Rh7AG284100

Glycosyltransferase Family 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014302
Physical Location & Seq
Reverse (-)
30396093 .. 30404906
8814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG284100.1

Sequence Viewer

Length: 1272 bp
ATGGAGCGCCACGCCCACACTCTCCACACCGCTCTCTCTCTCCTCGGCCACCAAGTCCACGTCTTCACCTCCCCAGTCAAACCGCAAGAGCTTATAAGTCAACAACACCTCAACCTCAGCCCTACCTCCTCCCCGCCCTACCTTCACTTCCACGAGGGCGACCCCGGCTACTGGAGGTACAACAAGGCCTACGAGCAGTTCCTTGAAGAAGACCAGAAACAGAAGTTCGACGTGGTACACTCCGAAAGCGTGGCGCTTCCTCATTGGCTAGCTCGCCGCCTCCCCAACCTCGCCGTCTCCTGGCACGGCATAGCCCTCGAGAGCTTGCACTCCAACATCTTCCAGGACCTGACACGTAAGCAAGGCGAGCCAATAGACCCGGCCTTCAACAAAAGTTTACAAGGAGTAGTCCCAAAAGTCCTCAACGAGATCAGGTTCTTCCATAACTACGCCCATCACGTAGCTATTAGCGACAGTTGTGGAGAAATGCTTAGGGACGTGTACCAAATTCCGAACCAGAGAGTCCATGTCATACTCAACGGTGTCAACGAAGAAGATTTCGGTGTGGATTCGAAGCTCGGGGAAGAATTTAGAGGTGGAATAGGAATACCCCAAAATGCTAGCTTGGTGTTTGGAGTGGCGGGTAGGTTAGTCAAGGACAAAGGGCATCCTATTCTGTATGAAGCTTTCTCTGAACTCATAGCCAAACATCCAAACGTGTATCTGATTGTGGCCGGTTCTGGACCATGGGAGCAGCGTTACAAGGATTTAGGTCCTCGTGTACTTGTTCTCGGCTCTATGAGTCCTTCTAAACTACATGCCTTCTACAATGCCATAGATGTTTTTGTAAACCCGACCCTTAGGCCGCAAGGTCTTGACCTGACCCTCATGGAGGCGATGATGAGTGGGAAGCCGGTGATGGCCTCAAGGTTTCCGAGTATTAAAGGAAGCATTGTCGTAGACGATGAATTCGGATTTATGTTTGCTCCGAACGTCGCGTCGTTGCTGGAGGCTTTGGAGTTGGCTGTGAAAGAAGGGTCGAAGAGGATGAGTCAACGAGGGAAGGCGTGTAGGGAGTACGCGAGTTCCATGTTTACTGCGAGGAAGATGGCATTGGCATACGAGAGTGTATCTCTAGTTGGACATTCAGCAGGTGGACCTTTATCCCTAGTTGGACATTCAGCAGGAGGATGGCTTGCACGTCTCTACATGGAAGAATATGGGAAATCAGATATTTCCCTGTTATTGACTCTTGGAACCCCCCACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0016020 GO:0016740 GO:0016757
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_4 Glycos_transf_1

Protein Analysis

423

Amino Acids

47.01

Weight (kDa)

6.62

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_4 PF13439 1 - 185 6.8e-18 Glycosyltransferase Family 4
Glyco_trans_4_4 PF13579 1 - 181 9.5e-09 Glycosyl transferase 4-like domain
Glycos_transf_1 PF00534 209 - 351 4.6e-22 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 210 - 340 3.6e-21 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014302)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19460
fragaria_vesca FvH4_5g24400
malus_domestica MD06G1022000.v1.1 MD16G1288000.v1.1
prunus_persica Prupe.5G016500_v2.0.a1 Prupe.5G099100_v2.0.a1
pyrus_communis pycom06g01590
rosa_chinensis RchiOBHm_Chr7g0214801
rosa_laevigata RLG00000002721
rosa_multiflora Rmu_sc0002308.1_g000036
rosa_roxburghii Rroxscaffold_3G00245060
rosa_rugosa Rorug07G0147100
rosa_samantha Rh7AG284100 Rh7BG275000 Rh7CG303500 Rh7DG287400
rosa_wichuraiana Rw7G024220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AarI CACCTGC 1 cut(s) 1142
Acc36I ACCTGC 1 cut(s) 1142
AccBSI CCGCTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 960
AccII CGCG 2 cut(s) 998, 1082
AciI CCGC 6 cut(s) 30, 83, 134, 277, 641, 866
AcoI YGGCCR 2 cut(s) 46, 732
AcsI RAATTY 3 cut(s) 507, 587, 968
AfaI GTAC 5 cut(s) 179, 237, 503, 783, 1079
AfiI CCNNNNNNNGG 3 cut(s) 171, 300, 892
AflIII ACRYGT 3 cut(s) 353, 498, 717
AgsI TTSAA 2 cut(s) 206, 388
AjiI CACGTC 4 cut(s) 61, 232, 499, 1202
AjnI CCWGG 2 cut(s) 299, 342
AjuI GAANNNNNNNTTGG 2 cut(s) 1097, 1129
AluBI AGCT 7 cut(s) 91, 272, 324, 464, 577, 624, 686
AluI AGCT 7 cut(s) 91, 272, 324, 464, 577, 624, 686
Alw26I GTCTC 2 cut(s) 301, 1208
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 2 cut(s) 317, 578
AoxI GGCC 6 cut(s) 46, 186, 381, 732, 863, 921
ApeKI GCWGC 1 cut(s) 754
ApoI RAATTY 3 cut(s) 507, 587, 968
ArsI GACNNNNNNTTYG 4 cut(s) 953, 983, 985, 1015
AspLEI GCGC 2 cut(s) 9, 256
AspS9I GGNCC 4 cut(s) 346, 743, 773, 1157
AsuC2I CCSGG 2 cut(s) 165, 380
AsuHPI GGTGA 2 cut(s) 58, 928
AsuII TTCGAA 1 cut(s) 572
AsuNHI GCTAGC 2 cut(s) 268, 620
AvaI CYCGRG 2 cut(s) 317, 578
AvaII GGWCC 4 cut(s) 346, 743, 773, 1157
AxyI CCTNAGG 1 cut(s) 860
BauI CACGAG 2 cut(s) 152, 777
BbsI GAAGAC 2 cut(s) 55, 216
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 766
BccI CCATC 4 cut(s) 462, 913, 1102, 1185
BceAI ACGGC 2 cut(s) 278, 322
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 2 cut(s) 301, 344
BcnI CCSGG 2 cut(s) 165, 380
BcoDI GTCTC 2 cut(s) 301, 1208
BfaI CTAG 4 cut(s) 269, 621, 1136, 1169
BfoI RGCGCY 2 cut(s) 10, 257
BfuAI ACCTGC 1 cut(s) 1142
BisI GCNGC 3 cut(s) 277, 755, 866
BlsI GCNGC 3 cut(s) 278, 756, 867
Bme1390I CCNGG 4 cut(s) 165, 301, 344, 380
Bme18I GGWCC 4 cut(s) 346, 743, 773, 1157
BmeT110I CYCGRG 2 cut(s) 317, 578
BmgBI CACGTC 4 cut(s) 61, 232, 499, 1202
BmgT120I GGNCC 4 cut(s) 346, 743, 773, 1157
BmiI GGNNCC 1 cut(s) 1258
BmrFI CCNGG 4 cut(s) 165, 301, 344, 380
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 676
BmtI GCTAGC 2 cut(s) 272, 624
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 2 cut(s) 55, 216
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 2 cut(s) 193, 1028
Bpu10I CCTNAGC 2 cut(s) 116, 491
Bpu14I TTCGAA 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 2 cut(s) 165, 380
BsaAI YACGTR 2 cut(s) 356, 460
BsaJI CCNNGG 3 cut(s) 43, 163, 746
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 300, 892
Bse118I RCCGGY 2 cut(s) 734, 913
Bse1I ACTGG 3 cut(s) 74, 176, 1267
Bse21I CCTNAGG 1 cut(s) 860
BseBI CCWGG 2 cut(s) 301, 344
BseDI CCNNGG 3 cut(s) 43, 163, 746
BseGI GGATG 4 cut(s) 667, 709, 1053, 1196
BseLI CCNNNNNNNGG 3 cut(s) 171, 300, 892
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 74, 176, 1267
BseRI GAGGAG 2 cut(s) 32, 118
BseXI GCAGC 1 cut(s) 766
Bsh1236I CGCG 2 cut(s) 998, 1082
BshFI GGCC 6 cut(s) 48, 188, 383, 734, 865, 923
BsiHKCI CYCGRG 2 cut(s) 317, 578
BsiSI CCGG 4 cut(s) 165, 380, 735, 914
BslFI GGGAC 2 cut(s) 395, 509
BslI CCNNNNNNNGG 3 cut(s) 171, 300, 892
BsmAI GTCTC 2 cut(s) 301, 1208
BsmBI CGTCTC 2 cut(s) 301, 1208
BsmFI GGGAC 2 cut(s) 395, 509
BsnI GGCC 6 cut(s) 48, 188, 383, 734, 865, 923
BsoBI CYCGRG 2 cut(s) 317, 578
Bsp119I TTCGAA 1 cut(s) 572
Bsp143I GATC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 746
BspACI CCGC 6 cut(s) 30, 83, 134, 277, 641, 866
BspANI GGCC 6 cut(s) 48, 188, 383, 734, 865, 923
BspCNI CTCAG 1 cut(s) 129
BspFNI CGCG 2 cut(s) 998, 1082
BspLI GGNNCC 1 cut(s) 1258
BspMI ACCTGC 1 cut(s) 1142
BspOI GCTAGC 2 cut(s) 272, 624
BspT104I TTCGAA 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 734, 913
BsrI ACTGG 3 cut(s) 74, 176, 1267
BssAI RCCGGY 2 cut(s) 734, 913
BssECI CCNNGG 3 cut(s) 43, 163, 746
BssMI GATC 1 cut(s) 429
BssSI CACGAG 2 cut(s) 152, 777
BssT1I CCWWGG 1 cut(s) 746
Bst2BI CACGAG 2 cut(s) 152, 777
Bst2UI CCWGG 2 cut(s) 301, 344
Bst4CI ACNGT 2 cut(s) 476, 542
Bst6I CTCTTC 1 cut(s) 1037
BstBAI YACGTR 2 cut(s) 356, 460
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 6 cut(s) 270, 274, 326, 368, 622, 1197
BstDEI CTNAG 3 cut(s) 116, 491, 860
BstDSI CCRYGG 1 cut(s) 746
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 4 cut(s) 667, 709, 1053, 1196
BstFNI CGCG 2 cut(s) 998, 1082
BstH2I RGCGCY 2 cut(s) 10, 257
BstHHI GCGC 2 cut(s) 9, 256
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 2 cut(s) 301, 1208
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 2 cut(s) 165, 367
BstNI CCWGG 2 cut(s) 301, 344
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 4 cut(s) 163, 299, 342, 378
BstUI CGCG 2 cut(s) 998, 1082
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 2 cut(s) 55, 216
Bsu36I CCTNAGG 1 cut(s) 860
BsuRI GGCC 6 cut(s) 48, 188, 383, 734, 865, 923
BtgI CCRYGG 1 cut(s) 746
BtgZI GCGATG 1 cut(s) 911
BtrI CACGTC 4 cut(s) 61, 232, 499, 1202
BtsCI GGATG 4 cut(s) 667, 709, 1053, 1196
BveI ACCTGC 1 cut(s) 1142
Cac8I GCNNGC 6 cut(s) 270, 274, 326, 368, 622, 1197
CaiI CAGNNNCTG 1 cut(s) 349
CfoI GCGC 2 cut(s) 9, 256
Cfr10I RCCGGY 2 cut(s) 734, 913
Cfr13I GGNCC 4 cut(s) 346, 743, 773, 1157
CseI GACGC 1 cut(s) 987
Csp6I GTAC 5 cut(s) 178, 236, 502, 782, 1078
CviAII CATG 6 cut(s) 527, 747, 818, 889, 1090, 1210
CviQI GTAC 5 cut(s) 178, 236, 502, 782, 1078
DdeI CTNAG 3 cut(s) 116, 491, 860
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
EaeI YGGCCR 2 cut(s) 46, 732
Eam1104I CTCTTC 1 cut(s) 1037
EarI CTCTTC 1 cut(s) 1037
Eco130I CCWWGG 1 cut(s) 746
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 4 cut(s) 346, 743, 773, 1157
Eco81I CCTNAGG 1 cut(s) 860
Eco88I CYCGRG 2 cut(s) 317, 578
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoO109I RGGNCCY 2 cut(s) 346, 773
EcoRI GAATTC 1 cut(s) 968
EcoRII CCWGG 2 cut(s) 299, 342
EcoT14I CCWWGG 1 cut(s) 746
ErhI CCWWGG 1 cut(s) 746
Esp3I CGTCTC 2 cut(s) 301, 1208
FaeI CATG 6 cut(s) 530, 750, 821, 892, 1093, 1213
FaqI GGGAC 2 cut(s) 395, 509
FatI CATG 6 cut(s) 526, 746, 817, 888, 1089, 1209
FauI CCCGC 2 cut(s) 141, 634
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 3 cut(s) 277, 755, 866
FokI GGATG 4 cut(s) 654, 696, 1060, 1203
Fsp4HI GCNGC 3 cut(s) 277, 755, 866
FspBI CTAG 4 cut(s) 269, 621, 1136, 1169
GlaI GCGC 2 cut(s) 8, 255
GluI GCNGC 3 cut(s) 277, 755, 866
GsuI CTGGAG 2 cut(s) 193, 1028
HaeII RGCGCY 2 cut(s) 10, 257
HaeIII GGCC 6 cut(s) 48, 188, 383, 734, 865, 923
HapII CCGG 4 cut(s) 165, 380, 735, 914
HgaI GACGC 1 cut(s) 987
HhaI GCGC 2 cut(s) 9, 256
Hin1II CATG 6 cut(s) 530, 750, 821, 892, 1093, 1213
Hin6I GCGC 2 cut(s) 7, 254
HinP1I GCGC 2 cut(s) 7, 254
HincII GTYRAC 3 cut(s) 101, 547, 1055
HindII GTYRAC 3 cut(s) 101, 547, 1055
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 5 cut(s) 522, 569, 802, 1051, 1249
HpaII CCGG 4 cut(s) 165, 380, 735, 914
HphI GGTGA 2 cut(s) 58, 928
Hpy188I TCNGA 8 cut(s) 244, 513, 694, 726, 936, 974, 990, 1231
Hpy188III TCNNGA 3 cut(s) 319, 741, 875
Hpy99I CGWCG 3 cut(s) 233, 998, 1003
HpyAV CCTTC 6 cut(s) 152, 394, 816, 832, 1028, 1057
HpyCH4III ACNGT 2 cut(s) 476, 542
HpyCH4IV ACGT 8 cut(s) 60, 231, 355, 459, 498, 717, 993, 1201
HpyCH4V TGCA 2 cut(s) 328, 1199
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 367
HpyF3I CTNAG 3 cut(s) 116, 491, 860
HpySE526I ACGT 8 cut(s) 60, 231, 355, 459, 498, 717, 993, 1201
Hsp92II CATG 6 cut(s) 530, 750, 821, 892, 1093, 1213
HspAI GCGC 2 cut(s) 7, 254
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 3 cut(s) 4, 751, 991
Lsp1109I GCAGC 1 cut(s) 766
LweI GCATC 1 cut(s) 676
MaeI CTAG 4 cut(s) 269, 621, 1136, 1169
MaeII ACGT 8 cut(s) 60, 231, 355, 459, 498, 717, 993, 1201
MaeIII GTNAC 1 cut(s) 758
MalI GATC 1 cut(s) 431
MbiI CCGCTC 1 cut(s) 32
MboI GATC 1 cut(s) 429
MluCI AATT 3 cut(s) 507, 587, 968
MlyI GAGTC 4 cut(s) 531, 811, 1060, 1243
MmeI TCCRAC 3 cut(s) 357, 1120, 1153
MseI TTAA 1 cut(s) 942
MspI CCGG 4 cut(s) 165, 380, 735, 914
MspR9I CCNGG 4 cut(s) 165, 301, 344, 380
MvaI CCWGG 2 cut(s) 301, 344
MvnI CGCG 2 cut(s) 998, 1082
MwoI GCNNNNNNNGC 2 cut(s) 165, 367
NciI CCSGG 2 cut(s) 165, 380
NcoI CCATGG 1 cut(s) 746
NdeII GATC 1 cut(s) 429
NheI GCTAGC 2 cut(s) 268, 620
NlaIII CATG 6 cut(s) 530, 750, 821, 892, 1093, 1213
NlaIV GGNNCC 1 cut(s) 1258
NmeAIII GCCGAG 2 cut(s) 24, 771
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 572
PaeR7I CTCGAG 1 cut(s) 317
PaqCI CACCTGC 1 cut(s) 1142
PceI AGGCCT 1 cut(s) 188
PcsI WCGNNNNNNNCGW 2 cut(s) 456, 546
PfeI GAWTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 3 cut(s) 278, 756, 867
PleI GAGTC 4 cut(s) 530, 810, 1059, 1243
PpsI GAGTC 4 cut(s) 530, 810, 1059, 1243
Ppu21I YACGTR 2 cut(s) 356, 460
PpuMI RGGWCCY 2 cut(s) 346, 773
PsiI TTATAA 1 cut(s) 95
Psp5II RGGWCCY 2 cut(s) 346, 773
Psp6I CCWGG 2 cut(s) 299, 342
PspGI CCWGG 2 cut(s) 299, 342
PspN4I GGNNCC 1 cut(s) 1258
PspPI GGNCC 4 cut(s) 346, 743, 773, 1157
PspPPI RGGWCCY 2 cut(s) 346, 773
PstNI CAGNNNCTG 1 cut(s) 349
RsaI GTAC 5 cut(s) 179, 237, 503, 783, 1079
RsaNI GTAC 5 cut(s) 178, 236, 502, 782, 1078
SaqAI TTAA 1 cut(s) 942
SatI GCNGC 3 cut(s) 277, 755, 866
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 4 cut(s) 346, 743, 773, 1157
SchI GAGTC 4 cut(s) 531, 811, 1060, 1243
ScrFI CCNGG 4 cut(s) 165, 301, 344, 380
SfaNI GCATC 1 cut(s) 676
Sfr274I CTCGAG 1 cut(s) 317
SfuI TTCGAA 1 cut(s) 572
SinI GGWCC 4 cut(s) 346, 743, 773, 1157
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 2 cut(s) 317, 925
SmoI CTYRAG 2 cut(s) 317, 925
Sse9I AATT 3 cut(s) 507, 587, 968
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 6 cut(s) 30, 83, 134, 277, 641, 866
SspMI CTAG 4 cut(s) 269, 621, 1136, 1169
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 4 cut(s) 163, 299, 342, 378
StyI CCWWGG 1 cut(s) 746
TaaI ACNGT 2 cut(s) 476, 542
TaiI ACGT 8 cut(s) 63, 234, 358, 462, 501, 720, 996, 1204
TaqI TCGA 4 cut(s) 228, 318, 572, 1040
TasI AATT 3 cut(s) 507, 587, 968
TatI WGTACW 1 cut(s) 781
TauI GCSGC 2 cut(s) 279, 868
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 1 cut(s) 942
Tru9I TTAA 1 cut(s) 942
TseI GCWGC 1 cut(s) 754
TspDTI ATGAA 2 cut(s) 696, 981
VpaK11BI GGWCC 4 cut(s) 346, 743, 773, 1157
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 3 cut(s) 507, 587, 968
XceI RCATGY 1 cut(s) 821
XhoI CTCGAG 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 960
XspI CTAG 4 cut(s) 269, 621, 1136, 1169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.