyI GAGTC 2 cut(s) 476, 505
MnlI CCTC 7 cut(s) 146, 192, 253, 283, 299, 305, 309
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 3 cut(s) 124, 159, 468
MwoI GCNNNNNNNGC 4 cut(s) 113, 140, 180, 230
NdeII GATC 3 cut(s) 204, 410, 511
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 3 cut(s) 157, 270, 284
OliI CACNNNNGTG 1 cut(s) 306
PflFI GACNNNGTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 3 cut(s) 30, 142, 506
PleI GAGTC 2 cut(s) 476, 504
PpsI GAGTC 2 cut(s) 476, 504
PspFI CCCAGC 3 cut(s) 129, 249, 500
PspN4I GGNNCC 3 cut(s) 157, 270, 284
PspPI GGNCC 2 cut(s) 296, 506
PsyI GACNNNGTC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 306
SalI GTCGAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 29, 141, 505
Sau3AI GATC 3 cut(s) 204, 410, 511
Sau96I GGNCC 2 cut(s) 296, 506
SchI GAGTC 2 cut(s) 476, 505
SduI GDGCHC 2 cut(s) 271, 285
SfaNI GCATC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 1 cut(s) 453
SsiI CCGC 1 cut(s) 504
SspMI CTAG 2 cut(s) 450, 526
TaaI ACNGT 2 cut(s) 260, 338
TaqI TCGA 1 cut(s) 405
TaqII GACCGA 1 cut(s) 423
TasI AATT 1 cut(s) 453
TauI GCSGC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 28, 140
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 303
XapI RAATTY 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 405
XspI CTAG 2 cut(s) 450, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.