Prupe.4G193900_v2.0.a1

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
11694822 .. 11695597
776 bp
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UTR
Exon/CDS
Intron
Prupe.4G193900.1_v2.0.a1.CDS.3

Sequence Viewer

Length: 351 bp
ATGCGAACCGCAAATTTTCACCCAAGCATTTGGGGAGATCGGTTCATCAACTACGATTATTCTGAACACAAGATAACTCATGCCCAGAAGCAGGTTGACGAACTGAAAGAAATAGTGAGGAGAGAAGTGTTCACAAATCTTAAAGCTGGAGGTGATGGTTTTGCACATCAGCTCAAGTTAATTGAAGCAATCCAGCGTCTTGGCGTGGCATACCATTTTGAAAGAGAGATCGAAGAAGCACTGGAACGCATACATGGTACAACCTGTCATGACCATTATGATGGTGATCTGCACAGTGTTGCTCTTGGCTTTCGGCTACTAAGGCAGCATGGATATAATGTTTCATGTGGT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.57

Weight (kDa)

6.34

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020417)

Species Orthologous Gene IDs
prunus_persica Prupe.4G193900_v2.0.a1
rosa_multiflora Rmu_co8170300.1_g000001
rosa_roxburghii Rroxscaffold_2G00127880 Rroxscaffold_2G00128760
rosa_samantha Rh3DG216400 Rh3DG328500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AciI CCGC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 185, 221
AluBI AGCT 2 cut(s) 146, 172
AluI AGCT 2 cut(s) 146, 172
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 3 cut(s) 11, 164, 296
BbvI GCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 149, 275
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 285
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 91
Bsp143I GATC 3 cut(s) 37, 228, 286
BspACI CCGC 1 cut(s) 9
BspHI TCATGA 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 246
BssMI GATC 3 cut(s) 37, 228, 286
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 320
BstKTI GATC 3 cut(s) 40, 231, 289
BstMBI GATC 3 cut(s) 37, 228, 286
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 337
BstXI CCANNNNNNTGG 3 cut(s) 30, 200, 281
BtsIMutI CAGTG 2 cut(s) 239, 301
BveI ACCTGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 268
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 258
CviAII CATG 5 cut(s) 80, 254, 269, 329, 345
CviJI RGCY 4 cut(s) 146, 172, 309, 316
CviKI_1 RGCY 4 cut(s) 146, 172, 309, 316
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 320
DpnI GATC 3 cut(s) 39, 230, 288
DpnII GATC 3 cut(s) 37, 228, 286
FaeI CATG 5 cut(s) 83, 257, 272, 332, 348
FaiI YATR 9 cut(s) 81, 211, 251, 255, 270, 279, 330, 336, 346
FatI CATG 5 cut(s) 79, 253, 268, 328, 344
Fnu4HI GCNGC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 1 cut(s) 185
Hin1II CATG 5 cut(s) 83, 257, 272, 332, 348
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HphI GGTGA 3 cut(s) 11, 164, 296
Hpy166II GTNNAC 2 cut(s) 97, 132
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 2 cut(s) 97, 132
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 164, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 5 cut(s) 83, 257, 272, 332, 348
Kzo9I GATC 3 cut(s) 37, 228, 286
LpnPI CCDG 6 cut(s) 77, 98, 132, 206, 227, 277
Lsp1109I GCAGC 1 cut(s) 337
MalI GATC 3 cut(s) 39, 230, 288
MboI GATC 3 cut(s) 37, 228, 286
MboII GAAGA 1 cut(s) 245
MluCI AATT 2 cut(s) 13, 180
MnlI CCTC 2 cut(s) 111, 143
MseI TTAA 2 cut(s) 141, 179
MslI CAYNNNNRTG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeII GATC 3 cut(s) 37, 228, 286
NlaIII CATG 5 cut(s) 83, 257, 272, 332, 348
PagI TCATGA 1 cut(s) 268
PkrI GCNGC 1 cut(s) 327
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 141, 179
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 3 cut(s) 37, 228, 286
SetI ASST 5 cut(s) 96, 148, 154, 174, 266
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 13, 180
SsiI CCGC 1 cut(s) 9
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 13, 180
Tru1I TTAA 2 cut(s) 141, 179
Tru9I TTAA 2 cut(s) 141, 179
TscAI CASTG 2 cut(s) 246, 301
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 34, 333
TspRI CASTG 2 cut(s) 246, 301
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.