Prupe.5G099100_v2.0.a1

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014302
Physical Location & Seq
Forward (+)
10728344 .. 10729826
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G099100.1

Sequence Viewer

Length: 1461 bp
ATGGCCTCCAATTACAACAAACCCAAGAAACCCTTTTCCTCTTCTTCATCAAAACTATGCACCATTCTTTTCTTCGTTGTCCTCTTCACCATCCCAGCTCTTTTTCTCTTCCATACATACACCACCTCCACTTCCATTTGCACCACTTTCCCCACCCATCCCAAGCTGTGGTCCGGCGATCTTCGTACCGCTCTGTTTTCATGGAACCGCCTTCCCTTTCTTCACCATCAAGACCACCCTCGCCTCAAAATCGCTGTGTTCTCCAAAAAATGGCCTCTTGGCACTGTCCCCGGAGGCATGGAACGCCATGCCATCACTCTACACAAAACCCTTGCCCTCCTCGGCCACCAAGTCCATGTCTTCACCTCCCCACAAGAGCTGATCAAACATCATCCTCCAAGTCCTTCGTCACCGTTCATCCATTTCCACGAGGGTGAGCCGGGGATTTGGCGTTACAACATGGCATGGGAACAATTTTTGGAGCAAAACCAACGTGAAAAATTCGACGTGGTTCACTCTGAAAGTGTGGCGCTTCCTCATTGGCTGGCCCGGGGCCTCCCAAACCTTGCAGTGTCATGGCATGGCATAGCCCTAGAGAGCTTGCACTCATACATCTTCCAAGACTTGGCACGTAACCCTAGCACGGAGCCTATGTCCCCATCTTTCAACAAAAGCATACAAGGGTCGGTTCCAAAGGTGTTGAATGAGATTAGGTTTTTCCAAAACTATGCACATCATGTTGCTACAAGTGATAGTTGTGGAGAGATGCTGAGGGATGTGTACCAAATACCAAACAAAAGAGTCCATGTGATAGTCAACGGTGTAAATGAAGCTGAGTTTGGTCAAAATAGTAAAGTAGGCCACGAGTTTAGATCTAGAATTGGCATACCACAAAATTCTAGTAATTTAGTATTTGGAGTGGTTGGAAGATTAGTGAAGGACAAAGGCCATCCTATACTTTATGAAGCATTCTCTAAGCTCATAGCTAAGTACCCTTCAAATGTGTACTTGATTGTGGCCGGTTCGGGGCCATGGGAGCAAAGGTACAAAGATTTGAAGTCTGATCGAATTCTAGTACTTGGTTCTATGAGTCTAAGTAAGTTACATGCGTTTTATAACGCGATCGATATTTTTGTGAACCCTACACTTAGACCACAAGGTATCGATCTAACTCTCACGGAGGCGATGATGAGCGGGAAGCCAATTATGGCATCAAGGTTTCCAAGCATCAAAGGTACTATAGTTGTGGAAGATGAATATGGTTTTATGTTTTCTCCCAACGTGGAGTCGTTGTTGGAAGCTTTGGAATTGGCTGTGAATGAAGGGCCAAAGAGGGCAGCACAAAGAGGAAAGGCATGCTTGGAATATGCAAATTCCATGTTTACAGCAACCAAGATGGCATTAGCATACGAGAGGTTGTTTCTTTGTATAAAAAATGAAACATTTTGTACCTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0016020 GO:0016740 GO:0016757
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

487

Amino Acids

54.91

Weight (kDa)

9.16

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014302)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19460
fragaria_vesca FvH4_5g24400
malus_domestica MD06G1022000.v1.1 MD16G1288000.v1.1
prunus_persica Prupe.5G016500_v2.0.a1 Prupe.5G099100_v2.0.a1
pyrus_communis pycom06g01590
rosa_chinensis RchiOBHm_Chr7g0214801
rosa_laevigata RLG00000002721
rosa_multiflora Rmu_sc0002308.1_g000036
rosa_roxburghii Rroxscaffold_3G00245060
rosa_rugosa Rorug07G0147100
rosa_samantha Rh7AG284100 Rh7BG275000 Rh7CG303500 Rh7DG287400
rosa_wichuraiana Rw7G024220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1116
AccB7I CCANNNNNTGG 3 cut(s) 168, 270, 625
AccBSI CCGCTC 2 cut(s) 191, 1194
AccII CGCG 1 cut(s) 1121
AciI CCGC 3 cut(s) 189, 208, 1194
AcoI YGGCCR 2 cut(s) 343, 1017
AcsI RAATTY 4 cut(s) 500, 895, 1068, 1372
AfaI GTAC 8 cut(s) 187, 782, 992, 1007, 1046, 1077, 1237, 1450
AfiI CCNNNNNNNGG 5 cut(s) 168, 270, 625, 643, 1026
AgsI TTSAA 4 cut(s) 667, 703, 999, 1057
AjiI CACGTC 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AleI CACNNNNGTG 1 cut(s) 432
AluBI AGCT 8 cut(s) 98, 166, 379, 600, 833, 979, 986, 1301
AluI AGCT 8 cut(s) 98, 166, 379, 600, 833, 979, 986, 1301
Ama87I CYCGRG 1 cut(s) 549
ApeKI GCWGC 1 cut(s) 1337
ApoI RAATTY 4 cut(s) 500, 895, 1068, 1372
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 5 cut(s) 171, 547, 553, 1028, 1325
AsuC2I CCSGG 4 cut(s) 291, 441, 550, 551
AsuHPI GGTGA 5 cut(s) 79, 215, 355, 402, 446
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 171
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BauI CACGAG 2 cut(s) 428, 863
BbsI GAAGAC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 770
BbvI GCAGC 1 cut(s) 1349
BccI CCATC 7 cut(s) 98, 165, 234, 320, 667, 957, 1390
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 4 cut(s) 291, 441, 550, 551
BfaI CTAG 5 cut(s) 593, 639, 876, 900, 1073
BfmI CTRYAG 1 cut(s) 1239
BfoI RGCGCY 1 cut(s) 533
BglII AGATCT 1 cut(s) 872
BisI GCNGC 1 cut(s) 1338
BlsI GCNGC 1 cut(s) 1339
BmcAI AGTACT 1 cut(s) 1077
Bme1390I CCNGG 4 cut(s) 291, 441, 550, 551
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 5 cut(s) 171, 547, 553, 1028, 1325
BmiI GGNNCC 5 cut(s) 206, 554, 648, 690, 1029
BmrFI CCNGG 4 cut(s) 291, 441, 550, 551
BmsI GCATC 3 cut(s) 756, 1220, 1236
BpiI GAAGAC 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 770
BpuMI CCSGG 4 cut(s) 291, 441, 550, 551
Bsa29I ATCGAT 2 cut(s) 1125, 1164
BsaAI YACGTR 1 cut(s) 632
BsaJI CCNNGG 6 cut(s) 289, 340, 440, 549, 550, 1031
BsaXI ACNNNNNCTCC 8 cut(s) 110, 140, 638, 668, 1028, 1058, 1277, 1307
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 270, 625, 643, 1026
Bse118I RCCGGY 1 cut(s) 1019
BseCI ATCGAT 2 cut(s) 1125, 1164
BseDI CCNNGG 6 cut(s) 289, 340, 440, 549, 550, 1031
BseGI GGATG 6 cut(s) 90, 157, 391, 417, 781, 949
BseLI CCNNNNNNNGG 5 cut(s) 168, 270, 625, 643, 1026
BseMII CTCAG 2 cut(s) 761, 825
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 1349
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 1121
Bsh1285I CGRYCG 1 cut(s) 1125
BshVI ATCGAT 2 cut(s) 1125, 1164
BsiEI CGRYCG 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 5 cut(s) 174, 291, 440, 550, 1020
BslFI GGGAC 2 cut(s) 272, 640
BslI CCNNNNNNNGG 5 cut(s) 168, 270, 625, 643, 1026
BsmFI GGGAC 2 cut(s) 272, 640
BsmI GAATGC 1 cut(s) 968
BsoBI CYCGRG 1 cut(s) 549
Bsp143I GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
Bsp19I CCATGG 1 cut(s) 1031
BspACI CCGC 3 cut(s) 189, 208, 1194
BspCNI CTCAG 2 cut(s) 762, 826
BspDI ATCGAT 2 cut(s) 1125, 1164
BspFNI CGCG 1 cut(s) 1121
BspLI GGNNCC 5 cut(s) 206, 554, 648, 690, 1029
BsrBI CCGCTC 2 cut(s) 191, 1194
BsrFI RCCGGY 1 cut(s) 1019
BssAI RCCGGY 1 cut(s) 1019
BssECI CCNNGG 6 cut(s) 289, 340, 440, 549, 550, 1031
BssMI GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
BssSI CACGAG 2 cut(s) 428, 863
BssT1I CCWWGG 1 cut(s) 1031
Bst2BI CACGAG 2 cut(s) 428, 863
Bst4CI ACNGT 3 cut(s) 286, 414, 821
Bst6I CTCTTC 3 cut(s) 46, 89, 113
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 546, 602, 1357
BstDEI CTNAG 6 cut(s) 770, 834, 975, 987, 1094, 1148
BstDSI CCRYGG 1 cut(s) 1031
BstF5I GGATG 6 cut(s) 90, 157, 391, 417, 781, 949
BstFNI CGCG 1 cut(s) 1121
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 6 cut(s) 181, 384, 875, 1066, 1125, 1168
BstMBI GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
BstMCI CGRYCG 1 cut(s) 1125
BstMWI GCNNNNNNNGC 2 cut(s) 303, 1036
BstNSI RCATGY 2 cut(s) 1109, 1359
BstSCI CCNGG 4 cut(s) 289, 439, 548, 549
BstSFI CTRYAG 1 cut(s) 1239
BstUI CGCG 1 cut(s) 1121
BstV1I GCAGC 1 cut(s) 1349
BstV2I GAAGAC 1 cut(s) 352
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
Bsu15I ATCGAT 2 cut(s) 1125, 1164
BsuTUI ATCGAT 2 cut(s) 1125, 1164
BtgI CCRYGG 1 cut(s) 1031
BtgZI GCGATG 1 cut(s) 1199
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 6 cut(s) 90, 157, 391, 417, 781, 949
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 282, 576
Cac8I GCNNGC 3 cut(s) 546, 602, 1357
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 1019
Cfr13I GGNCC 5 cut(s) 171, 547, 553, 1028, 1325
Cfr9I CCCGGG 1 cut(s) 549
ClaI ATCGAT 2 cut(s) 1125, 1164
Csp6I GTAC 8 cut(s) 186, 781, 991, 1006, 1045, 1076, 1236, 1449
CviQI GTAC 8 cut(s) 186, 781, 991, 1006, 1045, 1076, 1236, 1449
DdeI CTNAG 6 cut(s) 770, 834, 975, 987, 1094, 1148
DpnI GATC 6 cut(s) 180, 383, 874, 1065, 1124, 1167
DpnII GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
EaeI YGGCCR 2 cut(s) 343, 1017
Eam1104I CTCTTC 3 cut(s) 46, 89, 113
EarI CTCTTC 3 cut(s) 46, 89, 113
Eco130I CCWWGG 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 1068
EcoT14I CCWWGG 1 cut(s) 1031
ErhI CCWWGG 1 cut(s) 1031
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 1343, 1375
FaqI GGGAC 2 cut(s) 272, 640
FauI CCCGC 1 cut(s) 1187
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 1 cut(s) 1338
FokI GGATG 6 cut(s) 77, 144, 378, 404, 788, 936
Fsp4HI GCNGC 1 cut(s) 1338
FspBI CTAG 5 cut(s) 593, 639, 876, 900, 1073
GlaI GCGC 1 cut(s) 531
GluI GCNGC 1 cut(s) 1338
GsaI CCCAGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 533
HapII CCGG 5 cut(s) 174, 291, 440, 550, 1020
HhaI GCGC 1 cut(s) 532
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 1299
HinfI GANTC 3 cut(s) 801, 1090, 1286
HpaII CCGG 5 cut(s) 174, 291, 440, 550, 1020
HphI GGTGA 5 cut(s) 79, 215, 355, 402, 446
Hpy166II GTNNAC 6 cut(s) 514, 781, 817, 1006, 1138, 1383
Hpy188I TCNGA 2 cut(s) 520, 1063
Hpy188III TCNNGA 2 cut(s) 230, 876
Hpy8I GTNNAC 6 cut(s) 514, 781, 817, 1006, 1138, 1383
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 5 cut(s) 221, 414, 931, 1005, 1316
HpyCH4III ACNGT 3 cut(s) 286, 414, 821
HpyCH4IV ACGT 4 cut(s) 493, 507, 631, 1281
HpyCH4V TGCA 6 cut(s) 60, 141, 569, 604, 731, 1370
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 1036
HpyF3I CTNAG 6 cut(s) 770, 834, 975, 987, 1094, 1148
HpySE526I ACGT 4 cut(s) 493, 507, 631, 1281
HspAI GCGC 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
LmnI GCTCC 3 cut(s) 481, 646, 1036
LpnPI CCDG 7 cut(s) 108, 187, 304, 453, 530, 563, 1033
Lsp1109I GCAGC 1 cut(s) 1349
LweI GCATC 3 cut(s) 756, 1220, 1236
MaeI CTAG 5 cut(s) 593, 639, 876, 900, 1073
MaeII ACGT 4 cut(s) 493, 507, 631, 1281
MaeIII GTNAC 4 cut(s) 408, 452, 632, 1101
MalI GATC 6 cut(s) 180, 383, 874, 1065, 1124, 1167
MbiI CCGCTC 2 cut(s) 191, 1194
MboI GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
MflI RGATCY 1 cut(s) 872
MlyI GAGTC 3 cut(s) 810, 1099, 1295
MmeI TCCRAC 2 cut(s) 904, 1275
MslI CAYNNNNRTG 1 cut(s) 432
MspI CCGG 5 cut(s) 174, 291, 440, 550, 1020
MspR9I CCNGG 4 cut(s) 291, 441, 550, 551
Mva1269I GAATGC 1 cut(s) 968
MvnI CGCG 1 cut(s) 1121
MwoI GCNNNNNNNGC 2 cut(s) 303, 1036
NciI CCSGG 4 cut(s) 291, 441, 550, 551
NcoI CCATGG 1 cut(s) 1031
NdeII GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
NlaIV GGNNCC 5 cut(s) 206, 554, 648, 690, 1029
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 408
NspI RCATGY 2 cut(s) 1109, 1359
OliI CACNNNNGTG 1 cut(s) 432
PaeI GCATGC 1 cut(s) 1359
PctI GAATGC 1 cut(s) 968
PflMI CCANNNNNTGG 3 cut(s) 168, 270, 625
PkrI GCNGC 1 cut(s) 1339
Ple19I CGATCG 1 cut(s) 1125
PleI GAGTC 3 cut(s) 809, 1098, 1294
PpsI GAGTC 3 cut(s) 809, 1098, 1294
Ppu21I YACGTR 1 cut(s) 632
PsiI TTATAA 1 cut(s) 1116
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 5 cut(s) 206, 554, 648, 690, 1029
PspPI GGNCC 5 cut(s) 171, 547, 553, 1028, 1325
PsuI RGATCY 1 cut(s) 872
PvuI CGATCG 1 cut(s) 1125
RsaI GTAC 8 cut(s) 187, 782, 992, 1007, 1046, 1077, 1237, 1450
RsaNI GTAC 8 cut(s) 186, 781, 991, 1006, 1045, 1076, 1236, 1449
RseI CAYNNNNRTG 1 cut(s) 432
SatI GCNGC 1 cut(s) 1338
Sau3AI GATC 6 cut(s) 178, 381, 872, 1063, 1122, 1165
Sau96I GGNCC 5 cut(s) 171, 547, 553, 1028, 1325
ScaI AGTACT 1 cut(s) 1077
SchI GAGTC 3 cut(s) 810, 1099, 1295
ScrFI CCNGG 4 cut(s) 291, 441, 550, 551
SfaNI GCATC 3 cut(s) 756, 1220, 1236
SfcI CTRYAG 1 cut(s) 1239
SinI GGWCC 1 cut(s) 171
SmaI CCCGGG 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 432
SphI GCATGC 1 cut(s) 1359
SsiI CCGC 3 cut(s) 189, 208, 1194
SspMI CTAG 5 cut(s) 593, 639, 876, 900, 1073
StyD4I CCNGG 4 cut(s) 289, 439, 548, 549
StyI CCWWGG 1 cut(s) 1031
TaaI ACNGT 3 cut(s) 286, 414, 821
TaiI ACGT 4 cut(s) 496, 510, 634, 1284
TaqI TCGA 4 cut(s) 504, 1066, 1125, 1164
TatI WGTACW 2 cut(s) 1005, 1075
TscAI CASTG 2 cut(s) 289, 576
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 1 cut(s) 1337
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 8 cut(s) 36, 189, 406, 843, 978, 1269, 1335, 1452
TspGWI ACGGA 2 cut(s) 659, 1193
TspMI CCCGGG 1 cut(s) 549
TspRI CASTG 2 cut(s) 289, 576
Van91I CCANNNNNTGG 3 cut(s) 168, 270, 625
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 4 cut(s) 500, 895, 1068, 1372
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 2 cut(s) 1109, 1359
XmaI CCCGGG 1 cut(s) 549
XspI CTAG 5 cut(s) 593, 639, 876, 900, 1073
ZrmI AGTACT 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.