Rmu_co8170300.1_g000001

(-)-alpha-pinene synthase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8170300.1
Physical Location & Seq
Forward (+)
150 .. 651
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8170300.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atgtcaatgtctttccaagcagctgttctttcatcaaatgctaagcctgaaattattcgcaggacggcaaattatcaccctagtatttggggagatcggttcatcaactgcgattccaaagacaatataagtcatgcccgtaggcaacagcaagttgaggagctgaaagcagtagtgaagagagaagtattcaaaaatctggcaactgagttttcacatcaactgaagttaatcgatgcaatccagtgccttggcagcaaggatacagtgtttcatgtggtatgcatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

8.93

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020417)

Species Orthologous Gene IDs
prunus_persica Prupe.4G193900_v2.0.a1
rosa_multiflora Rmu_co8170300.1_g000001
rosa_roxburghii Rroxscaffold_2G00127880 Rroxscaffold_2G00128760
rosa_samantha Rh3DG216400 Rh3DG328500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 245
AgsI TTSAA 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 2 cut(s) 23, 163
AluI AGCT 2 cut(s) 23, 163
ApeKI GCWGC 2 cut(s) 20, 255
Asp700I GAANNNNTTC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 68
BbvI GCAGC 2 cut(s) 32, 267
BceAI ACGGC 1 cut(s) 81
BciVI GTATCC 1 cut(s) 256
BfaI CTAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 256
BisI GCNGC 2 cut(s) 21, 256
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 2 cut(s) 22, 257
BmsI GCATC 1 cut(s) 226
Bpu1102I GCTNAGC 1 cut(s) 42
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 244
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 250
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 32, 267
BshVI ATCGAT 1 cut(s) 234
Bsp143I GATC 1 cut(s) 94
Bsp1720I GCTNAGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 234
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 1 cut(s) 94
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 42, 207
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 32, 267
BstXI CCANNNNNNTGG 1 cut(s) 251
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 251, 273
ClaI ATCGAT 1 cut(s) 234
CviAII CATG 3 cut(s) 134, 275, 286
CviJI RGCY 3 cut(s) 23, 46, 163
CviKI_1 RGCY 3 cut(s) 23, 46, 163
DdeI CTNAG 2 cut(s) 42, 207
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 137, 278, 289
FaiI YATR 5 cut(s) 128, 135, 276, 283, 287
FatI CATG 3 cut(s) 133, 274, 285
Fnu4HI GCNGC 2 cut(s) 21, 256
Fsp4HI GCNGC 2 cut(s) 21, 256
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 21, 256
Hin1II CATG 3 cut(s) 137, 278, 289
HinfI GANTC 1 cut(s) 113
HphI GGTGA 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 239, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 2 cut(s) 42, 207
Hsp92II CATG 3 cut(s) 137, 278, 289
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 46, 60, 185, 257
Lsp1109I GCAGC 2 cut(s) 32, 267
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 81
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 1 cut(s) 190
MluCI AATT 2 cut(s) 51, 70
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 255
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 137, 278, 289
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 22, 257
PvuII CAGCTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 21, 256
Sau3AI GATC 1 cut(s) 94
SetI ASST 2 cut(s) 25, 165
SfaNI GCATC 1 cut(s) 226
Sse9I AATT 2 cut(s) 51, 70
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 234
TasI AATT 2 cut(s) 51, 70
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 2 cut(s) 251, 273
TseI GCWGC 2 cut(s) 20, 255
TspDTI ATGAA 3 cut(s) 21, 91, 263
TspRI CASTG 2 cut(s) 251, 273
XceI RCATGY 1 cut(s) 289
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.