RLG00000002721

Glycosyltransferase Family 4

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
38594785 .. 38597158
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002721

Sequence Viewer

Length: 1485 bp
ATGGCCTCCCTCATCAAACCAAAGAAACCCGTTTCCTCTTCCCAATCAAATCTTTGCACCACCCTCTTCTTCATCGTCCTCTTCACCATCCCCGTCCTCTTTCTCCTCCACACCTCCACCACCTCTTCTATCTGCCCTTCTCTCTCCAACCACCTCAACAACCCGCCCTTCTCCGGCGACCTCCGTGCCGCCGAGTTCTCCTGGAACCGCCTCCCCTTCCTCCAACACCGCCCCAATCCGCCAACCTCCCTCAAAATCGCCGTCTTCTCCCGGAAATGGCCCATCGCCACCACCCCCGGCGGCATGGAGCGCCACGCTCATACTCTCCACACTGCTCTCTCTCTCCTCGGCCACCAAGTCCACGTCTTCACCTCCCCAGTCAAACCACAAGAGCTTATGAGTCAACAACAACTCAACCTCAGCCCTACCTCCTCCCCGCCCTACCTCCACTTCCACGAGGGCGACCCCGGCTACTGGAGATACAACAAGGCCTACGAGCAGTTCCTCGAAGAAGACCAGAAACAGAAGTTCGACGTGGTACACTCCGAAAGCGTGGCGCTTCCTCATTGGCTAGCTCGCCGCCTCCCCAACCTCGCCGTCTCCTGGCACGGCATAGCCCTCGAGAGTTTGCACTCCAACATCTTCCAGGACCTGACACGTAAGCAAGGCGAGCCTATAGACCCTGCCTTCAACAAAAGCTTACAAGGAGTAGTCCCAAAAGTCCTCAACGAGATCAGGTTCTTCCATAACTACGCCCATCACGTAGCTATTAGCGACAGTTGTGGAGAAATGCTTAGGGACGTGTACCAAATTCCGAACCAGAGAGTCCATGTCATACTCAACGGTGTCAACGAAGAAGATTTCGGTGTGGATTCGAAGCTCGGGGAAGAATTTAGAGGTGGAATAGGAATACCCCAAAATGCTAGCTTGGTGTTTGGAGTGGCGGGTAGGTTAGTCAAGGACAAAGGACATCCTATTCTGTATGAAGCTTTCTCTGAACTCATAGCCAAACATCCAAACGTGTATCTGATTGTGGCCGGTTCTGGACCATGGGAGCAGCGTTACAAGGATTTAGGTCCTCGTGTACTTGTTCTCGGCTCTATGAGTCCTTCTAAACTACATGCCTTCTACAATGCCATAGATGCTTTTGTGAACCCGACCCTTAGGCCGCAAGGTCTTGACCTGACCCTCATGGAGGCGATGATGAGTGGGAAGCCGGTGATGGCCTCAAGGTTTCCGAGTATTAAAGGAAGCATTGTCGTAGACGATGAGTTCGGGTTTATGTTTGCTCCGAACGTCGCGTCGTTGCTGGAGGCTTTGGAGTTGGCTGTGAAAGAAGGGTCGAACAGGATGAGTCAACGAGGGAAGGCGTGTAGGGAGTACGCGAGTTCCATGTTTACTGCGAGGAAGATGGCATTGGCATACGAGAGGTTGTTTCTTTGTATAAAGAATGATACATTTTGTAACTATCCTTCAGCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

495

Amino Acids

55.24

Weight (kDa)

8.59

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 99 - 286 3e-20 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 100 - 282 1.4e-10 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 310 - 455 2.1e-21 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 311 - 441 2.3e-20 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014302)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19460
fragaria_vesca FvH4_5g24400
malus_domestica MD06G1022000.v1.1 MD16G1288000.v1.1
prunus_persica Prupe.5G016500_v2.0.a1 Prupe.5G099100_v2.0.a1
pyrus_communis pycom06g01590
rosa_chinensis RchiOBHm_Chr7g0214801
rosa_laevigata RLG00000002721
rosa_multiflora Rmu_sc0002308.1_g000036
rosa_roxburghii Rroxscaffold_3G00245060
rosa_rugosa Rorug07G0147100
rosa_samantha Rh7AG284100 Rh7BG275000 Rh7CG303500 Rh7DG287400
rosa_wichuraiana Rw7G024220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1263
AccII CGCG 2 cut(s) 1301, 1385
AcoI YGGCCR 2 cut(s) 349, 1035
AcsI RAATTY 2 cut(s) 810, 890
AcuI CTGAAG 1 cut(s) 1458
AfaI GTAC 4 cut(s) 540, 806, 1086, 1382
AfiI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
AflIII ACRYGT 3 cut(s) 656, 801, 1020
AgsI TTSAA 1 cut(s) 691
AjiI CACGTC 3 cut(s) 364, 535, 802
AjnI CCWGG 3 cut(s) 200, 602, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 1400, 1432
AluBI AGCT 8 cut(s) 394, 575, 699, 767, 880, 927, 989, 1478
AluI AGCT 8 cut(s) 394, 575, 699, 767, 880, 927, 989, 1478
Alw26I GTCTC 1 cut(s) 604
AlwNI CAGNNNCTG 1 cut(s) 652
Ama87I CYCGRG 2 cut(s) 620, 881
AoxI GGCC 7 cut(s) 3, 278, 349, 489, 1035, 1166, 1224
ApeKI GCWGC 1 cut(s) 1057
ApoI RAATTY 2 cut(s) 810, 890
ArsI GACNNNNNNTTYG 6 cut(s) 246, 278, 1256, 1286, 1288, 1318
AspLEI GCGC 2 cut(s) 312, 559
AspS9I GGNCC 4 cut(s) 279, 649, 1046, 1076
AsuC2I CCSGG 3 cut(s) 271, 297, 468
AsuHPI GGTGA 3 cut(s) 76, 361, 1231
AsuII TTCGAA 1 cut(s) 875
AsuNHI GCTAGC 2 cut(s) 571, 923
AvaI CYCGRG 2 cut(s) 620, 881
AvaII GGWCC 3 cut(s) 649, 1046, 1076
AxyI CCTNAGG 1 cut(s) 1163
BarI GAAGNNNNNNTAC 1 cut(s) 1456
BauI CACGAG 2 cut(s) 455, 1080
BbsI GAAGAC 3 cut(s) 256, 358, 519
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 1 cut(s) 1069
BccI CCATC 5 cut(s) 95, 290, 765, 1216, 1405
BceAI ACGGC 3 cut(s) 245, 581, 625
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 601, 635
BciT130I CCWGG 3 cut(s) 202, 604, 647
BcnI CCSGG 3 cut(s) 271, 297, 468
BcoDI GTCTC 1 cut(s) 604
BfaI CTAG 2 cut(s) 572, 924
BfmI CTRYAG 2 cut(s) 675, 1481
BfoI RGCGCY 2 cut(s) 313, 560
BisI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
BlsI GCNGC 5 cut(s) 190, 302, 581, 1059, 1170
Bme1390I CCNGG 6 cut(s) 202, 271, 297, 468, 604, 647
Bme18I GGWCC 3 cut(s) 649, 1046, 1076
BmeT110I CYCGRG 2 cut(s) 620, 881
BmgBI CACGTC 3 cut(s) 364, 535, 802
BmgT120I GGNCC 4 cut(s) 279, 649, 1046, 1076
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 6 cut(s) 202, 271, 297, 468, 604, 647
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 1132
BmtI GCTAGC 2 cut(s) 575, 927
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 3 cut(s) 256, 358, 519
BpmI CTGGAG 2 cut(s) 496, 1331
Bpu10I CCTNAGC 2 cut(s) 419, 794
Bpu14I TTCGAA 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 1213
BpuMI CCSGG 3 cut(s) 271, 297, 468
BsaAI YACGTR 2 cut(s) 659, 763
BsaJI CCNNGG 4 cut(s) 295, 346, 466, 1049
Bsc4I CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
Bse118I RCCGGY 2 cut(s) 1037, 1216
Bse1I ACTGG 2 cut(s) 377, 479
Bse21I CCTNAGG 1 cut(s) 1163
BseBI CCWGG 3 cut(s) 202, 604, 647
BseDI CCNNGG 4 cut(s) 295, 346, 466, 1049
BseGI GGATG 4 cut(s) 87, 970, 1012, 1356
BseLI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 377, 479
BseRI GAGGAG 3 cut(s) 95, 335, 421
BseXI GCAGC 1 cut(s) 1069
Bsh1236I CGCG 2 cut(s) 1301, 1385
BshFI GGCC 7 cut(s) 5, 280, 351, 491, 1037, 1168, 1226
BsiHKCI CYCGRG 2 cut(s) 620, 881
BsiSI CCGG 6 cut(s) 174, 271, 297, 468, 1038, 1217
BslFI GGGAC 2 cut(s) 698, 812
BslI CCNNNNNNNGG 5 cut(s) 173, 276, 474, 603, 1195
BsmAI GTCTC 1 cut(s) 604
BsmBI CGTCTC 1 cut(s) 604
BsmFI GGGAC 2 cut(s) 698, 812
BsnI GGCC 7 cut(s) 5, 280, 351, 491, 1037, 1168, 1226
BsoBI CYCGRG 2 cut(s) 620, 881
Bsp119I TTCGAA 1 cut(s) 875
Bsp143I GATC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 1049
BspANI GGCC 7 cut(s) 5, 280, 351, 491, 1037, 1168, 1226
BspCNI CTCAG 1 cut(s) 432
BspFNI CGCG 2 cut(s) 1301, 1385
BspLI GGNNCC 1 cut(s) 206
BspOI GCTAGC 2 cut(s) 575, 927
BspT104I TTCGAA 1 cut(s) 875
BsrFI RCCGGY 2 cut(s) 1037, 1216
BsrI ACTGG 2 cut(s) 377, 479
BssAI RCCGGY 2 cut(s) 1037, 1216
BssECI CCNNGG 4 cut(s) 295, 346, 466, 1049
BssMI GATC 1 cut(s) 732
BssSI CACGAG 2 cut(s) 455, 1080
BssT1I CCWWGG 1 cut(s) 1049
Bst2BI CACGAG 2 cut(s) 455, 1080
Bst2UI CCWGG 3 cut(s) 202, 604, 647
Bst4CI ACNGT 2 cut(s) 779, 845
Bst6I CTCTTC 4 cut(s) 43, 71, 86, 130
BstBAI YACGTR 2 cut(s) 659, 763
BstBI TTCGAA 1 cut(s) 875
BstC8I GCNNGC 4 cut(s) 573, 577, 671, 925
BstDEI CTNAG 3 cut(s) 419, 794, 1163
BstDSI CCRYGG 1 cut(s) 1049
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 4 cut(s) 87, 970, 1012, 1356
BstFNI CGCG 2 cut(s) 1301, 1385
BstH2I RGCGCY 2 cut(s) 313, 560
BstHHI GCGC 2 cut(s) 312, 559
BstKTI GATC 1 cut(s) 735
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 1 cut(s) 732
BstMWI GCNNNNNNNGC 4 cut(s) 309, 468, 670, 1142
BstNI CCWGG 3 cut(s) 202, 604, 647
BstNSI RCATGY 1 cut(s) 1124
BstSCI CCNGG 6 cut(s) 200, 269, 295, 466, 602, 645
BstSFI CTRYAG 2 cut(s) 675, 1481
BstUI CGCG 2 cut(s) 1301, 1385
BstV1I GCAGC 1 cut(s) 1069
BstV2I GAAGAC 3 cut(s) 256, 358, 519
Bsu36I CCTNAGG 1 cut(s) 1163
BsuRI GGCC 7 cut(s) 5, 280, 351, 491, 1037, 1168, 1226
BtgI CCRYGG 1 cut(s) 1049
BtgZI GCGATG 2 cut(s) 268, 1214
BtrI CACGTC 3 cut(s) 364, 535, 802
BtsCI GGATG 4 cut(s) 87, 970, 1012, 1356
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
Cac8I GCNNGC 4 cut(s) 573, 577, 671, 925
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 2 cut(s) 312, 559
Cfr10I RCCGGY 2 cut(s) 1037, 1216
Cfr13I GGNCC 4 cut(s) 279, 649, 1046, 1076
CseI GACGC 1 cut(s) 1290
Csp6I GTAC 4 cut(s) 539, 805, 1085, 1381
CviAII CATG 6 cut(s) 304, 830, 1050, 1121, 1192, 1393
CviQI GTAC 4 cut(s) 539, 805, 1085, 1381
DdeI CTNAG 3 cut(s) 419, 794, 1163
DpnI GATC 1 cut(s) 734
DpnII GATC 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 349, 1035
Eam1104I CTCTTC 4 cut(s) 43, 71, 86, 130
EarI CTCTTC 4 cut(s) 43, 71, 86, 130
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 1049
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 649, 1046, 1076
Eco57I CTGAAG 1 cut(s) 1458
Eco81I CCTNAGG 1 cut(s) 1163
Eco88I CYCGRG 2 cut(s) 620, 881
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 2 cut(s) 649, 1076
EcoRII CCWGG 3 cut(s) 200, 602, 645
EcoT14I CCWWGG 1 cut(s) 1049
ErhI CCWWGG 1 cut(s) 1049
Esp3I CGTCTC 1 cut(s) 604
FaeI CATG 6 cut(s) 307, 833, 1053, 1124, 1195, 1396
FaqI GGGAC 2 cut(s) 698, 812
FatI CATG 6 cut(s) 303, 829, 1049, 1120, 1191, 1392
FauI CCCGC 3 cut(s) 171, 444, 937
FblI GTMKAC 1 cut(s) 1263
Fnu4HI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
FokI GGATG 4 cut(s) 74, 957, 999, 1363
Fsp4HI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
FspBI CTAG 2 cut(s) 572, 924
GlaI GCGC 2 cut(s) 311, 558
GluI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
GsuI CTGGAG 2 cut(s) 496, 1331
HaeII RGCGCY 2 cut(s) 313, 560
HaeIII GGCC 7 cut(s) 5, 280, 351, 491, 1037, 1168, 1226
HapII CCGG 6 cut(s) 174, 271, 297, 468, 1038, 1217
HgaI GACGC 1 cut(s) 1290
HhaI GCGC 2 cut(s) 312, 559
Hin1II CATG 6 cut(s) 307, 833, 1053, 1124, 1195, 1396
Hin6I GCGC 2 cut(s) 310, 557
HinP1I GCGC 2 cut(s) 310, 557
HincII GTYRAC 3 cut(s) 404, 850, 1358
HindII GTYRAC 3 cut(s) 404, 850, 1358
HindIII AAGCTT 2 cut(s) 697, 987
HinfI GANTC 5 cut(s) 400, 825, 872, 1105, 1354
HpaII CCGG 6 cut(s) 174, 271, 297, 468, 1038, 1217
HphI GGTGA 3 cut(s) 76, 361, 1231
Hpy188I TCNGA 6 cut(s) 547, 816, 997, 1029, 1239, 1293
Hpy188III TCNNGA 3 cut(s) 622, 1044, 1178
Hpy99I CGWCG 3 cut(s) 536, 1301, 1306
HpyAV CCTTC 9 cut(s) 147, 178, 226, 697, 1119, 1135, 1331, 1360, 1482
HpyCH4III ACNGT 2 cut(s) 779, 845
HpyCH4IV ACGT 7 cut(s) 363, 534, 658, 762, 801, 1020, 1296
HpyCH4V TGCA 2 cut(s) 57, 631
HpyF10VI GCNNNNNNNGC 4 cut(s) 309, 468, 670, 1142
HpyF3I CTNAG 3 cut(s) 419, 794, 1163
HpySE526I ACGT 7 cut(s) 363, 534, 658, 762, 801, 1020, 1296
Hsp92II CATG 6 cut(s) 307, 833, 1053, 1124, 1195, 1396
HspAI GCGC 2 cut(s) 310, 557
Kzo9I GATC 1 cut(s) 732
LmnI GCTCC 3 cut(s) 307, 1054, 1294
Lsp1109I GCAGC 1 cut(s) 1069
LweI GCATC 1 cut(s) 1132
MaeI CTAG 2 cut(s) 572, 924
MaeII ACGT 7 cut(s) 363, 534, 658, 762, 801, 1020, 1296
MaeIII GTNAC 2 cut(s) 1061, 1463
MalI GATC 1 cut(s) 734
MboI GATC 1 cut(s) 732
MluCI AATT 2 cut(s) 810, 890
MlyI GAGTC 4 cut(s) 409, 834, 1114, 1363
MmeI TCCRAC 3 cut(s) 171, 247, 660
MseI TTAA 1 cut(s) 1245
MspI CCGG 6 cut(s) 174, 271, 297, 468, 1038, 1217
MspR9I CCNGG 6 cut(s) 202, 271, 297, 468, 604, 647
MvaI CCWGG 3 cut(s) 202, 604, 647
MvnI CGCG 2 cut(s) 1301, 1385
MwoI GCNNNNNNNGC 4 cut(s) 309, 468, 670, 1142
NciI CCSGG 3 cut(s) 271, 297, 468
NcoI CCATGG 1 cut(s) 1049
NdeII GATC 1 cut(s) 732
NheI GCTAGC 2 cut(s) 571, 923
NlaIII CATG 6 cut(s) 307, 833, 1053, 1124, 1195, 1396
NlaIV GGNNCC 1 cut(s) 206
NmeAIII GCCGAG 3 cut(s) 217, 327, 1074
NspI RCATGY 1 cut(s) 1124
NspV TTCGAA 1 cut(s) 875
PaeR7I CTCGAG 1 cut(s) 620
PceI AGGCCT 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 759, 849
PfeI GAWTC 1 cut(s) 872
PfoI TCCNGGA 3 cut(s) 200, 269, 645
PkrI GCNGC 5 cut(s) 190, 302, 581, 1059, 1170
PleI GAGTC 4 cut(s) 408, 833, 1113, 1362
PpsI GAGTC 4 cut(s) 408, 833, 1113, 1362
Ppu21I YACGTR 2 cut(s) 659, 763
PpuMI RGGWCCY 2 cut(s) 649, 1076
Psp5II RGGWCCY 2 cut(s) 649, 1076
Psp6I CCWGG 3 cut(s) 200, 602, 645
PspGI CCWGG 3 cut(s) 200, 602, 645
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 279, 649, 1046, 1076
PspPPI RGGWCCY 2 cut(s) 649, 1076
PstNI CAGNNNCTG 1 cut(s) 652
RsaI GTAC 4 cut(s) 540, 806, 1086, 1382
RsaNI GTAC 4 cut(s) 539, 805, 1085, 1381
SaqAI TTAA 1 cut(s) 1245
SatI GCNGC 5 cut(s) 189, 301, 580, 1058, 1169
Sau3AI GATC 1 cut(s) 732
Sau96I GGNCC 4 cut(s) 279, 649, 1046, 1076
SchI GAGTC 4 cut(s) 409, 834, 1114, 1363
ScrFI CCNGG 6 cut(s) 202, 271, 297, 468, 604, 647
SfaNI GCATC 1 cut(s) 1132
SfcI CTRYAG 2 cut(s) 675, 1481
Sfr274I CTCGAG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 875
SinI GGWCC 3 cut(s) 649, 1046, 1076
SlaI CTCGAG 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 620, 1228
SmoI CTYRAG 2 cut(s) 620, 1228
Sse9I AATT 2 cut(s) 810, 890
SseBI AGGCCT 1 cut(s) 491
SspMI CTAG 2 cut(s) 572, 924
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 6 cut(s) 200, 269, 295, 466, 602, 645
StyI CCWWGG 1 cut(s) 1049
TaaI ACNGT 2 cut(s) 779, 845
TaiI ACGT 7 cut(s) 366, 537, 661, 765, 804, 1023, 1299
TaqI TCGA 5 cut(s) 507, 531, 621, 875, 1343
TasI AATT 2 cut(s) 810, 890
TatI WGTACW 1 cut(s) 1084
TauI GCSGC 4 cut(s) 191, 303, 582, 1171
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 1 cut(s) 1245
Tru9I TTAA 1 cut(s) 1245
TscAI CASTG 1 cut(s) 337
TseI GCWGC 1 cut(s) 1057
TspDTI ATGAA 2 cut(s) 61, 999
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 649, 1046, 1076
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 2 cut(s) 810, 890
XceI RCATGY 1 cut(s) 1124
XhoI CTCGAG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 1263
XspI CTAG 2 cut(s) 572, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.