Rh5DG224500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
25158707 .. 25158943
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG224500.1

Sequence Viewer

Length: 237 bp
ATGGCTAGCCAGCTCAAGTACATCTGGTTCTTTATTTTCTTAGTCTTGCTTTCATTTCCAGGTTCTCATCAAGCTCCTGCTCCTGCTCCATTGCTGAAGGAGAGCAAGGTCGTCGACCGATCAATAATGATGGAGAGTGCCAGAAAAGTGTTGAAGGCTAGAATTCAAAGCCAAGCCGGAAAGCCTTTTGACTCCAAACGCTTGAGTCCCAGCGGCCCTGATCCAAACCATCACTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.73

Weight (kDa)

10.21

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019569)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73165
prunus_persica Prupe.4G170900_v2.0.a1
pyrus_communis pycom03g18490
rosa_roxburghii Rroxscaffold_1G00048780
rosa_samantha Rh5BG219100 Rh5CG242600 Rh5DG224500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 1 cut(s) 20
AgsI TTSAA 2 cut(s) 154, 167
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 2 cut(s) 13, 74
AluI AGCT 2 cut(s) 13, 74
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 5
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 60
BfaI CTAG 3 cut(s) 6, 159, 235
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 60
BmtI GCTAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 216
BsiEI CGRYCG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 119, 220
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 89
BssMI GATC 2 cut(s) 119, 220
Bst2UI CCWGG 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 7, 11
BstDEI CTNAG 1 cut(s) 40
BstKTI GATC 2 cut(s) 122, 223
BstMBI GATC 2 cut(s) 119, 220
BstMCI CGRYCG 1 cut(s) 118
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 7, 11
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 9 cut(s) 5, 9, 13, 74, 158, 171, 176, 184, 216
CviKI_1 RGCY 9 cut(s) 5, 9, 13, 74, 158, 171, 176, 184, 216
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 40
DpnI GATC 2 cut(s) 121, 222
DpnII GATC 2 cut(s) 119, 220
Eco57I CTGAAG 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 58
FaqI GGGAC 1 cut(s) 192
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 214
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 3 cut(s) 6, 159, 235
GluI GCNGC 1 cut(s) 214
GsaI CCCAGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 177
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 191, 205
HpaII CCGG 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 91, 148
HpyF3I CTNAG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 119, 220
LmnI GCTCC 3 cut(s) 79, 85, 91
MaeI CTAG 3 cut(s) 6, 159, 235
MalI GATC 2 cut(s) 121, 222
MboI GATC 2 cut(s) 119, 220
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 185, 214
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
NdeII GATC 2 cut(s) 119, 220
NheI GCTAGC 1 cut(s) 5
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 2 cut(s) 185, 213
PpsI GAGTC 2 cut(s) 185, 213
Psp6I CCWGG 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 58
PspPI GGNCC 1 cut(s) 215
PsrI GAACNNNNNNTAC 2 cut(s) 11, 43
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SalI GTCGAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 2 cut(s) 119, 220
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 2 cut(s) 185, 214
ScrFI CCNGG 1 cut(s) 60
SetI ASST 4 cut(s) 15, 64, 76, 111
SmlI CTYRAG 2 cut(s) 14, 202
SmoI CTYRAG 2 cut(s) 14, 202
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 213
SspMI CTAG 3 cut(s) 6, 159, 235
StyD4I CCNGG 1 cut(s) 58
TaqI TCGA 1 cut(s) 114
TaqII GACCGA 1 cut(s) 132
TasI AATT 1 cut(s) 162
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 42
XapI RAATTY 1 cut(s) 162
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 3 cut(s) 6, 159, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.